The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
5
|
sequence length |
45
|
structure length |
45
|
Chain Sequence |
DYAKCVFPFIYGGKKYETCTKIGSMWMSWCSLSPNYDKDRAWKYC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Refined solution structure and ligand-binding properties of PDC-109 domain b. A collagen-binding type II domain.
pubmed doi rcsb |
| molecule tags |
Collagen-binding type ii domain
|
| source organism |
Bos taurus
|
| molecule keywords |
SEMINAL FLUID PROTEIN PDC-109
|
| total genus |
5
|
| structure length |
45
|
| sequence length |
45
|
| ec nomenclature | |
| pdb deposition date | 1991-10-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00040 | fn2 | Fibronectin type II domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Seminal Fluid Protein PDC-109 (Domain B) | Fibronectin, type II, collagen-binding |
#chains in the Genus database with same CATH superfamily 1E8B A; 1KS0 A; 1QO6 A; 1L6J A; 1CK7 A; 2V5O A; 1J7M A; 1E88 A; 3M7P A; 3MQL A; 2FN2 A; 1GXD A; 1CXW A; 1PDC A; 1EAK A; 1H8P A; #chains in the Genus database with same CATH topology 4Z2K A; 4OJO A; 1UR8 A; 3L25 A; 1CXW A; 4IBE A; 3WD3 A; 4Z2L A; 4NZ3 A; 1AIW A; 1E8B A; 1KS0 A; 1UR9 A; 1J7M A; 4GHA A; 2FN2 A; 3L29 A; 2Y2L A; 4MB4 A; 3M7P A; 5BPV A; 1E6P A; 4OJP A; 3WX7 A; 4NZ4 A; 4OJ6 A; 1W1T A; 2JCH A; 1H8P A; 4IBF A; 4IJF A; 3N3F A; 4MB3 A; 1YU3 A; 3L27 A; 4OJ5 A; 1ED7 A; 3WD0 A; 2Y2J A; 4IBG A; 2IOU A; 2Y2M A; 3HSH A; 1E6N A; 1H0G A; 1OGG A; 1YU2 A; 4IBC A; 4MB5 A; 4IBI A; 1E15 A; 2Y2H A; 4QNL A; 1EAK A; 2Y2I A; 2Y2G A; 3L26 A; 4OUI A; 3HON A; 1E88 A; 3MQL A; 4LG2 A; 4NYY A; 1YUE A; 4NY2 A; 1W1V A; 2JE5 A; 1CK7 A; 2XD5 A; 2Y2K A; 1QO6 A; 3KS4 A; 1GPF A; 1PDC A; 1O6I A; 4Z2G A; 2XD1 A; 4NZ5 A; 1W1Y A; 3L28 A; 3FKE A; 4IBJ A; 2RTS A; 4Z2I A; 1E6R A; 4IBD A; 3WD4 A; 2FFF B; 1GOI A; 1OGB A; 2Y2N A; 3WD1 A; 2Y2O A; 2BG1 A; 4NZ1 A; 1YU4 A; 3WD2 A; 1L6J A; 1YU0 A; 2V5O A; 3KS8 A; 4HMD A; 3L2A A; 4Z2J A; 1YU1 A; 4TX8 A; 4IBB A; 4GHL A; 2Y2P A; 4Z2H A; 4HMC A; 4NYU A; 2Y2Q A; 4IBK A; 4OJL A; 4GH9 A; 1E6Z A; 4IJE A; 2UWX A; 1H0I A; 1W1P A; 4HME A; 1GXD A; 2D49 A; #chains in the Genus database with same CATH homology 1E8B A; 1KS0 A; 1QO6 A; 1L6J A; 1CK7 A; 2V5O A; 1J7M A; 1E88 A; 3M7P A; 3MQL A; 2FN2 A; 1GXD A; 1CXW A; 1PDC A; 1EAK A; 1H8P A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
