The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
113
|
sequence length |
407
|
structure length |
370
|
Chain Sequence |
ALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSVTPGRVREALDEGKICIVGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSNDPGTLIAGSMEDIPVEEAVLTGVATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDLDAAARALHEQFQLG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Mechanism of concerted inhibition of {alpha}2{beta}2-type heterooligomeric aspartate kinase from Corynebacterium glutamicum
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Corynebacterium glutamicum
|
| molecule keywords |
Aspartokinase
|
| total genus |
113
|
| structure length |
370
|
| sequence length |
407
|
| chains with identical sequence |
C, E, G, I, K, M, O
|
| ec nomenclature |
ec
2.7.2.4: Aspartate kinase. |
| pdb deposition date | 2009-11-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00696 | AA_kinase | Amino acid kinase family |
| A | PF01842 | ACT | ACT domain |
| A | PF13840 | ACT_7 | ACT domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | VC0802-like | VC0802-like | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like |
#chains in the Genus database with same CATH superfamily 2J4J A; 2OGX A; 4A7X A; 4KZT A; 3TVI A; 2BRI A; 3D2P A; 1B7B A; 3KZF A; 3NWY A; 2J5V A; 3EK6 A; 1ZHV A; 3D41 A; 3WWM A; 2AP9 A; 3QVH A; 2JI5 A; 2V4Y A; 2HMF A; 3K56 A; 2J4K A; 3ZZH A; 3LL5 A; 3D2M A; 3S6G A; 2BND A; 3QUO A; 3LKK A; 4AXS A; 2BMU A; 2R98 A; 3L76 A; 4NDP B; 2J0X A; 4JZ9 A; 3ZZI A; 2J0W A; 3K4O A; 2W21 A; 3C1M A; 2J5T A; 4JZ7 A; 3T7B A; 2V5H A; 3WWN A; 1OHA A; 3QUN A; 1OH9 A; 2RD5 A; 2BNE A; 3L86 A; 3LL9 A; 2CDQ A; 3C1N A; 2IJ9 A; 3EK5 A; 1YBD A; 4F6T B; 1ZVP A; 2AKO A; 4A7W A; 4NDO B; 3D40 A; 3AB2 A; 3QVF A; 2A1F A; 2BNF A; 4NDQ B; 4NDP A; 3S6H A; 3K52 A; 3U6U A; 3AAW A; 2E9Y A; 4Q1T A; 4AB7 A; 2BTY A; 1Z9D A; 2WXB A; 2WE5 A; 2J4L A; 4JZ8 A; 2BUF A; 2X2W A; 4F6T A; 3ZZF A; 4USJ A; 4NDO A; 1OHB A; 2F06 A; 4NDR B; 4I49 A; 3QUR A; 2BRX A; 3S6K A; 1GSJ A; 2VA1 A; 3B8G A; 3K4Y A; 3C20 A; 2JJ4 A; 2JJX A; 4NDR A; 1E19 A; 4OLC A; 4NDQ A; 3AB4 A; 3ZZG A; 2WE4 A; 1GS5 A; 2R8V A; 2OGX B; #chains in the Genus database with same CATH topology 2J4J A; 2OGX A; 4A7X A; 4KZT A; 3TVI A; 2BRI A; 3D2P A; 1B7B A; 3KZF A; 3NWY A; 2J5V A; 3EK6 A; 3TM4 A; 1ZHV A; 3K0B A; 3D41 A; 3WWM A; 2AP9 A; 3QVH A; 2JI5 A; 2V4Y A; 2HMF A; 3LDG A; 3K56 A; 2J4K A; 3ZZH A; 3LL5 A; 3D2M A; 3S6G A; 2BND A; 3QUO A; 3LKK A; 3TMA A; 4AXS A; 2BMU A; 2R98 A; 3L76 A; 4NDP B; 2J0X A; 4JZ9 A; 3ZZI A; 2J0W A; 3K4O A; 2W21 A; 3C1M A; 2C5S A; 4KR6 A; 2J5T A; 4JZ7 A; 3T7B A; 2V5H A; 3WWN A; 1OHA A; 3QUN A; 1OH9 A; 2RD5 A; 2BNE A; 3L86 A; 3LL9 A; 2CDQ A; 3C1N A; 2IJ9 A; 3EK5 A; 1YBD A; 4F6T B; 3TM5 A; 1ZVP A; 2AKO A; 4A7W A; 4NDO B; 3D40 A; 4KR7 A; 3LDU A; 3AB2 A; 3QVF A; 2A1F A; 2BNF A; 3V8V A; 4NDQ B; 4NDP A; 3S6H A; 3K52 A; 3TLJ A; 3U6U A; 3AAW A; 2E9Y A; 4Q1T A; 4AB7 A; 2BTY A; 1Z9D A; 2WXB A; 4KR9 A; 2WE5 A; 2J4L A; 4JZ8 A; 2BUF A; 2X2W A; 4F6T A; 3ZZF A; 4USJ A; 4NDO A; 1OHB A; 2F06 A; 4NDR B; 4I49 A; 3QUR A; 2BRX A; 3S6K A; 1GSJ A; 2VA1 A; 3B8G A; 3K4Y A; 3C20 A; 2JJ4 A; 2JJX A; 4NDR A; 1E19 A; 4OLC A; 4NDQ A; 3AB4 A; 3ZZG A; 2WE4 A; 1GS5 A; 2R8V A; 3V97 A; 2OGX B; #chains in the Genus database with same CATH homology 2J4J A; 2OGX A; 4A7X A; 4KZT A; 3TVI A; 2BRI A; 3D2P A; 1B7B A; 3KZF A; 3NWY A; 2J5V A; 3EK6 A; 3TM4 A; 1ZHV A; 3K0B A; 3D41 A; 3WWM A; 2AP9 A; 3QVH A; 2JI5 A; 2V4Y A; 2HMF A; 3LDG A; 3K56 A; 2J4K A; 3ZZH A; 3LL5 A; 3D2M A; 3S6G A; 2BND A; 3QUO A; 3LKK A; 3TMA A; 4AXS A; 2BMU A; 2R98 A; 3L76 A; 4NDP B; 2J0X A; 4JZ9 A; 3ZZI A; 2J0W A; 3K4O A; 2W21 A; 3C1M A; 2C5S A; 4KR6 A; 2J5T A; 4JZ7 A; 3T7B A; 2V5H A; 3WWN A; 1OHA A; 3QUN A; 1OH9 A; 2RD5 A; 2BNE A; 3L86 A; 3LL9 A; 2CDQ A; 3C1N A; 2IJ9 A; 3EK5 A; 1YBD A; 4F6T B; 3TM5 A; 1ZVP A; 2AKO A; 4A7W A; 4NDO B; 3D40 A; 4KR7 A; 3LDU A; 3AB2 A; 3QVF A; 2A1F A; 2BNF A; 3V8V A; 4NDQ B; 4NDP A; 3S6H A; 3K52 A; 3TLJ A; 3U6U A; 3AAW A; 2E9Y A; 4Q1T A; 4AB7 A; 2BTY A; 1Z9D A; 2WXB A; 4KR9 A; 2WE5 A; 2J4L A; 4JZ8 A; 2BUF A; 2X2W A; 4F6T A; 3ZZF A; 4USJ A; 4NDO A; 1OHB A; 2F06 A; 4NDR B; 4I49 A; 3QUR A; 2BRX A; 3S6K A; 1GSJ A; 2VA1 A; 3B8G A; 3K4Y A; 3C20 A; 2JJ4 A; 2JJX A; 4NDR A; 1E19 A; 4OLC A; 4NDQ A; 3AB4 A; 3ZZG A; 2WE4 A; 1GS5 A; 2R8V A; 3V97 A; 2OGX B;
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