4N1JA

Crystal structures of nlrp14 pyrin domain reveal a conformational switch mechanism, regulating its molecular interactions
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
91
structure length
91
Chain Sequence
SSSFFPDFGLLLYLEELNKEELNTFKLFLKETMEPEHGLTPWNEVKKARREDLANLMKKYYPGEKAWSVSLKIFGKMNLKDLCERAKEEIN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (9-12)TI2 (10-13)AH1 (14-21)AH3 (46-52)AH2 (24-37)TII'1 (42-45)AH5 (69-95)TI4 (39-42)TIV1 (40-43)AH4 (55-60)3H1 (61-64)TVIII1 (64-67)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Homo sapiens
publication title Structures of the NLRP14 pyrin domain reveal a conformational switch mechanism regulating its molecular interactions.
pubmed doi rcsb
molecule keywords NACHT, LRR and PYD domains-containing protein 14
total genus 27
structure length 91
sequence length 91
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4n1jA00
1DDFA 4A2WA 1CWWA 4O7QA 1WMGA 2N00A 4IZAB 2B1WA 2G7RA 4N1KA 1UCPA 1FADA 3T6PA 2D96A 2P1HA 4D8OA 4P4HI 3MOPA 2LWDA 4E9MA 2LS7A 3MOPK 4UZ0A 2NZ7A 2YVIA 1DGNA 2HM2Q 3KATA 4LWDA 4NQKA 3LQRA 2L6AA 2BBZA 2GF5A 2N83A 2F1SA 4QOBA 4O9LA 2DBDA 3QF2A 3YGSC 2MN4A 3CRDA 4F44A 4O9FA 3YGSP 2NAQA 1C15A 2IB1A 4N1LA 3CL3A 1YGOA 2BBRA 1CY5A 1ICHA 2M5VA 1PN5A 4N1JA 2O71A 2KN6A 4M9SA 4IZ7B 2L9MA 2DBHA 2MB9A 2DBGA 2MPCA 4RHWE 2A9IA 4IZ5E 1E3YA 2YU0A 4JUPA 1D2ZB 1D2ZA 2MS8A 2N80A 3MOPG 1N3KA 2VGQA 1A1ZA 4FH0A 4F42A 4I16A 2A5YB 3J63A 3LQQA 2N1FA 3EZQB 2N7ZA 2YQFA 2KM6A 3J6JA 4EWIA 2YGSA 1NGRA 2LWEA 4O6XA 2MS7A 2DO9A 2OF5H 1WH4A 4RHWA 1WXPA 4A2QA 2NSNA 2N97A 1E41A 4M9ZA 1Z6TA 4P4HA 4DWNA 4M9XA 2DBFA 1A1WA 4ZBWA 2OF5A 3EZQA 4JQWA
chains in the Genus database with same CATH superfamily
1DDFA 4A2WA 1CWWA 4O7QA 1WMGA 2N00A 4IZAB 2B1WA 2G7RA 4N1KA 1UCPA 1FADA 3T6PA 2D96A 2P1HA 4D8OA 4P4HI 3MOPA 2LWDA 4E9MA 2LS7A 3MOPK 4UZ0A 2NZ7A 2YVIA 2XV9A 1DGNA 2HM2Q 3KATA 4LWDA 4NQKA 3LQRA 2L6AA 2BBZA 2GF5A 2N83A 2F1SA 4QOBA 4O9LA 2DBDA 3QF2A 3YGSC 2MN4A 3CRDA 4F44A 4O9FA 3YGSP 2NAQA 1C15A 2IB1A 4N1LA 3CL3A 1YGOA 2BBRA 1CY5A 1ICHA 2M5VA 1PN5A 4N1JA 2O71A 2KN6A 4M9SA 4IZ7B 2L9MA 2DBHA 2MB9A 2DBGA 2MPCA 4RHWE 2MJMA 2A9IA 4IZ5E 1E3YA 2YU0A 4JUPA 1D2ZB 1D2ZA 2MS8A 2N80A 3MOPG 1N3KA 2VGQA 1A1ZA 4FH0A 4F42A 4I16A 2A5YB 3J63A 3LQQA 2N1FA 3EZQB 2N7ZA 2YQFA 2KM6A 3J6JA 4EWIA 2YGSA 1NGRA 2LWEA 4O6XA 2MS7A 2DO9A 2OF5H 1WH4A 4RHWA 1WXPA 4A2QA 2NSNA 2N97A 1E41A 4M9ZA 1Z6TA 4P4HA 4DWNA 4M9XA 2DBFA 1A1WA 4ZBWA 2OF5A 3EZQA 4JQWA
chains in the Genus database with same CATH topology
1DDFA 4A2WA 1CWWA 4O7QA 1WMGA 2N00A 4IZAB 2B1WA 2G7RA 4N1KA 1UCPA 1FADA 3T6PA 2D96A 2P1HA 4D8OA 4P4HI 3MOPA 2LWDA 4E9MA 2LS7A 3MOPK 4UZ0A 2NZ7A 2YVIA 2XV9A 1DGNA 2HM2Q 3KATA 4LWDA 4NQKA 3LQRA 2L6AA 2BBZA 2GF5A 2N83A 2F1SA 4QOBA 4O9LA 2DBDA 3QF2A 3YGSC 2MN4A 3CRDA 4F44A 4O9FA 3YGSP 2NAQA 1C15A 2IB1A 4N1LA 3CL3A 1YGOA 2BBRA 1CY5A 1ICHA 2M5VA 1PN5A 4N1JA 2O71A 2KN6A 4M9SA 4IZ7B 2L9MA 2DBHA 2MB9A 2DBGA 2MPCA 4RHWE 2MJMA 2A9IA 4IZ5E 1E3YA 2YU0A 4JUPA 1D2ZB 1D2ZA 2MS8A 2N80A 3MOPG 1N3KA 2VGQA 1A1ZA 4FH0A 4F42A 4I16A 2A5YB 3J63A 3LQQA 2N1FA 3EZQB 2N7ZA 2YQFA 2KM6A 3J6JA 4EWIA 2YGSA 1NGRA 2LWEA 4O6XA 2MS7A 2DO9A 2OF5H 1WH4A 4RHWA 1WXPA 4A2QA 2NSNA 2N97A 1E41A 4M9ZA 1Z6TA 4P4HA 4DWNA 4M9XA 2DBFA 1A1WA 4ZBWA 2OF5A 3EZQA 4JQWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DDF A;  4A2W A;  1CWW A;  4O7Q A;  1WMG A;  2N00 A;  4IZA B;  2B1W A;  2G7R A;  4N1K A;  1UCP A;  1FAD A;  3T6P A;  2D96 A;  2P1H A;  4D8O A;  4P4H I;  3MOP A;  2LWD A;  4E9M A;  2LS7 A;  3MOP K;  4UZ0 A;  2NZ7 A;  2YVI A;  1DGN A;  2HM2 Q;  3KAT A;  4LWD A;  4NQK A;  3LQR A;  2L6A A;  2BBZ A;  2GF5 A;  2N83 A;  2F1S A;  4QOB A;  4O9L A;  2DBD A;  3QF2 A;  3YGS C;  2MN4 A;  3CRD A;  4F44 A;  4O9F A;  3YGS P;  2NAQ A;  1C15 A;  2IB1 A;  4N1L A;  3CL3 A;  1YGO A;  2BBR A;  1CY5 A;  1ICH A;  2M5V A;  1PN5 A;  4N1J A;  2O71 A;  2KN6 A;  4M9S A;  4IZ7 B;  2L9M A;  2DBH A;  2MB9 A;  2DBG A;  2MPC A;  4RHW E;  2A9I A;  4IZ5 E;  1E3Y A;  2YU0 A;  4JUP A;  1D2Z B;  1D2Z A;  2MS8 A;  2N80 A;  3MOP G;  1N3K A;  2VGQ A;  1A1Z A;  4FH0 A;  4F42 A;  4I16 A;  2A5Y B;  3J63 A;  3LQQ A;  2N1F A;  3EZQ B;  2N7Z A;  2YQF A;  2KM6 A;  3J6J A;  4EWI A;  2YGS A;  1NGR A;  2LWE A;  4O6X A;  2MS7 A;  2DO9 A;  2OF5 H;  1WH4 A;  4RHW A;  1WXP A;  4A2Q A;  2NSN A;  2N97 A;  1E41 A;  4M9Z A;  1Z6T A;  4P4H A;  4DWN A;  4M9X A;  2DBF A;  1A1W A;  4ZBW A;  2OF5 A;  3EZQ A;  4JQW A; 
#chains in the Genus database with same CATH topology
 1DDF A;  4A2W A;  1CWW A;  4O7Q A;  1WMG A;  2N00 A;  4IZA B;  2B1W A;  2G7R A;  4N1K A;  1UCP A;  1FAD A;  3T6P A;  2D96 A;  2P1H A;  4D8O A;  4P4H I;  3MOP A;  2LWD A;  4E9M A;  2LS7 A;  3MOP K;  4UZ0 A;  2NZ7 A;  2YVI A;  2XV9 A;  1DGN A;  2HM2 Q;  3KAT A;  4LWD A;  4NQK A;  3LQR A;  2L6A A;  2BBZ A;  2GF5 A;  2N83 A;  2F1S A;  4QOB A;  4O9L A;  2DBD A;  3QF2 A;  3YGS C;  2MN4 A;  3CRD A;  4F44 A;  4O9F A;  3YGS P;  2NAQ A;  1C15 A;  2IB1 A;  4N1L A;  3CL3 A;  1YGO A;  2BBR A;  1CY5 A;  1ICH A;  2M5V A;  1PN5 A;  4N1J A;  2O71 A;  2KN6 A;  4M9S A;  4IZ7 B;  2L9M A;  2DBH A;  2MB9 A;  2DBG A;  2MPC A;  4RHW E;  2MJM A;  2A9I A;  4IZ5 E;  1E3Y A;  2YU0 A;  4JUP A;  1D2Z B;  1D2Z A;  2MS8 A;  2N80 A;  3MOP G;  1N3K A;  2VGQ A;  1A1Z A;  4FH0 A;  4F42 A;  4I16 A;  2A5Y B;  3J63 A;  3LQQ A;  2N1F A;  3EZQ B;  2N7Z A;  2YQF A;  2KM6 A;  3J6J A;  4EWI A;  2YGS A;  1NGR A;  2LWE A;  4O6X A;  2MS7 A;  2DO9 A;  2OF5 H;  1WH4 A;  4RHW A;  1WXP A;  4A2Q A;  2NSN A;  2N97 A;  1E41 A;  4M9Z A;  1Z6T A;  4P4H A;  4DWN A;  4M9X A;  2DBF A;  1A1W A;  4ZBW A;  2OF5 A;  3EZQ A;  4JQW A; 
#chains in the Genus database with same CATH homology
 1DDF A;  4A2W A;  1CWW A;  4O7Q A;  1WMG A;  2N00 A;  4IZA B;  2B1W A;  2G7R A;  4N1K A;  1UCP A;  1FAD A;  3T6P A;  2D96 A;  2P1H A;  4D8O A;  4P4H I;  3MOP A;  2LWD A;  4E9M A;  2LS7 A;  3MOP K;  4UZ0 A;  2NZ7 A;  2YVI A;  2XV9 A;  1DGN A;  2HM2 Q;  3KAT A;  4LWD A;  4NQK A;  3LQR A;  2L6A A;  2BBZ A;  2GF5 A;  2N83 A;  2F1S A;  4QOB A;  4O9L A;  2DBD A;  3QF2 A;  3YGS C;  2MN4 A;  3CRD A;  4F44 A;  4O9F A;  3YGS P;  2NAQ A;  1C15 A;  2IB1 A;  4N1L A;  3CL3 A;  1YGO A;  2BBR A;  1CY5 A;  1ICH A;  2M5V A;  1PN5 A;  4N1J A;  2O71 A;  2KN6 A;  4M9S A;  4IZ7 B;  2L9M A;  2DBH A;  2MB9 A;  2DBG A;  2MPC A;  4RHW E;  2MJM A;  2A9I A;  4IZ5 E;  1E3Y A;  2YU0 A;  4JUP A;  1D2Z B;  1D2Z A;  2MS8 A;  2N80 A;  3MOP G;  1N3K A;  2VGQ A;  1A1Z A;  4FH0 A;  4F42 A;  4I16 A;  2A5Y B;  3J63 A;  3LQQ A;  2N1F A;  3EZQ B;  2N7Z A;  2YQF A;  2KM6 A;  3J6J A;  4EWI A;  2YGS A;  1NGR A;  2LWE A;  4O6X A;  2MS7 A;  2DO9 A;  2OF5 H;  1WH4 A;  4RHW A;  1WXP A;  4A2Q A;  2NSN A;  2N97 A;  1E41 A;  4M9Z A;  1Z6T A;  4P4H A;  4DWN A;  4M9X A;  2DBF A;  1A1W A;  4ZBW A;  2OF5 A;  3EZQ A;  4JQW A; 
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