4LWDA

Human carma1 card domain
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
90
structure length
90
Chain Sequence
ALWENVECNRHMLSRYINPAKLTPYLRQCKVIDEQDEDEVLNAPMLPSKINRAGRLLDILHTKGQRGYVVFLESLEFYYPELYKLVTGKE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH4 (73-81)EMPTYAH1 (22-36)TVIII1 (66-69)3H1 (39-41)AH2 (42-49)AH3 (54-62)AH5 (83-98)TIV1 (50-53)TI1 (69-72)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Homo sapiens
publication title Structural Architecture of the CARMA1/Bcl10/MALT1 Signalosome: Nucleation-Induced Filamentous Assembly.
pubmed doi rcsb
molecule keywords Caspase recruitment domain-containing protein 11
total genus 33
structure length 90
sequence length 90
ec nomenclature
pdb deposition date 2013-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4lwdA00
4IZ5E 2N97A 2B1WA 2O71A 4O7QA 3YGSC 3CL3A 4I16A 1D2ZB 3KATA 1N3KA 4RHWE 1YGOA 4O9FA 4F42A 2VGQA 4EWIA 2NAQA 4JQWA 2LWEA 4P4HI 4LWDA 4QOBA 2KM6A 2MN4A 1WXPA 4IZ7B 1D2ZA 1WH4A 1E3YA 3CRDA 3J6JA 4D8OA 1DGNA 2N7ZA 2F1SA 4N1LA 2N1FA 4M9ZA 4NQKA 3EZQA 2MS8A 2NZ7A 2G7RA 2N80A 2MB9A 4F44A 3EZQB 1A1WA 2HM2Q 3LQRA 2YU0A 1UCPA 2DO9A 4P4HA 2L9MA 2A9IA 2LS7A 4RHWA 3MOPK 4N1KA 3J63A 4A2WA 2BBZA 4DWNA 2L6AA 4JUPA 2YVIA 4UZ0A 4FH0A 2BBRA 2A5YB 4N1JA 2LWDA 4O6XA 4E9MA 1CWWA 1PN5A 3MOPG 2DBDA 1ICHA 2KN6A 2P1HA 2NSNA 2MPCA 2D96A 2N83A 4A2QA 2OF5A 1FADA 1C15A 2N00A 4ZBWA 1A1ZA 1DDFA 2OF5H 4IZAB 2M5VA 2MS7A 3MOPA 2GF5A 4M9SA 2YGSA 1E41A 3QF2A 2DBGA 3LQQA 1WMGA 2YQFA 2IB1A 3T6PA 1Z6TA 4M9XA 2DBHA 2DBFA 1CY5A 1NGRA 3YGSP 4O9LA
chains in the Genus database with same CATH superfamily
4IZ5E 2XV9A 2N97A 2B1WA 2O71A 4O7QA 3YGSC 3CL3A 4I16A 1D2ZB 3KATA 1N3KA 4RHWE 1YGOA 4O9FA 4F42A 2VGQA 4EWIA 2NAQA 4JQWA 2LWEA 4P4HI 4LWDA 4QOBA 2KM6A 2MN4A 1WXPA 4IZ7B 1D2ZA 1WH4A 1E3YA 3CRDA 3J6JA 4D8OA 1DGNA 2N7ZA 2F1SA 4N1LA 2N1FA 4M9ZA 4NQKA 3EZQA 2MS8A 2NZ7A 2G7RA 2N80A 2MB9A 4F44A 3EZQB 1A1WA 3YGSP 2HM2Q 3LQRA 2YU0A 1UCPA 2DO9A 4P4HA 2L9MA 2A9IA 2LS7A 4RHWA 3MOPK 4N1KA 3J63A 4A2WA 2BBZA 4DWNA 2L6AA 4JUPA 2YVIA 4UZ0A 4FH0A 2BBRA 2A5YB 4N1JA 2LWDA 4O6XA 4E9MA 1CWWA 1PN5A 3MOPG 2DBDA 1ICHA 2KN6A 2P1HA 2NSNA 2MPCA 2D96A 2N83A 4A2QA 2OF5A 1FADA 1C15A 2N00A 4ZBWA 1A1ZA 1DDFA 2OF5H 4IZAB 2M5VA 2MS7A 3MOPA 2GF5A 4M9SA 2YGSA 1E41A 3QF2A 2DBGA 3LQQA 1WMGA 2YQFA 2IB1A 3T6PA 1Z6TA 4M9XA 2DBHA 2DBFA 1CY5A 1NGRA 2MJMA 4O9LA
chains in the Genus database with same CATH topology
4IZ5E 2XV9A 2N97A 2B1WA 2O71A 4O7QA 3YGSC 3CL3A 4I16A 1D2ZB 3KATA 1N3KA 4RHWE 1YGOA 4O9FA 4F42A 2VGQA 4EWIA 2NAQA 4JQWA 2LWEA 4P4HI 4LWDA 4QOBA 2KM6A 2MN4A 1WXPA 4IZ7B 1D2ZA 1WH4A 1E3YA 3CRDA 3J6JA 4D8OA 1DGNA 2N7ZA 2F1SA 4N1LA 2N1FA 4M9ZA 4NQKA 3EZQA 2MS8A 2NZ7A 2G7RA 2N80A 2MB9A 4F44A 3EZQB 1A1WA 3YGSP 2HM2Q 3LQRA 2YU0A 1UCPA 2DO9A 4P4HA 2L9MA 2A9IA 2LS7A 4RHWA 3MOPK 4N1KA 3J63A 4A2WA 2BBZA 4DWNA 2L6AA 4JUPA 2YVIA 4UZ0A 4FH0A 2BBRA 2A5YB 4N1JA 2LWDA 4O6XA 4E9MA 1CWWA 1PN5A 3MOPG 2DBDA 1ICHA 2KN6A 2P1HA 2NSNA 2MPCA 2D96A 2N83A 4A2QA 2OF5A 1FADA 1C15A 2N00A 4ZBWA 1A1ZA 1DDFA 2OF5H 4IZAB 2M5VA 2MS7A 3MOPA 2GF5A 4M9SA 2YGSA 1E41A 3QF2A 2DBGA 3LQQA 1WMGA 2YQFA 2IB1A 3T6PA 1Z6TA 4M9XA 2DBHA 2DBFA 1CY5A 1NGRA 2MJMA 4O9LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IZ5 E;  2N97 A;  2B1W A;  2O71 A;  4O7Q A;  3YGS C;  3CL3 A;  4I16 A;  1D2Z B;  3KAT A;  1N3K A;  4RHW E;  1YGO A;  4O9F A;  4F42 A;  2VGQ A;  4EWI A;  2NAQ A;  4JQW A;  2LWE A;  4P4H I;  4LWD A;  4QOB A;  2KM6 A;  2MN4 A;  1WXP A;  4IZ7 B;  1D2Z A;  1WH4 A;  1E3Y A;  3CRD A;  3J6J A;  4D8O A;  1DGN A;  2N7Z A;  2F1S A;  4N1L A;  2N1F A;  4M9Z A;  4NQK A;  3EZQ A;  2MS8 A;  2NZ7 A;  2G7R A;  2N80 A;  2MB9 A;  4F44 A;  3EZQ B;  1A1W A;  2HM2 Q;  3LQR A;  2YU0 A;  1UCP A;  2DO9 A;  4P4H A;  2L9M A;  2A9I A;  2LS7 A;  4RHW A;  3MOP K;  4N1K A;  3J63 A;  4A2W A;  2BBZ A;  4DWN A;  2L6A A;  4JUP A;  2YVI A;  4UZ0 A;  4FH0 A;  2BBR A;  2A5Y B;  4N1J A;  2LWD A;  4O6X A;  4E9M A;  1CWW A;  1PN5 A;  3MOP G;  2DBD A;  1ICH A;  2KN6 A;  2P1H A;  2NSN A;  2MPC A;  2D96 A;  2N83 A;  4A2Q A;  2OF5 A;  1FAD A;  1C15 A;  2N00 A;  4ZBW A;  1A1Z A;  1DDF A;  2OF5 H;  4IZA B;  2M5V A;  2MS7 A;  3MOP A;  2GF5 A;  4M9S A;  2YGS A;  1E41 A;  3QF2 A;  2DBG A;  3LQQ A;  1WMG A;  2YQF A;  2IB1 A;  3T6P A;  1Z6T A;  4M9X A;  2DBH A;  2DBF A;  1CY5 A;  1NGR A;  3YGS P;  4O9L A; 
#chains in the Genus database with same CATH topology
 4IZ5 E;  2XV9 A;  2N97 A;  2B1W A;  2O71 A;  4O7Q A;  3YGS C;  3CL3 A;  4I16 A;  1D2Z B;  3KAT A;  1N3K A;  4RHW E;  1YGO A;  4O9F A;  4F42 A;  2VGQ A;  4EWI A;  2NAQ A;  4JQW A;  2LWE A;  4P4H I;  4LWD A;  4QOB A;  2KM6 A;  2MN4 A;  1WXP A;  4IZ7 B;  1D2Z A;  1WH4 A;  1E3Y A;  3CRD A;  3J6J A;  4D8O A;  1DGN A;  2N7Z A;  2F1S A;  4N1L A;  2N1F A;  4M9Z A;  4NQK A;  3EZQ A;  2MS8 A;  2NZ7 A;  2G7R A;  2N80 A;  2MB9 A;  4F44 A;  3EZQ B;  1A1W A;  3YGS P;  2HM2 Q;  3LQR A;  2YU0 A;  1UCP A;  2DO9 A;  4P4H A;  2L9M A;  2A9I A;  2LS7 A;  4RHW A;  3MOP K;  4N1K A;  3J63 A;  4A2W A;  2BBZ A;  4DWN A;  2L6A A;  4JUP A;  2YVI A;  4UZ0 A;  4FH0 A;  2BBR A;  2A5Y B;  4N1J A;  2LWD A;  4O6X A;  4E9M A;  1CWW A;  1PN5 A;  3MOP G;  2DBD A;  1ICH A;  2KN6 A;  2P1H A;  2NSN A;  2MPC A;  2D96 A;  2N83 A;  4A2Q A;  2OF5 A;  1FAD A;  1C15 A;  2N00 A;  4ZBW A;  1A1Z A;  1DDF A;  2OF5 H;  4IZA B;  2M5V A;  2MS7 A;  3MOP A;  2GF5 A;  4M9S A;  2YGS A;  1E41 A;  3QF2 A;  2DBG A;  3LQQ A;  1WMG A;  2YQF A;  2IB1 A;  3T6P A;  1Z6T A;  4M9X A;  2DBH A;  2DBF A;  1CY5 A;  1NGR A;  2MJM A;  4O9L A; 
#chains in the Genus database with same CATH homology
 4IZ5 E;  2XV9 A;  2N97 A;  2B1W A;  2O71 A;  4O7Q A;  3YGS C;  3CL3 A;  4I16 A;  1D2Z B;  3KAT A;  1N3K A;  4RHW E;  1YGO A;  4O9F A;  4F42 A;  2VGQ A;  4EWI A;  2NAQ A;  4JQW A;  2LWE A;  4P4H I;  4LWD A;  4QOB A;  2KM6 A;  2MN4 A;  1WXP A;  4IZ7 B;  1D2Z A;  1WH4 A;  1E3Y A;  3CRD A;  3J6J A;  4D8O A;  1DGN A;  2N7Z A;  2F1S A;  4N1L A;  2N1F A;  4M9Z A;  4NQK A;  3EZQ A;  2MS8 A;  2NZ7 A;  2G7R A;  2N80 A;  2MB9 A;  4F44 A;  3EZQ B;  1A1W A;  3YGS P;  2HM2 Q;  3LQR A;  2YU0 A;  1UCP A;  2DO9 A;  4P4H A;  2L9M A;  2A9I A;  2LS7 A;  4RHW A;  3MOP K;  4N1K A;  3J63 A;  4A2W A;  2BBZ A;  4DWN A;  2L6A A;  4JUP A;  2YVI A;  4UZ0 A;  4FH0 A;  2BBR A;  2A5Y B;  4N1J A;  2LWD A;  4O6X A;  4E9M A;  1CWW A;  1PN5 A;  3MOP G;  2DBD A;  1ICH A;  2KN6 A;  2P1H A;  2NSN A;  2MPC A;  2D96 A;  2N83 A;  4A2Q A;  2OF5 A;  1FAD A;  1C15 A;  2N00 A;  4ZBW A;  1A1Z A;  1DDF A;  2OF5 H;  4IZA B;  2M5V A;  2MS7 A;  3MOP A;  2GF5 A;  4M9S A;  2YGS A;  1E41 A;  3QF2 A;  2DBG A;  3LQQ A;  1WMG A;  2YQF A;  2IB1 A;  3T6P A;  1Z6T A;  4M9X A;  2DBH A;  2DBF A;  1CY5 A;  1NGR A;  2MJM A;  4O9L A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.