4QOBA

Crystal structure of cpop1
Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
87
structure length
87
Chain Sequence
TKREAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASYYEDYAAELVVAVLRDMRMLEEAARLQRAA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (17-28)AH5 (62-76)EMPTYTII1 (33-36)AH4 (49-60)AH6 (79-88)AH1 (3-14)AH3 (41-46)Updating...
connected with : NaN
molecule tags Protein binding
source organism Homo sapiens
publication title Crystal structure of cPOP1
rcsb
molecule keywords Pyrin domain-containing protein 1
total genus 34
structure length 87
sequence length 87
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-06-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4qobA00
2OF5A 1WH4A 3CRDA 4M9SA 4FH0A 4RHWA 4QOBA 4LWDA 1N3KA 2DBFA 2L6AA 2KM6A 3EZQB 2O71A 4NQKA 1PN5A 4JUPA 2YVIA 2BBRA 2NZ7A 4UZ0A 3CL3A 2BBZA 2DO9A 3J6JA 4O6XA 1E3YA 2B1WA 1CY5A 2N97A 2LWDA 4I16A 1C15A 4RHWE 2D96A 2L9MA 2YQFA 1CWWA 4N1LA 4DWNA 2DBDA 3MOPK 1WMGA 3YGSP 2N80A 4F42A 2A9IA 3EZQA 4IZ7B 2DBGA 3LQQA 3QF2A 1Z6TA 2MS7A 4A2QA 2HM2Q 2YGSA 4JQWA 1WXPA 2G7RA 2KN6A 3MOPA 3YGSC 1DDFA 1E41A 2N00A 1A1WA 4M9XA 2YU0A 1YGOA 2VGQA 2GF5A 2P1HA 2IB1A 4N1KA 3T6PA 4M9ZA 2M5VA 4D8OA 1FADA 2NAQA 1NGRA 1D2ZB 1ICHA 2N1FA 2OF5H 2MN4A 4IZ5E 1A1ZA 2F1SA 4P4HA 2N7ZA 1D2ZA 3LQRA 4EWIA 4N1JA 2MPCA 2MB9A 4F44A 4IZAB 4A2WA 4O9FA 2DBHA 2MS8A 2N83A 4E9MA 1DGNA 2LWEA 2LS7A 3KATA 2A5YB 2NSNA 4O9LA 4P4HI 4O7QA 1UCPA 3MOPG 3J63A 4ZBWA
chains in the Genus database with same CATH superfamily
2OF5A 1WH4A 3CRDA 4M9SA 4FH0A 4RHWA 4QOBA 4LWDA 1N3KA 2DBFA 2L6AA 2KM6A 3EZQB 2O71A 4NQKA 1PN5A 4JUPA 2YVIA 2BBRA 2NZ7A 4UZ0A 3CL3A 2BBZA 2DO9A 3J6JA 4O6XA 1E3YA 2B1WA 1CY5A 2N97A 2LWDA 4I16A 1C15A 2MJMA 4RHWE 2D96A 2L9MA 2YQFA 1CWWA 4N1LA 4DWNA 2DBDA 3MOPK 1WMGA 3YGSP 2N80A 4F42A 2A9IA 3EZQA 4IZ7B 2DBGA 3LQQA 3QF2A 1Z6TA 2MS7A 4A2QA 2HM2Q 2YGSA 4JQWA 1WXPA 2G7RA 2KN6A 3MOPA 3YGSC 1DDFA 1E41A 2N00A 1A1WA 4M9XA 2YU0A 1YGOA 2VGQA 2GF5A 2P1HA 2IB1A 4N1KA 3T6PA 4M9ZA 2M5VA 4D8OA 1FADA 2NAQA 2XV9A 1NGRA 1D2ZB 1ICHA 2N1FA 2OF5H 2MN4A 4IZ5E 1A1ZA 2F1SA 4P4HA 2N7ZA 1D2ZA 3LQRA 4EWIA 4N1JA 2MPCA 2MB9A 4F44A 4IZAB 4A2WA 4O9FA 2DBHA 2MS8A 2N83A 4E9MA 1DGNA 2LWEA 2LS7A 3KATA 2A5YB 2NSNA 4O9LA 4P4HI 4O7QA 1UCPA 3MOPG 3J63A 4ZBWA
chains in the Genus database with same CATH topology
2OF5A 1WH4A 3CRDA 4M9SA 4FH0A 4RHWA 4QOBA 4LWDA 1N3KA 2DBFA 2L6AA 2KM6A 3EZQB 2O71A 4NQKA 1PN5A 4JUPA 2YVIA 2BBRA 2NZ7A 4UZ0A 3CL3A 2BBZA 2DO9A 3J6JA 4O6XA 1E3YA 2B1WA 1CY5A 2N97A 2LWDA 4I16A 1C15A 2MJMA 4RHWE 2D96A 2L9MA 2YQFA 1CWWA 4N1LA 4DWNA 2DBDA 3MOPK 1WMGA 3YGSP 2N80A 4F42A 2A9IA 3EZQA 4IZ7B 2DBGA 3LQQA 3QF2A 1Z6TA 2MS7A 4A2QA 2HM2Q 2YGSA 4JQWA 1WXPA 2G7RA 2KN6A 3MOPA 3YGSC 1DDFA 1E41A 2N00A 1A1WA 4M9XA 2YU0A 1YGOA 2VGQA 2GF5A 2P1HA 2IB1A 4N1KA 3T6PA 4M9ZA 2M5VA 4D8OA 1FADA 2NAQA 2XV9A 1NGRA 1D2ZB 1ICHA 2N1FA 2OF5H 2MN4A 4IZ5E 1A1ZA 2F1SA 4P4HA 2N7ZA 1D2ZA 3LQRA 4EWIA 4N1JA 2MPCA 2MB9A 4F44A 4IZAB 4A2WA 4O9FA 2DBHA 2MS8A 2N83A 4E9MA 1DGNA 2LWEA 2LS7A 3KATA 2A5YB 2NSNA 4O9LA 4P4HI 4O7QA 1UCPA 3MOPG 3J63A 4ZBWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OF5 A;  1WH4 A;  3CRD A;  4M9S A;  4FH0 A;  4RHW A;  4QOB A;  4LWD A;  1N3K A;  2DBF A;  2L6A A;  2KM6 A;  3EZQ B;  2O71 A;  4NQK A;  1PN5 A;  4JUP A;  2YVI A;  2BBR A;  2NZ7 A;  4UZ0 A;  3CL3 A;  2BBZ A;  2DO9 A;  3J6J A;  4O6X A;  1E3Y A;  2B1W A;  1CY5 A;  2N97 A;  2LWD A;  4I16 A;  1C15 A;  4RHW E;  2D96 A;  2L9M A;  2YQF A;  1CWW A;  4N1L A;  4DWN A;  2DBD A;  3MOP K;  1WMG A;  3YGS P;  2N80 A;  4F42 A;  2A9I A;  3EZQ A;  4IZ7 B;  2DBG A;  3LQQ A;  3QF2 A;  1Z6T A;  2MS7 A;  4A2Q A;  2HM2 Q;  2YGS A;  4JQW A;  1WXP A;  2G7R A;  2KN6 A;  3MOP A;  3YGS C;  1DDF A;  1E41 A;  2N00 A;  1A1W A;  4M9X A;  2YU0 A;  1YGO A;  2VGQ A;  2GF5 A;  2P1H A;  2IB1 A;  4N1K A;  3T6P A;  4M9Z A;  2M5V A;  4D8O A;  1FAD A;  2NAQ A;  1NGR A;  1D2Z B;  1ICH A;  2N1F A;  2OF5 H;  2MN4 A;  4IZ5 E;  1A1Z A;  2F1S A;  4P4H A;  2N7Z A;  1D2Z A;  3LQR A;  4EWI A;  4N1J A;  2MPC A;  2MB9 A;  4F44 A;  4IZA B;  4A2W A;  4O9F A;  2DBH A;  2MS8 A;  2N83 A;  4E9M A;  1DGN A;  2LWE A;  2LS7 A;  3KAT A;  2A5Y B;  2NSN A;  4O9L A;  4P4H I;  4O7Q A;  1UCP A;  3MOP G;  3J63 A;  4ZBW A; 
#chains in the Genus database with same CATH topology
 2OF5 A;  1WH4 A;  3CRD A;  4M9S A;  4FH0 A;  4RHW A;  4QOB A;  4LWD A;  1N3K A;  2DBF A;  2L6A A;  2KM6 A;  3EZQ B;  2O71 A;  4NQK A;  1PN5 A;  4JUP A;  2YVI A;  2BBR A;  2NZ7 A;  4UZ0 A;  3CL3 A;  2BBZ A;  2DO9 A;  3J6J A;  4O6X A;  1E3Y A;  2B1W A;  1CY5 A;  2N97 A;  2LWD A;  4I16 A;  1C15 A;  2MJM A;  4RHW E;  2D96 A;  2L9M A;  2YQF A;  1CWW A;  4N1L A;  4DWN A;  2DBD A;  3MOP K;  1WMG A;  3YGS P;  2N80 A;  4F42 A;  2A9I A;  3EZQ A;  4IZ7 B;  2DBG A;  3LQQ A;  3QF2 A;  1Z6T A;  2MS7 A;  4A2Q A;  2HM2 Q;  2YGS A;  4JQW A;  1WXP A;  2G7R A;  2KN6 A;  3MOP A;  3YGS C;  1DDF A;  1E41 A;  2N00 A;  1A1W A;  4M9X A;  2YU0 A;  1YGO A;  2VGQ A;  2GF5 A;  2P1H A;  2IB1 A;  4N1K A;  3T6P A;  4M9Z A;  2M5V A;  4D8O A;  1FAD A;  2NAQ A;  2XV9 A;  1NGR A;  1D2Z B;  1ICH A;  2N1F A;  2OF5 H;  2MN4 A;  4IZ5 E;  1A1Z A;  2F1S A;  4P4H A;  2N7Z A;  1D2Z A;  3LQR A;  4EWI A;  4N1J A;  2MPC A;  2MB9 A;  4F44 A;  4IZA B;  4A2W A;  4O9F A;  2DBH A;  2MS8 A;  2N83 A;  4E9M A;  1DGN A;  2LWE A;  2LS7 A;  3KAT A;  2A5Y B;  2NSN A;  4O9L A;  4P4H I;  4O7Q A;  1UCP A;  3MOP G;  3J63 A;  4ZBW A; 
#chains in the Genus database with same CATH homology
 2OF5 A;  1WH4 A;  3CRD A;  4M9S A;  4FH0 A;  4RHW A;  4QOB A;  4LWD A;  1N3K A;  2DBF A;  2L6A A;  2KM6 A;  3EZQ B;  2O71 A;  4NQK A;  1PN5 A;  4JUP A;  2YVI A;  2BBR A;  2NZ7 A;  4UZ0 A;  3CL3 A;  2BBZ A;  2DO9 A;  3J6J A;  4O6X A;  1E3Y A;  2B1W A;  1CY5 A;  2N97 A;  2LWD A;  4I16 A;  1C15 A;  2MJM A;  4RHW E;  2D96 A;  2L9M A;  2YQF A;  1CWW A;  4N1L A;  4DWN A;  2DBD A;  3MOP K;  1WMG A;  3YGS P;  2N80 A;  4F42 A;  2A9I A;  3EZQ A;  4IZ7 B;  2DBG A;  3LQQ A;  3QF2 A;  1Z6T A;  2MS7 A;  4A2Q A;  2HM2 Q;  2YGS A;  4JQW A;  1WXP A;  2G7R A;  2KN6 A;  3MOP A;  3YGS C;  1DDF A;  1E41 A;  2N00 A;  1A1W A;  4M9X A;  2YU0 A;  1YGO A;  2VGQ A;  2GF5 A;  2P1H A;  2IB1 A;  4N1K A;  3T6P A;  4M9Z A;  2M5V A;  4D8O A;  1FAD A;  2NAQ A;  2XV9 A;  1NGR A;  1D2Z B;  1ICH A;  2N1F A;  2OF5 H;  2MN4 A;  4IZ5 E;  1A1Z A;  2F1S A;  4P4H A;  2N7Z A;  1D2Z A;  3LQR A;  4EWI A;  4N1J A;  2MPC A;  2MB9 A;  4F44 A;  4IZA B;  4A2W A;  4O9F A;  2DBH A;  2MS8 A;  2N83 A;  4E9M A;  1DGN A;  2LWE A;  2LS7 A;  3KAT A;  2A5Y B;  2NSN A;  4O9L A;  4P4H I;  4O7Q A;  1UCP A;  3MOP G;  3J63 A;  4ZBW A; 
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