The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
58
|
sequence length |
188
|
structure length |
188
|
Chain Sequence |
MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for ubiquitin-mediated antiviral signal activation by RIG-I.
pubmed doi rcsb |
| molecule keywords |
Probable ATP-dependent RNA helicase DDX58
|
| molecule tags |
Hydrolase/apoptosis
|
| source organism |
Homo sapiens
|
| total genus |
58
|
| structure length |
188
|
| sequence length |
188
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
3.6.4.13: RNA helicase. |
| pdb deposition date | 2013-11-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16739 | CARD_2 | Caspase recruitment domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas | ||
| Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas |
#chains in the Genus database with same CATH superfamily 4UZ0 A; 2DBF A; 1CY5 A; 4O9F A; 1WH4 A; 2L6A A; 4RHW A; 2MB9 A; 2MS8 A; 2LWE A; 2YQF A; 4IZ5 E; 4NQK A; 2KN6 A; 2A9I A; 1DGN A; 2DBH A; 4EWI A; 1FAD A; 2P1H A; 2OF5 A; 2DBG A; 2N80 A; 2LS7 A; 4DWN A; 2N1F A; 4JUP A; 2HM2 Q; 4M9X A; 2N7Z A; 2F1S A; 2A5Y B; 3MOP K; 1ICH A; 1A1W A; 2MN4 A; 2LWD A; 3MOP A; 3EZQ B; 1UCP A; 1C15 A; 3LQR A; 2B1W A; 1WMG A; 4RHW E; 2KM6 A; 4FH0 A; 4JQW A; 2YU0 A; 4A2Q A; 4M9S A; 3T6P A; 1Z6T A; 3MOP G; 2M5V A; 2NSN A; 1NGR A; 2VGQ A; 4P4H I; 1CWW A; 4I16 A; 2DO9 A; 2GF5 A; 2YGS A; 1D2Z B; 2N97 A; 4D8O A; 2N00 A; 4P4H A; 1YGO A; 1E41 A; 4O6X A; 3LQQ A; 1E3Y A; 4F44 A; 4O9L A; 3CL3 A; 3CRD A; 4O7Q A; 4N1L A; 4ZBW A; 4QOB A; 3J63 A; 2OF5 H; 2MPC A; 4M9Z A; 4N1K A; 2DBD A; 2NAQ A; 3YGS P; 1N3K A; 2BBR A; 2G7R A; 2O71 A; 2D96 A; 4N1J A; 1A1Z A; 3J6J A; 2NZ7 A; 3YGS C; 3QF2 A; 1DDF A; 2L9M A; 2BBZ A; 1D2Z A; 4IZA B; 4F42 A; 2IB1 A; 4A2W A; 1WXP A; 2N83 A; 4LWD A; 3EZQ A; 4IZ7 B; 3KAT A; 2MS7 A; 4E9M A; 1PN5 A; 2YVI A; #chains in the Genus database with same CATH topology 4UZ0 A; 2DBF A; 2MJM A; 1CY5 A; 4O9F A; 1WH4 A; 2L6A A; 4RHW A; 2MB9 A; 2MS8 A; 2LWE A; 2YQF A; 4IZ5 E; 4NQK A; 2KN6 A; 2A9I A; 1DGN A; 2DBH A; 4EWI A; 1FAD A; 2P1H A; 2OF5 A; 2DBG A; 2N80 A; 2LS7 A; 4DWN A; 2N1F A; 4JUP A; 2HM2 Q; 4M9X A; 2N7Z A; 2F1S A; 2A5Y B; 3MOP K; 1ICH A; 1A1W A; 2MN4 A; 2LWD A; 3MOP A; 3EZQ B; 1UCP A; 1C15 A; 3LQR A; 2B1W A; 1WMG A; 4RHW E; 2KM6 A; 4FH0 A; 4JQW A; 2YU0 A; 4A2Q A; 4M9S A; 2XV9 A; 3T6P A; 1Z6T A; 3MOP G; 2M5V A; 2NSN A; 1NGR A; 2VGQ A; 4P4H I; 1CWW A; 4I16 A; 2DO9 A; 2GF5 A; 2YGS A; 1D2Z B; 2N97 A; 4D8O A; 2N00 A; 4P4H A; 1YGO A; 1E41 A; 4O6X A; 3LQQ A; 1E3Y A; 4F44 A; 4O9L A; 3CL3 A; 3CRD A; 4O7Q A; 4N1L A; 4ZBW A; 4QOB A; 3J63 A; 2OF5 H; 2MPC A; 4M9Z A; 4N1K A; 2DBD A; 2NAQ A; 3YGS P; 1N3K A; 2BBR A; 2G7R A; 2O71 A; 2D96 A; 4N1J A; 1A1Z A; 3J6J A; 2NZ7 A; 3YGS C; 3QF2 A; 1DDF A; 2L9M A; 2BBZ A; 1D2Z A; 4IZA B; 4F42 A; 2IB1 A; 4A2W A; 1WXP A; 2N83 A; 4LWD A; 3EZQ A; 4IZ7 B; 3KAT A; 2MS7 A; 4E9M A; 1PN5 A; 2YVI A; #chains in the Genus database with same CATH homology 4UZ0 A; 2DBF A; 2MJM A; 1CY5 A; 4O9F A; 1WH4 A; 2L6A A; 4RHW A; 2MB9 A; 2MS8 A; 2LWE A; 2YQF A; 4IZ5 E; 4NQK A; 2KN6 A; 2A9I A; 1DGN A; 2DBH A; 4EWI A; 1FAD A; 2P1H A; 2OF5 A; 2DBG A; 2N80 A; 2LS7 A; 4DWN A; 2N1F A; 4JUP A; 2HM2 Q; 4M9X A; 2N7Z A; 2F1S A; 2A5Y B; 3MOP K; 1ICH A; 1A1W A; 2MN4 A; 2LWD A; 3MOP A; 3EZQ B; 1UCP A; 1C15 A; 3LQR A; 2B1W A; 1WMG A; 4RHW E; 2KM6 A; 4FH0 A; 4JQW A; 2YU0 A; 4A2Q A; 4M9S A; 2XV9 A; 3T6P A; 1Z6T A; 3MOP G; 2M5V A; 2NSN A; 1NGR A; 2VGQ A; 4P4H I; 1CWW A; 4I16 A; 2DO9 A; 2GF5 A; 2YGS A; 1D2Z B; 2N97 A; 4D8O A; 2N00 A; 4P4H A; 1YGO A; 1E41 A; 4O6X A; 3LQQ A; 1E3Y A; 4F44 A; 4O9L A; 3CL3 A; 3CRD A; 4O7Q A; 4N1L A; 4ZBW A; 4QOB A; 3J63 A; 2OF5 H; 2MPC A; 4M9Z A; 4N1K A; 2DBD A; 2NAQ A; 3YGS P; 1N3K A; 2BBR A; 2G7R A; 2O71 A; 2D96 A; 4N1J A; 1A1Z A; 3J6J A; 2NZ7 A; 3YGS C; 3QF2 A; 1DDF A; 2L9M A; 2BBZ A; 1D2Z A; 4IZA B; 4F42 A; 2IB1 A; 4A2W A; 1WXP A; 2N83 A; 4LWD A; 3EZQ A; 4IZ7 B; 3KAT A; 2MS7 A; 4E9M A; 1PN5 A; 2YVI A;
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