3MOPG

The ternary death domain complex of myd88, irak4, and irak2
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
107
structure length
107
Chain Sequence
MGPITPSTYVRCLNVGLIRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALLQTGKSPTSELLFDWGTTNCTVGDLVDLLIQNEFFAPASLLLPDAVPLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (2-5)TIV2 (6-9)EMPTY3H1 (11-13)TIV6 (75-78)TI2 (74-77)AH1 (16-27)AH4 (66-74)TIV3 (27-30)AH2 (31-38)AH3 (50-57)TIV5 (46-49)AH6 (94-100)TIV7 (102-105)TIV4 (41-44)3H2 (58-60)TI1 (60-63)AH5 (81-90)Updating...
connected with : NaN
molecule tags Signaling protein, immune system
source organism Homo sapiens
publication title Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling.
pubmed doi rcsb
molecule keywords Myeloid differentiation primary response protein MyD88
total genus 27
structure length 107
sequence length 107
chains with identical sequence H, I, J
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2010-04-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 3mopG00
2MB9A 4JQWA 4E9MA 3KATA 2DBHA 2N80A 2YGSA 4N1KA 3LQRA 1DGNA 4N1LA 1D2ZA 1E3YA 2YQFA 2A9IA 4IZ7B 2BBRA 4IZ5E 4RHWA 2OF5A 2DBFA 2KM6A 3LQQA 4EWIA 4ZBWA 2DBGA 2B1WA 4JUPA 4O7QA 1C15A 4F44A 4QOBA 1WH4A 3CRDA 1FADA 2HM2Q 3MOPA 4I16A 2F1SA 1CY5A 1WMGA 2P1HA 2N00A 1DDFA 3J6JA 1E41A 2MS7A 4P4HI 2A5YB 2MN4A 2LS7A 2MPCA 3J63A 4RHWE 2YVIA 1A1ZA 2NAQA 1PN5A 3QF2A 4A2QA 3CL3A 4P4HA 2LWEA 2MS8A 3MOPK 4M9XA 4O6XA 4F42A 1CWWA 3T6PA 1ICHA 4DWNA 3MOPG 2KN6A 2N7ZA 4A2WA 4LWDA 2O71A 4N1JA 4O9LA 4D8OA 2N83A 4O9FA 2N1FA 4M9SA 2DBDA 4M9ZA 4IZAB 2DO9A 4UZ0A 2N97A 4FH0A 3YGSP 2YU0A 3EZQB 1YGOA 1WXPA 2GF5A 2OF5H 2NZ7A 2LWDA 2VGQA 2IB1A 2NSNA 1NGRA 4NQKA 1D2ZB 2L6AA 1Z6TA 1N3KA 1UCPA 1A1WA 2L9MA 2D96A 3YGSC 2G7RA 2M5VA 2BBZA 3EZQA
chains in the Genus database with same CATH superfamily
2MB9A 4JQWA 4E9MA 3KATA 2DBHA 2N80A 2YGSA 4N1KA 3LQRA 2XV9A 1DGNA 4N1LA 1D2ZA 1E3YA 2YQFA 2A9IA 4IZ7B 2BBRA 4IZ5E 4RHWA 2OF5A 2MJMA 2DBFA 2KM6A 3LQQA 4EWIA 4ZBWA 2DBGA 2B1WA 4JUPA 4O7QA 1C15A 4F44A 4QOBA 1WH4A 3CRDA 1FADA 2HM2Q 3MOPA 4I16A 2F1SA 1CY5A 1WMGA 2P1HA 2N00A 1DDFA 3J6JA 1E41A 2MS7A 4P4HI 2A5YB 2MN4A 2LS7A 2MPCA 3J63A 4RHWE 2YVIA 1A1ZA 2NAQA 1PN5A 3QF2A 4A2QA 3CL3A 4P4HA 2LWEA 2MS8A 3MOPK 4M9XA 4O6XA 4F42A 1CWWA 3T6PA 1ICHA 4DWNA 3MOPG 2KN6A 2N7ZA 4A2WA 4LWDA 2O71A 4N1JA 4O9LA 4D8OA 2N83A 4O9FA 2N1FA 4M9SA 2DBDA 4M9ZA 4IZAB 2DO9A 4UZ0A 2N97A 4FH0A 3YGSP 2YU0A 3EZQB 1YGOA 1WXPA 2GF5A 2OF5H 2NZ7A 2LWDA 2VGQA 2IB1A 2NSNA 1NGRA 4NQKA 1D2ZB 2L6AA 1Z6TA 1N3KA 1UCPA 1A1WA 2L9MA 2D96A 3YGSC 2G7RA 2M5VA 2BBZA 3EZQA
chains in the Genus database with same CATH topology
2MB9A 4JQWA 4E9MA 3KATA 2DBHA 2N80A 2YGSA 4N1KA 3LQRA 2XV9A 1DGNA 4N1LA 1D2ZA 1E3YA 2YQFA 2A9IA 4IZ7B 2BBRA 4IZ5E 4RHWA 2OF5A 2MJMA 2DBFA 2KM6A 3LQQA 4EWIA 4ZBWA 2DBGA 2B1WA 4JUPA 4O7QA 1C15A 4F44A 4QOBA 1WH4A 3CRDA 1FADA 2HM2Q 3MOPA 4I16A 2F1SA 1CY5A 1WMGA 2P1HA 2N00A 1DDFA 3J6JA 1E41A 2MS7A 4P4HI 2A5YB 2MN4A 2LS7A 2MPCA 3J63A 4RHWE 2YVIA 1A1ZA 2NAQA 1PN5A 3QF2A 4A2QA 3CL3A 4P4HA 2LWEA 2MS8A 3MOPK 4M9XA 4O6XA 4F42A 1CWWA 3T6PA 1ICHA 4DWNA 3MOPG 2KN6A 2N7ZA 4A2WA 4LWDA 2O71A 4N1JA 4O9LA 4D8OA 2N83A 4O9FA 2N1FA 4M9SA 2DBDA 4M9ZA 4IZAB 2DO9A 4UZ0A 2N97A 4FH0A 3YGSP 2YU0A 3EZQB 1YGOA 1WXPA 2GF5A 2OF5H 2NZ7A 2LWDA 2VGQA 2IB1A 2NSNA 1NGRA 4NQKA 1D2ZB 2L6AA 1Z6TA 1N3KA 1UCPA 1A1WA 2L9MA 2D96A 3YGSC 2G7RA 2M5VA 2BBZA 3EZQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MB9 A;  4JQW A;  4E9M A;  3KAT A;  2DBH A;  2N80 A;  2YGS A;  4N1K A;  3LQR A;  1DGN A;  4N1L A;  1D2Z A;  1E3Y A;  2YQF A;  2A9I A;  4IZ7 B;  2BBR A;  4IZ5 E;  4RHW A;  2OF5 A;  2DBF A;  2KM6 A;  3LQQ A;  4EWI A;  4ZBW A;  2DBG A;  2B1W A;  4JUP A;  4O7Q A;  1C15 A;  4F44 A;  4QOB A;  1WH4 A;  3CRD A;  1FAD A;  2HM2 Q;  3MOP A;  4I16 A;  2F1S A;  1CY5 A;  1WMG A;  2P1H A;  2N00 A;  1DDF A;  3J6J A;  1E41 A;  2MS7 A;  4P4H I;  2A5Y B;  2MN4 A;  2LS7 A;  2MPC A;  3J63 A;  4RHW E;  2YVI A;  1A1Z A;  2NAQ A;  1PN5 A;  3QF2 A;  4A2Q A;  3CL3 A;  4P4H A;  2LWE A;  2MS8 A;  3MOP K;  4M9X A;  4O6X A;  4F42 A;  1CWW A;  3T6P A;  1ICH A;  4DWN A;  3MOP G;  2KN6 A;  2N7Z A;  4A2W A;  4LWD A;  2O71 A;  4N1J A;  4O9L A;  4D8O A;  2N83 A;  4O9F A;  2N1F A;  4M9S A;  2DBD A;  4M9Z A;  4IZA B;  2DO9 A;  4UZ0 A;  2N97 A;  4FH0 A;  3YGS P;  2YU0 A;  3EZQ B;  1YGO A;  1WXP A;  2GF5 A;  2OF5 H;  2NZ7 A;  2LWD A;  2VGQ A;  2IB1 A;  2NSN A;  1NGR A;  4NQK A;  1D2Z B;  2L6A A;  1Z6T A;  1N3K A;  1UCP A;  1A1W A;  2L9M A;  2D96 A;  3YGS C;  2G7R A;  2M5V A;  2BBZ A;  3EZQ A; 
#chains in the Genus database with same CATH topology
 2MB9 A;  4JQW A;  4E9M A;  3KAT A;  2DBH A;  2N80 A;  2YGS A;  4N1K A;  3LQR A;  2XV9 A;  1DGN A;  4N1L A;  1D2Z A;  1E3Y A;  2YQF A;  2A9I A;  4IZ7 B;  2BBR A;  4IZ5 E;  4RHW A;  2OF5 A;  2MJM A;  2DBF A;  2KM6 A;  3LQQ A;  4EWI A;  4ZBW A;  2DBG A;  2B1W A;  4JUP A;  4O7Q A;  1C15 A;  4F44 A;  4QOB A;  1WH4 A;  3CRD A;  1FAD A;  2HM2 Q;  3MOP A;  4I16 A;  2F1S A;  1CY5 A;  1WMG A;  2P1H A;  2N00 A;  1DDF A;  3J6J A;  1E41 A;  2MS7 A;  4P4H I;  2A5Y B;  2MN4 A;  2LS7 A;  2MPC A;  3J63 A;  4RHW E;  2YVI A;  1A1Z A;  2NAQ A;  1PN5 A;  3QF2 A;  4A2Q A;  3CL3 A;  4P4H A;  2LWE A;  2MS8 A;  3MOP K;  4M9X A;  4O6X A;  4F42 A;  1CWW A;  3T6P A;  1ICH A;  4DWN A;  3MOP G;  2KN6 A;  2N7Z A;  4A2W A;  4LWD A;  2O71 A;  4N1J A;  4O9L A;  4D8O A;  2N83 A;  4O9F A;  2N1F A;  4M9S A;  2DBD A;  4M9Z A;  4IZA B;  2DO9 A;  4UZ0 A;  2N97 A;  4FH0 A;  3YGS P;  2YU0 A;  3EZQ B;  1YGO A;  1WXP A;  2GF5 A;  2OF5 H;  2NZ7 A;  2LWD A;  2VGQ A;  2IB1 A;  2NSN A;  1NGR A;  4NQK A;  1D2Z B;  2L6A A;  1Z6T A;  1N3K A;  1UCP A;  1A1W A;  2L9M A;  2D96 A;  3YGS C;  2G7R A;  2M5V A;  2BBZ A;  3EZQ A; 
#chains in the Genus database with same CATH homology
 2MB9 A;  4JQW A;  4E9M A;  3KAT A;  2DBH A;  2N80 A;  2YGS A;  4N1K A;  3LQR A;  2XV9 A;  1DGN A;  4N1L A;  1D2Z A;  1E3Y A;  2YQF A;  2A9I A;  4IZ7 B;  2BBR A;  4IZ5 E;  4RHW A;  2OF5 A;  2MJM A;  2DBF A;  2KM6 A;  3LQQ A;  4EWI A;  4ZBW A;  2DBG A;  2B1W A;  4JUP A;  4O7Q A;  1C15 A;  4F44 A;  4QOB A;  1WH4 A;  3CRD A;  1FAD A;  2HM2 Q;  3MOP A;  4I16 A;  2F1S A;  1CY5 A;  1WMG A;  2P1H A;  2N00 A;  1DDF A;  3J6J A;  1E41 A;  2MS7 A;  4P4H I;  2A5Y B;  2MN4 A;  2LS7 A;  2MPC A;  3J63 A;  4RHW E;  2YVI A;  1A1Z A;  2NAQ A;  1PN5 A;  3QF2 A;  4A2Q A;  3CL3 A;  4P4H A;  2LWE A;  2MS8 A;  3MOP K;  4M9X A;  4O6X A;  4F42 A;  1CWW A;  3T6P A;  1ICH A;  4DWN A;  3MOP G;  2KN6 A;  2N7Z A;  4A2W A;  4LWD A;  2O71 A;  4N1J A;  4O9L A;  4D8O A;  2N83 A;  4O9F A;  2N1F A;  4M9S A;  2DBD A;  4M9Z A;  4IZA B;  2DO9 A;  4UZ0 A;  2N97 A;  4FH0 A;  3YGS P;  2YU0 A;  3EZQ B;  1YGO A;  1WXP A;  2GF5 A;  2OF5 H;  2NZ7 A;  2LWD A;  2VGQ A;  2IB1 A;  2NSN A;  1NGR A;  4NQK A;  1D2Z B;  2L6A A;  1Z6T A;  1N3K A;  1UCP A;  1A1W A;  2L9M A;  2D96 A;  3YGS C;  2G7R A;  2M5V A;  2BBZ A;  3EZQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.