1YU2A

Major tropism determinant m1 variant
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
377
structure length
377
Chain Sequence
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGSWHYTSNSGSRAAYWYSGPSNSPANIGARGVCDHLILE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Major Tropism Determinant (Mtd-M1)
publication title The C-type lectin fold as an evolutionary solution for massive sequence variation
pubmed doi rcsb
source organism Bordetella phage bmp-1
molecule tags Viral protein
total genus 103
structure length 377
sequence length 377
ec nomenclature
pdb deposition date 2005-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18454 Mtd_N Major tropism determinant N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.30 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 1yu2A01
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 1yu2A03
1YU4A 2Y3CA 1Y1IX 2IOUA 1Y4JA 2HIBX 1Y1JX 1YU2A 1YU0A 1YU1A 2AFYX 1YU3A 1Y1FX 2Q17A 2AIKX 2AIJX 2AIIX 1Y1HX 1Y1GX 1Y1EX 2HI8X 1Z70X 2AFTX
chains in the Genus database with same CATH superfamily
2XD5A 3L2AA 3N3FA 4HMEA 1QO6A 1Y1JX 1E6NA 1YU0A 3KS8A 3WD0A 2Y2OA 1CXWA 1E6RA 2Q17A 2Y2LA 3M7PA 1W1TA 1H0IA 4IBGA 2Y2KA 3KS4A 2Y2GA 3L28A 4IBIA 1E6ZA 5BPVA 4MB4A 3MQLA 1E8BA 1W1YA 1GPFA 2HI8X 4IBDA 2FFFB 1Y1IX 1UR9A 4HMDA 3WD2A 1YU3A 4OJPA 3L26A 1PDCA 4OJOA 1CK7A 4HMCA 4Z2IA 2AIKX 3FKEA 2AIJX 1GOIA 2JE5A 4NYUA 2Y2NA 3HONA 1E15A 1KS0A 4GHAA 1AIWA 4Z2HA 1ED7A 4IBCA 1Z70X 4NZ4A 4QNLA 2D49A 1OGBA 2RTSA 2Y3CA 2Y2IA 1UR8A 2JCHA 2HIBX 1YU2A 3WX7A 1GXDA 2AFYX 4GH9A 4Z2KA 2Y2JA 4NZ1A 1W1PA 3L29A 1W1VA 4OJ5A 4IBKA 4NYYA 3HSHA 3L25A 2AIIX 4IJEA 4NZ3A 1E88A 1Y1HX 2XD1A 2Y2HA 2Y2PA 4OJLA 4Z2LA 1E6PA 1Y1GX 4MB3A 4OUIA 1L6JA 4IJFA 1YU4A 1EAKA 1H8PA 2IOUA 4IBEA 1Y4JA 4TX8A 2Y2MA 1YU1A 2FN2A 1O6IA 1Y1FX 1YUEA 4MB5A 3L27A 4IBBA 3WD4A 1H0GA 4LG2A 4IBFA 4GHLA 4OJ6A 4IBJA 4NZ5A 1OGGA 4NY2A 4Z2JA 2Y2QA 3WD1A 3WD3A 4Z2GA 1Y1EX 2BG1A 2UWXA 2V5OA 1J7MA 2AFTX
chains in the Genus database with same CATH topology
2XD5A 3L2AA 3N3FA 1Y1JX 1YU0A 3KS8A 2Y2OA 2Q17A 2Y2LA 4IBGA 2Y2KA 3KS4A 2Y2GA 3L28A 4IBIA 5BPVA 2HI8X 4IBDA 2FFFB 1Y1IX 1YU3A 4OJPA 3L26A 4OJOA 2AIKX 3FKEA 2AIJX 2JE5A 4NYUA 2Y2NA 3HONA 4GHAA 4IBCA 1Z70X 4QNLA 4NZ4A 2Y3CA 2Y2IA 2JCHA 2HIBX 1YU2A 3WX7A 2AFYX 4GH9A 2Y2JA 4NZ1A 3L29A 4OJ5A 4IBKA 4NYYA 3HSHA 3L25A 2AIIX 4IJEA 4NZ3A 1Y1HX 2XD1A 2Y2HA 2Y2PA 4OJLA 1Y1GX 4OUIA 4IJFA 1YU4A 4IBEA 2IOUA 1Y4JA 2Y2MA 1YU1A 1Y1FX 1YUEA 3L27A 4IBBA 4LG2A 4IBFA 4GHLA 4OJ6A 4IBJA 4NZ5A 4NY2A 2Y2QA 1Y1EX 2BG1A 2UWXA 2AFTX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YU4 A;  2Y3C A;  1Y1I X;  2IOU A;  1Y4J A;  2HIB X;  1Y1J X;  1YU2 A;  1YU0 A;  1YU1 A;  2AFY X;  1YU3 A;  1Y1F X;  2Q17 A;  2AIK X;  2AIJ X;  2AII X;  1Y1H X;  1Y1G X;  1Y1E X;  2HI8 X;  1Z70 X;  2AFT X; 
#chains in the Genus database with same CATH topology
 2XD5 A;  3L2A A;  3N3F A;  4HME A;  1QO6 A;  1Y1J X;  1E6N A;  1YU0 A;  3KS8 A;  3WD0 A;  2Y2O A;  1CXW A;  1E6R A;  2Q17 A;  2Y2L A;  3M7P A;  1W1T A;  1H0I A;  4IBG A;  2Y2K A;  3KS4 A;  2Y2G A;  3L28 A;  4IBI A;  1E6Z A;  5BPV A;  4MB4 A;  3MQL A;  1E8B A;  1W1Y A;  1GPF A;  2HI8 X;  4IBD A;  2FFF B;  1Y1I X;  1UR9 A;  4HMD A;  3WD2 A;  1YU3 A;  4OJP A;  3L26 A;  1PDC A;  4OJO A;  1CK7 A;  4HMC A;  4Z2I A;  2AIK X;  3FKE A;  2AIJ X;  1GOI A;  2JE5 A;  4NYU A;  2Y2N A;  3HON A;  1E15 A;  1KS0 A;  4GHA A;  1AIW A;  4Z2H A;  1ED7 A;  4IBC A;  1Z70 X;  4NZ4 A;  4QNL A;  2D49 A;  1OGB A;  2RTS A;  2Y3C A;  2Y2I A;  1UR8 A;  2JCH A;  2HIB X;  1YU2 A;  3WX7 A;  1GXD A;  2AFY X;  4GH9 A;  4Z2K A;  2Y2J A;  4NZ1 A;  1W1P A;  3L29 A;  1W1V A;  4OJ5 A;  4IBK A;  4NYY A;  3HSH A;  3L25 A;  2AII X;  4IJE A;  4NZ3 A;  1E88 A;  1Y1H X;  2XD1 A;  2Y2H A;  2Y2P A;  4OJL A;  4Z2L A;  1E6P A;  1Y1G X;  4MB3 A;  4OUI A;  1L6J A;  4IJF A;  1YU4 A;  1EAK A;  1H8P A;  2IOU A;  4IBE A;  1Y4J A;  4TX8 A;  2Y2M A;  1YU1 A;  2FN2 A;  1O6I A;  1Y1F X;  1YUE A;  4MB5 A;  3L27 A;  4IBB A;  3WD4 A;  1H0G A;  4LG2 A;  4IBF A;  4GHL A;  4OJ6 A;  4IBJ A;  4NZ5 A;  1OGG A;  4NY2 A;  4Z2J A;  2Y2Q A;  3WD1 A;  3WD3 A;  4Z2G A;  1Y1E X;  2BG1 A;  2UWX A;  2V5O A;  1J7M A;  2AFT X; 
#chains in the Genus database with same CATH homology
 2XD5 A;  3L2A A;  3N3F A;  1Y1J X;  1YU0 A;  3KS8 A;  2Y2O A;  2Q17 A;  2Y2L A;  4IBG A;  2Y2K A;  3KS4 A;  2Y2G A;  3L28 A;  4IBI A;  5BPV A;  2HI8 X;  4IBD A;  2FFF B;  1Y1I X;  1YU3 A;  4OJP A;  3L26 A;  4OJO A;  2AIK X;  3FKE A;  2AIJ X;  2JE5 A;  4NYU A;  2Y2N A;  3HON A;  4GHA A;  4IBC A;  1Z70 X;  4QNL A;  4NZ4 A;  2Y3C A;  2Y2I A;  2JCH A;  2HIB X;  1YU2 A;  3WX7 A;  2AFY X;  4GH9 A;  2Y2J A;  4NZ1 A;  3L29 A;  4OJ5 A;  4IBK A;  4NYY A;  3HSH A;  3L25 A;  2AII X;  4IJE A;  4NZ3 A;  1Y1H X;  2XD1 A;  2Y2H A;  2Y2P A;  4OJL A;  1Y1G X;  4OUI A;  4IJF A;  1YU4 A;  4IBE A;  2IOU A;  1Y4J A;  2Y2M A;  1YU1 A;  1Y1F X;  1YUE A;  3L27 A;  4IBB A;  4LG2 A;  4IBF A;  4GHL A;  4OJ6 A;  4IBJ A;  4NZ5 A;  4NY2 A;  2Y2Q A;  1Y1E X;  2BG1 A;  2UWX A;  2AFT X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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