4E9MA

Nod1 card domain with three disulfide-clinched, domain-swapped dimers in the asymmetric unit
Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
97
structure length
97
Chain Sequence
SESHPHIQLLKSNRELLVTHIRNTQCLVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQLADAYVDLRPWLLEIGFS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (18-33)TIV1 (48-51)AH2 (37-47)AH4 (64-78)AH3 (52-60)AH5 (80-98)EMPTYUpdating...
connected with : NaN
publication title Crystal structure of nod1 card domain with three disulfide-clinched, domain-swapped dimers in the asymmetric unit
rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords Nucleotide-binding oligomerization domain-containing protein
total genus 37
structure length 97
sequence length 97
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2012-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4e9mA00
3MOPG 1E41A 1NGRA 4N1JA 2N80A 3EZQB 1C15A 2HM2Q 2DBGA 4IZAB 1Z6TA 2L6AA 1E3YA 4M9ZA 3YGSC 1WMGA 2MB9A 2DBFA 2DBHA 2O71A 4RHWA 2OF5H 4P4HA 2B1WA 2YQFA 2GF5A 1D2ZB 3J63A 4M9SA 3YGSP 4N1KA 4O9FA 4IZ7B 1A1WA 1PN5A 3MOPK 1A1ZA 2L9MA 4NQKA 2DO9A 4N1LA 2A5YB 4DWNA 4O9LA 2YVIA 4A2WA 4F42A 3LQQA 4RHWE 2YU0A 2YGSA 2LS7A 2N1FA 2N7ZA 3MOPA 4O6XA 1FADA 4D8OA 4LWDA 2NSNA 4P4HI 2N00A 2NAQA 2NZ7A 3QF2A 2N97A 3KATA 2DBDA 4IZ5E 2LWEA 4EWIA 2KN6A 4E9MA 2G7RA 3J6JA 1DGNA 4JQWA 4UZ0A 2D96A 2KM6A 3EZQA 1DDFA 3T6PA 4JUPA 2BBZA 1WH4A 2MN4A 3CRDA 4F44A 4FH0A 2LWDA 2VGQA 4QOBA 2A9IA 1D2ZA 1CY5A 2MS7A 1CWWA 4I16A 2MPCA 3LQRA 2BBRA 4M9XA 4A2QA 2M5VA 1N3KA 2MS8A 1UCPA 1WXPA 2F1SA 1YGOA 3CL3A 4ZBWA 2N83A 2P1HA 4O7QA 2OF5A 1ICHA 2IB1A
chains in the Genus database with same CATH superfamily
2MJMA 3MOPG 1E41A 1NGRA 4N1JA 2N80A 3EZQB 1C15A 2HM2Q 2DBGA 4IZAB 1Z6TA 2L6AA 1E3YA 4M9ZA 3YGSC 1WMGA 2MB9A 2DBFA 2XV9A 2DBHA 2O71A 4RHWA 2OF5H 4P4HA 2B1WA 2YQFA 2GF5A 1D2ZB 3J63A 4M9SA 3YGSP 4N1KA 4O9FA 4IZ7B 1A1WA 1PN5A 3MOPK 1A1ZA 2L9MA 4NQKA 2DO9A 4N1LA 2A5YB 4DWNA 4O9LA 2YVIA 4A2WA 4F42A 3LQQA 4RHWE 2YU0A 2YGSA 2LS7A 2N1FA 2N7ZA 3MOPA 4O6XA 1FADA 4D8OA 4LWDA 2NSNA 4P4HI 2N00A 2NAQA 2NZ7A 3QF2A 2N97A 3KATA 2DBDA 4IZ5E 2LWEA 4EWIA 2KN6A 4E9MA 2G7RA 3J6JA 1DGNA 4JQWA 4UZ0A 2D96A 2KM6A 3EZQA 1DDFA 3T6PA 4JUPA 2BBZA 1WH4A 2MN4A 3CRDA 4F44A 4FH0A 2LWDA 2VGQA 4QOBA 2A9IA 1D2ZA 1CY5A 2MS7A 1CWWA 4I16A 2MPCA 3LQRA 2BBRA 4M9XA 4A2QA 2M5VA 1N3KA 2MS8A 1UCPA 1WXPA 2F1SA 1YGOA 3CL3A 4ZBWA 2N83A 2P1HA 4O7QA 2OF5A 1ICHA 2IB1A
chains in the Genus database with same CATH topology
2MJMA 3MOPG 1E41A 1NGRA 4N1JA 2N80A 3EZQB 1C15A 2HM2Q 2DBGA 4IZAB 1Z6TA 2L6AA 1E3YA 4M9ZA 3YGSC 1WMGA 2MB9A 2DBFA 2XV9A 2DBHA 2O71A 4RHWA 2OF5H 4P4HA 2B1WA 2YQFA 2GF5A 1D2ZB 3J63A 4M9SA 3YGSP 4N1KA 4O9FA 4IZ7B 1A1WA 1PN5A 3MOPK 1A1ZA 2L9MA 4NQKA 2DO9A 4N1LA 2A5YB 4DWNA 4O9LA 2YVIA 4A2WA 4F42A 3LQQA 4RHWE 2YU0A 2YGSA 2LS7A 2N1FA 2N7ZA 3MOPA 4O6XA 1FADA 4D8OA 4LWDA 2NSNA 4P4HI 2N00A 2NAQA 2NZ7A 3QF2A 2N97A 3KATA 2DBDA 4IZ5E 2LWEA 4EWIA 2KN6A 4E9MA 2G7RA 3J6JA 1DGNA 4JQWA 4UZ0A 2D96A 2KM6A 3EZQA 1DDFA 3T6PA 4JUPA 2BBZA 1WH4A 2MN4A 3CRDA 4F44A 4FH0A 2LWDA 2VGQA 4QOBA 2A9IA 1D2ZA 1CY5A 2MS7A 1CWWA 4I16A 2MPCA 3LQRA 2BBRA 4M9XA 4A2QA 2M5VA 1N3KA 2MS8A 1UCPA 1WXPA 2F1SA 1YGOA 3CL3A 4ZBWA 2N83A 2P1HA 4O7QA 2OF5A 1ICHA 2IB1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MOP G;  1E41 A;  1NGR A;  4N1J A;  2N80 A;  3EZQ B;  1C15 A;  2HM2 Q;  2DBG A;  4IZA B;  1Z6T A;  2L6A A;  1E3Y A;  4M9Z A;  3YGS C;  1WMG A;  2MB9 A;  2DBF A;  2DBH A;  2O71 A;  4RHW A;  2OF5 H;  4P4H A;  2B1W A;  2YQF A;  2GF5 A;  1D2Z B;  3J63 A;  4M9S A;  3YGS P;  4N1K A;  4O9F A;  4IZ7 B;  1A1W A;  1PN5 A;  3MOP K;  1A1Z A;  2L9M A;  4NQK A;  2DO9 A;  4N1L A;  2A5Y B;  4DWN A;  4O9L A;  2YVI A;  4A2W A;  4F42 A;  3LQQ A;  4RHW E;  2YU0 A;  2YGS A;  2LS7 A;  2N1F A;  2N7Z A;  3MOP A;  4O6X A;  1FAD A;  4D8O A;  4LWD A;  2NSN A;  4P4H I;  2N00 A;  2NAQ A;  2NZ7 A;  3QF2 A;  2N97 A;  3KAT A;  2DBD A;  4IZ5 E;  2LWE A;  4EWI A;  2KN6 A;  4E9M A;  2G7R A;  3J6J A;  1DGN A;  4JQW A;  4UZ0 A;  2D96 A;  2KM6 A;  3EZQ A;  1DDF A;  3T6P A;  4JUP A;  2BBZ A;  1WH4 A;  2MN4 A;  3CRD A;  4F44 A;  4FH0 A;  2LWD A;  2VGQ A;  4QOB A;  2A9I A;  1D2Z A;  1CY5 A;  2MS7 A;  1CWW A;  4I16 A;  2MPC A;  3LQR A;  2BBR A;  4M9X A;  4A2Q A;  2M5V A;  1N3K A;  2MS8 A;  1UCP A;  1WXP A;  2F1S A;  1YGO A;  3CL3 A;  4ZBW A;  2N83 A;  2P1H A;  4O7Q A;  2OF5 A;  1ICH A;  2IB1 A; 
#chains in the Genus database with same CATH topology
 2MJM A;  3MOP G;  1E41 A;  1NGR A;  4N1J A;  2N80 A;  3EZQ B;  1C15 A;  2HM2 Q;  2DBG A;  4IZA B;  1Z6T A;  2L6A A;  1E3Y A;  4M9Z A;  3YGS C;  1WMG A;  2MB9 A;  2DBF A;  2XV9 A;  2DBH A;  2O71 A;  4RHW A;  2OF5 H;  4P4H A;  2B1W A;  2YQF A;  2GF5 A;  1D2Z B;  3J63 A;  4M9S A;  3YGS P;  4N1K A;  4O9F A;  4IZ7 B;  1A1W A;  1PN5 A;  3MOP K;  1A1Z A;  2L9M A;  4NQK A;  2DO9 A;  4N1L A;  2A5Y B;  4DWN A;  4O9L A;  2YVI A;  4A2W A;  4F42 A;  3LQQ A;  4RHW E;  2YU0 A;  2YGS A;  2LS7 A;  2N1F A;  2N7Z A;  3MOP A;  4O6X A;  1FAD A;  4D8O A;  4LWD A;  2NSN A;  4P4H I;  2N00 A;  2NAQ A;  2NZ7 A;  3QF2 A;  2N97 A;  3KAT A;  2DBD A;  4IZ5 E;  2LWE A;  4EWI A;  2KN6 A;  4E9M A;  2G7R A;  3J6J A;  1DGN A;  4JQW A;  4UZ0 A;  2D96 A;  2KM6 A;  3EZQ A;  1DDF A;  3T6P A;  4JUP A;  2BBZ A;  1WH4 A;  2MN4 A;  3CRD A;  4F44 A;  4FH0 A;  2LWD A;  2VGQ A;  4QOB A;  2A9I A;  1D2Z A;  1CY5 A;  2MS7 A;  1CWW A;  4I16 A;  2MPC A;  3LQR A;  2BBR A;  4M9X A;  4A2Q A;  2M5V A;  1N3K A;  2MS8 A;  1UCP A;  1WXP A;  2F1S A;  1YGO A;  3CL3 A;  4ZBW A;  2N83 A;  2P1H A;  4O7Q A;  2OF5 A;  1ICH A;  2IB1 A; 
#chains in the Genus database with same CATH homology
 2MJM A;  3MOP G;  1E41 A;  1NGR A;  4N1J A;  2N80 A;  3EZQ B;  1C15 A;  2HM2 Q;  2DBG A;  4IZA B;  1Z6T A;  2L6A A;  1E3Y A;  4M9Z A;  3YGS C;  1WMG A;  2MB9 A;  2DBF A;  2XV9 A;  2DBH A;  2O71 A;  4RHW A;  2OF5 H;  4P4H A;  2B1W A;  2YQF A;  2GF5 A;  1D2Z B;  3J63 A;  4M9S A;  3YGS P;  4N1K A;  4O9F A;  4IZ7 B;  1A1W A;  1PN5 A;  3MOP K;  1A1Z A;  2L9M A;  4NQK A;  2DO9 A;  4N1L A;  2A5Y B;  4DWN A;  4O9L A;  2YVI A;  4A2W A;  4F42 A;  3LQQ A;  4RHW E;  2YU0 A;  2YGS A;  2LS7 A;  2N1F A;  2N7Z A;  3MOP A;  4O6X A;  1FAD A;  4D8O A;  4LWD A;  2NSN A;  4P4H I;  2N00 A;  2NAQ A;  2NZ7 A;  3QF2 A;  2N97 A;  3KAT A;  2DBD A;  4IZ5 E;  2LWE A;  4EWI A;  2KN6 A;  4E9M A;  2G7R A;  3J6J A;  1DGN A;  4JQW A;  4UZ0 A;  2D96 A;  2KM6 A;  3EZQ A;  1DDF A;  3T6P A;  4JUP A;  2BBZ A;  1WH4 A;  2MN4 A;  3CRD A;  4F44 A;  4FH0 A;  2LWD A;  2VGQ A;  4QOB A;  2A9I A;  1D2Z A;  1CY5 A;  2MS7 A;  1CWW A;  4I16 A;  2MPC A;  3LQR A;  2BBR A;  4M9X A;  4A2Q A;  2M5V A;  1N3K A;  2MS8 A;  1UCP A;  1WXP A;  2F1S A;  1YGO A;  3CL3 A;  4ZBW A;  2N83 A;  2P1H A;  4O7Q A;  2OF5 A;  1ICH A;  2IB1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.