4F42A

Neurotrophin p75ntr intracellular domain
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
84
structure length
84
Chain Sequence
GNLYSSLPLTKREEVEKLLNGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWGAQDSATLDALLAALRRIQRADIVESLCS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI3 (59-62)3H1 (5-7)AH1 (10-20)AH2 (23-32)AH3 (36-41)AH4 (48-57)TI1 (41-44)TVIII1 (45-48)AH5 (64-74)AH6 (77-84)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Rattus norvegicus
publication title Structural insights into the allosteric activation mechanism of p75NTR
rcsb
molecule keywords Tumor necrosis factor receptor superfamily member 16
total genus 27
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2012-05-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4f42A00
2NSNA 1N3KA 2A5YB 3MOPK 1NGRA 2MS8A 1C15A 2F1SA 2N97A 2OF5H 2N1FA 4I16A 2KN6A 2VGQA 2L9MA 2G7RA 4F44A 4F42A 4M9XA 1YGOA 3QF2A 2A9IA 1WH4A 2L6AA 1CWWA 4A2QA 3YGSP 2LS7A 2DBDA 4QOBA 4P4HI 4IZAB 3CRDA 2GF5A 3T6PA 2MPCA 1A1ZA 4FH0A 4N1LA 2P1HA 3LQQA 2D96A 4RHWE 2N7ZA 4A2WA 2NAQA 2LWEA 3YGSC 1WXPA 3J6JA 4IZ7B 3EZQB 1E3YA 4N1KA 3MOPA 4M9SA 3EZQA 2LWDA 1CY5A 2MS7A 1FADA 4ZBWA 4RHWA 2N80A 1WMGA 2YU0A 2MB9A 4JUPA 2DBFA 2OF5A 1UCPA 2N00A 1A1WA 4IZ5E 2DBGA 4DWNA 1ICHA 2YVIA 3J63A 1D2ZB 4LWDA 4D8OA 2DBHA 4M9ZA 3KATA 1D2ZA 2O71A 4E9MA 1PN5A 2BBRA 4EWIA 3CL3A 2M5VA 2HM2Q 4P4HA 2IB1A 2MN4A 2NZ7A 2YQFA 4NQKA 4O7QA 3LQRA 2B1WA 1E41A 2YGSA 2BBZA 4O9LA 1DGNA 2DO9A 4UZ0A 3MOPG 2KM6A 2N83A 4O9FA 4O6XA 1Z6TA 4JQWA 4N1JA 1DDFA
chains in the Genus database with same CATH superfamily
2NSNA 1N3KA 2A5YB 3MOPK 1NGRA 2MS8A 1C15A 2F1SA 2N97A 2OF5H 2N1FA 4I16A 2KN6A 2VGQA 2L9MA 2G7RA 4F44A 4F42A 4M9XA 1YGOA 3QF2A 2A9IA 1WH4A 2L6AA 2MJMA 4A2QA 1CWWA 3YGSP 2LS7A 2DBDA 4QOBA 4P4HI 4IZAB 3CRDA 2GF5A 3T6PA 2MPCA 1A1ZA 4FH0A 4N1LA 2P1HA 3LQQA 2D96A 4RHWE 2N7ZA 4A2WA 2NAQA 2LWEA 3YGSC 1WXPA 3J6JA 4IZ7B 3EZQB 1E3YA 4N1KA 3MOPA 4M9SA 3EZQA 2LWDA 1CY5A 2MS7A 1FADA 4ZBWA 4RHWA 2N80A 1WMGA 2YU0A 2MB9A 4JUPA 2DBFA 2OF5A 1UCPA 2N00A 1A1WA 4IZ5E 2DBGA 4DWNA 1ICHA 2YVIA 3J63A 1D2ZB 4LWDA 4D8OA 2DBHA 4M9ZA 3KATA 1D2ZA 2O71A 4E9MA 1PN5A 2BBRA 4EWIA 3CL3A 2M5VA 2HM2Q 4P4HA 2IB1A 2MN4A 2NZ7A 2YQFA 4NQKA 4O7QA 3LQRA 2B1WA 1E41A 2XV9A 2YGSA 2BBZA 4O9LA 1DGNA 2DO9A 4UZ0A 3MOPG 2KM6A 2N83A 4O9FA 4O6XA 1Z6TA 4JQWA 4N1JA 1DDFA
chains in the Genus database with same CATH topology
2NSNA 1N3KA 2A5YB 3MOPK 1NGRA 2MS8A 1C15A 2F1SA 2N97A 2OF5H 2N1FA 4I16A 2KN6A 2VGQA 2L9MA 2G7RA 4F44A 4F42A 4M9XA 1YGOA 3QF2A 2A9IA 1WH4A 2L6AA 2MJMA 4A2QA 1CWWA 3YGSP 2LS7A 2DBDA 4QOBA 4P4HI 4IZAB 3CRDA 2GF5A 3T6PA 2MPCA 1A1ZA 4FH0A 4N1LA 2P1HA 3LQQA 2D96A 4RHWE 2N7ZA 4A2WA 2NAQA 2LWEA 3YGSC 1WXPA 3J6JA 4IZ7B 3EZQB 1E3YA 4N1KA 3MOPA 4M9SA 3EZQA 2LWDA 1CY5A 2MS7A 1FADA 4ZBWA 4RHWA 2N80A 1WMGA 2YU0A 2MB9A 4JUPA 2DBFA 2OF5A 1UCPA 2N00A 1A1WA 4IZ5E 2DBGA 4DWNA 1ICHA 2YVIA 3J63A 1D2ZB 4LWDA 4D8OA 2DBHA 4M9ZA 3KATA 1D2ZA 2O71A 4E9MA 1PN5A 2BBRA 4EWIA 3CL3A 2M5VA 2HM2Q 4P4HA 2IB1A 2MN4A 2NZ7A 2YQFA 4NQKA 4O7QA 3LQRA 2B1WA 1E41A 2XV9A 2YGSA 2BBZA 4O9LA 1DGNA 2DO9A 4UZ0A 3MOPG 2KM6A 2N83A 4O9FA 4O6XA 1Z6TA 4JQWA 4N1JA 1DDFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NSN A;  1N3K A;  2A5Y B;  3MOP K;  1NGR A;  2MS8 A;  1C15 A;  2F1S A;  2N97 A;  2OF5 H;  2N1F A;  4I16 A;  2KN6 A;  2VGQ A;  2L9M A;  2G7R A;  4F44 A;  4F42 A;  4M9X A;  1YGO A;  3QF2 A;  2A9I A;  1WH4 A;  2L6A A;  1CWW A;  4A2Q A;  3YGS P;  2LS7 A;  2DBD A;  4QOB A;  4P4H I;  4IZA B;  3CRD A;  2GF5 A;  3T6P A;  2MPC A;  1A1Z A;  4FH0 A;  4N1L A;  2P1H A;  3LQQ A;  2D96 A;  4RHW E;  2N7Z A;  4A2W A;  2NAQ A;  2LWE A;  3YGS C;  1WXP A;  3J6J A;  4IZ7 B;  3EZQ B;  1E3Y A;  4N1K A;  3MOP A;  4M9S A;  3EZQ A;  2LWD A;  1CY5 A;  2MS7 A;  1FAD A;  4ZBW A;  4RHW A;  2N80 A;  1WMG A;  2YU0 A;  2MB9 A;  4JUP A;  2DBF A;  2OF5 A;  1UCP A;  2N00 A;  1A1W A;  4IZ5 E;  2DBG A;  4DWN A;  1ICH A;  2YVI A;  3J63 A;  1D2Z B;  4LWD A;  4D8O A;  2DBH A;  4M9Z A;  3KAT A;  1D2Z A;  2O71 A;  4E9M A;  1PN5 A;  2BBR A;  4EWI A;  3CL3 A;  2M5V A;  2HM2 Q;  4P4H A;  2IB1 A;  2MN4 A;  2NZ7 A;  2YQF A;  4NQK A;  4O7Q A;  3LQR A;  2B1W A;  1E41 A;  2YGS A;  2BBZ A;  4O9L A;  1DGN A;  2DO9 A;  4UZ0 A;  3MOP G;  2KM6 A;  2N83 A;  4O9F A;  4O6X A;  1Z6T A;  4JQW A;  4N1J A;  1DDF A; 
#chains in the Genus database with same CATH topology
 2NSN A;  1N3K A;  2A5Y B;  3MOP K;  1NGR A;  2MS8 A;  1C15 A;  2F1S A;  2N97 A;  2OF5 H;  2N1F A;  4I16 A;  2KN6 A;  2VGQ A;  2L9M A;  2G7R A;  4F44 A;  4F42 A;  4M9X A;  1YGO A;  3QF2 A;  2A9I A;  1WH4 A;  2L6A A;  2MJM A;  4A2Q A;  1CWW A;  3YGS P;  2LS7 A;  2DBD A;  4QOB A;  4P4H I;  4IZA B;  3CRD A;  2GF5 A;  3T6P A;  2MPC A;  1A1Z A;  4FH0 A;  4N1L A;  2P1H A;  3LQQ A;  2D96 A;  4RHW E;  2N7Z A;  4A2W A;  2NAQ A;  2LWE A;  3YGS C;  1WXP A;  3J6J A;  4IZ7 B;  3EZQ B;  1E3Y A;  4N1K A;  3MOP A;  4M9S A;  3EZQ A;  2LWD A;  1CY5 A;  2MS7 A;  1FAD A;  4ZBW A;  4RHW A;  2N80 A;  1WMG A;  2YU0 A;  2MB9 A;  4JUP A;  2DBF A;  2OF5 A;  1UCP A;  2N00 A;  1A1W A;  4IZ5 E;  2DBG A;  4DWN A;  1ICH A;  2YVI A;  3J63 A;  1D2Z B;  4LWD A;  4D8O A;  2DBH A;  4M9Z A;  3KAT A;  1D2Z A;  2O71 A;  4E9M A;  1PN5 A;  2BBR A;  4EWI A;  3CL3 A;  2M5V A;  2HM2 Q;  4P4H A;  2IB1 A;  2MN4 A;  2NZ7 A;  2YQF A;  4NQK A;  4O7Q A;  3LQR A;  2B1W A;  1E41 A;  2XV9 A;  2YGS A;  2BBZ A;  4O9L A;  1DGN A;  2DO9 A;  4UZ0 A;  3MOP G;  2KM6 A;  2N83 A;  4O9F A;  4O6X A;  1Z6T A;  4JQW A;  4N1J A;  1DDF A; 
#chains in the Genus database with same CATH homology
 2NSN A;  1N3K A;  2A5Y B;  3MOP K;  1NGR A;  2MS8 A;  1C15 A;  2F1S A;  2N97 A;  2OF5 H;  2N1F A;  4I16 A;  2KN6 A;  2VGQ A;  2L9M A;  2G7R A;  4F44 A;  4F42 A;  4M9X A;  1YGO A;  3QF2 A;  2A9I A;  1WH4 A;  2L6A A;  2MJM A;  4A2Q A;  1CWW A;  3YGS P;  2LS7 A;  2DBD A;  4QOB A;  4P4H I;  4IZA B;  3CRD A;  2GF5 A;  3T6P A;  2MPC A;  1A1Z A;  4FH0 A;  4N1L A;  2P1H A;  3LQQ A;  2D96 A;  4RHW E;  2N7Z A;  4A2W A;  2NAQ A;  2LWE A;  3YGS C;  1WXP A;  3J6J A;  4IZ7 B;  3EZQ B;  1E3Y A;  4N1K A;  3MOP A;  4M9S A;  3EZQ A;  2LWD A;  1CY5 A;  2MS7 A;  1FAD A;  4ZBW A;  4RHW A;  2N80 A;  1WMG A;  2YU0 A;  2MB9 A;  4JUP A;  2DBF A;  2OF5 A;  1UCP A;  2N00 A;  1A1W A;  4IZ5 E;  2DBG A;  4DWN A;  1ICH A;  2YVI A;  3J63 A;  1D2Z B;  4LWD A;  4D8O A;  2DBH A;  4M9Z A;  3KAT A;  1D2Z A;  2O71 A;  4E9M A;  1PN5 A;  2BBR A;  4EWI A;  3CL3 A;  2M5V A;  2HM2 Q;  4P4H A;  2IB1 A;  2MN4 A;  2NZ7 A;  2YQF A;  4NQK A;  4O7Q A;  3LQR A;  2B1W A;  1E41 A;  2XV9 A;  2YGS A;  2BBZ A;  4O9L A;  1DGN A;  2DO9 A;  4UZ0 A;  3MOP G;  2KM6 A;  2N83 A;  4O9F A;  4O6X A;  1Z6T A;  4JQW A;  4N1J A;  1DDF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.