3N3FA

Crystal structure of the human collagen xv trimerization domain: a potent trimerizing unit common to multiplexin collagens
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
54
structure length
54
Chain Sequence
NLVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
source organism Homo sapiens
publication title Crystal structure of the human collagen XV trimerization domain: A potent trimerizing unit common to multiplexin collagens.
pubmed doi rcsb
molecule keywords Collagen alpha-1(XV) chain
total genus 9
structure length 54
sequence length 54
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-05-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.50 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 3n3fA01
3N3FA 3HSHA 3HONA
chains in the Genus database with same CATH superfamily
2BG1A 1ED7A 4GHAA 4IBDA 4NZ1A 1YU0A 4Z2IA 1H0IA 3L29A 2Y2OA 4GH9A 1QO6A 3KS8A 4NYUA 4MB5A 1EAKA 4IBIA 1E6NA 4IJEA 3HSHA 4OJLA 4Z2LA 4IJFA 4NYYA 1W1PA 1H8PA 4NZ3A 3WX7A 4IBBA 1O6IA 4IBEA 1PDCA 3WD4A 1YU1A 2RTSA 1E6RA 4MB3A 1GPFA 3WD3A 1KS0A 4IBCA 4TX8A 4OJPA 4OJ5A 1E88A 4Z2JA 2Y2PA 2UWXA 3WD1A 3N3FA 1YU4A 5BPVA 3L26A 1GOIA 1YU3A 1L6JA 1UR9A 4OJ6A 3L28A 2Y2QA 4QNLA 3L27A 1W1TA 1W1VA 4OJOA 3KS4A 1OGBA 3WD0A 2Y2LA 3WD2A 2Y2IA 2Y2HA 2Y2JA 2FFFB 1YU2A 2FN2A 1J7MA 3L25A 2D49A 1CK7A 4OUIA 3L2AA 4NY2A 2Y2MA 4IBJA 4Z2KA 2Y2GA 4IBFA 1E8BA 1GXDA 2XD1A 4MB4A 2Y2NA 1W1YA 2XD5A 1UR8A 1E6PA 4IBGA 3FKEA 4NZ4A 1CXWA 1E6ZA 2V5OA 4HMCA 4Z2HA 4Z2GA 1AIWA 3M7PA 1H0GA 4LG2A 4IBKA 3MQLA 1YUEA 2IOUA 2JCHA 4HMDA 1OGGA 4GHLA 4HMEA 1E15A 4NZ5A 2JE5A 2Y2KA 3HONA
chains in the Genus database with same CATH topology
2Y2GA 4IBBA 4IBEA 4IBFA 4NZ3A 2XD1A 4OJOA 3KS4A 2Y2NA 3WX7A 2XD5A 2BG1A 1YU1A 4GHAA 2Y2LA 4IBDA 2Y2IA 4IBGA 4NZ1A 3FKEA 1YU0A 2Y2HA 2Y2JA 4IBCA 4NZ4A 2FFFB 4OJ5A 4OJPA 3L29A 1YU2A 2Y2OA 3L25A 4GH9A 2Y2PA 3KS8A 4NYUA 2UWXA 4QNLA 4LG2A 4IBKA 1YUEA 2IOUA 2JCHA 1YU4A 3N3FA 4IBIA 3HSHA 4IJEA 5BPVA 3L26A 1YU3A 4OJLA 4GHLA 4IJFA 4NYYA 4OUIA 3L2AA 4OJ6A 4NY2A 3L28A 2Y2MA 2Y2QA 4IBJA 4NZ5A 3L27A 2JE5A 2Y2KA 3HONA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N3F A;  3HSH A;  3HON A; 
#chains in the Genus database with same CATH topology
 2BG1 A;  1ED7 A;  4GHA A;  4IBD A;  4NZ1 A;  1YU0 A;  4Z2I A;  1H0I A;  3L29 A;  2Y2O A;  4GH9 A;  1QO6 A;  3KS8 A;  4NYU A;  4MB5 A;  1EAK A;  4IBI A;  1E6N A;  4IJE A;  3HSH A;  4OJL A;  4Z2L A;  4IJF A;  4NYY A;  1W1P A;  1H8P A;  4NZ3 A;  3WX7 A;  4IBB A;  1O6I A;  4IBE A;  1PDC A;  3WD4 A;  1YU1 A;  2RTS A;  1E6R A;  4MB3 A;  1GPF A;  3WD3 A;  1KS0 A;  4IBC A;  4TX8 A;  4OJP A;  4OJ5 A;  1E88 A;  4Z2J A;  2Y2P A;  2UWX A;  3WD1 A;  3N3F A;  1YU4 A;  5BPV A;  3L26 A;  1GOI A;  1YU3 A;  1L6J A;  1UR9 A;  4OJ6 A;  3L28 A;  2Y2Q A;  4QNL A;  3L27 A;  1W1T A;  1W1V A;  4OJO A;  3KS4 A;  1OGB A;  3WD0 A;  2Y2L A;  3WD2 A;  2Y2I A;  2Y2H A;  2Y2J A;  2FFF B;  1YU2 A;  2FN2 A;  1J7M A;  3L25 A;  2D49 A;  1CK7 A;  4OUI A;  3L2A A;  4NY2 A;  2Y2M A;  4IBJ A;  4Z2K A;  2Y2G A;  4IBF A;  1E8B A;  1GXD A;  2XD1 A;  4MB4 A;  2Y2N A;  1W1Y A;  2XD5 A;  1UR8 A;  1E6P A;  4IBG A;  3FKE A;  4NZ4 A;  1CXW A;  1E6Z A;  2V5O A;  4HMC A;  4Z2H A;  4Z2G A;  1AIW A;  3M7P A;  1H0G A;  4LG2 A;  4IBK A;  3MQL A;  1YUE A;  2IOU A;  2JCH A;  4HMD A;  1OGG A;  4GHL A;  4HME A;  1E15 A;  4NZ5 A;  2JE5 A;  2Y2K A;  3HON A; 
#chains in the Genus database with same CATH homology
 2Y2G A;  4IBB A;  4IBE A;  4IBF A;  4NZ3 A;  2XD1 A;  4OJO A;  3KS4 A;  2Y2N A;  3WX7 A;  2XD5 A;  2BG1 A;  1YU1 A;  4GHA A;  2Y2L A;  4IBD A;  2Y2I A;  4IBG A;  4NZ1 A;  3FKE A;  1YU0 A;  2Y2H A;  2Y2J A;  4IBC A;  4NZ4 A;  2FFF B;  4OJ5 A;  4OJP A;  3L29 A;  1YU2 A;  2Y2O A;  3L25 A;  4GH9 A;  2Y2P A;  3KS8 A;  4NYU A;  2UWX A;  4QNL A;  4LG2 A;  4IBK A;  1YUE A;  2IOU A;  2JCH A;  1YU4 A;  3N3F A;  4IBI A;  3HSH A;  4IJE A;  5BPV A;  3L26 A;  1YU3 A;  4OJL A;  4GHL A;  4IJF A;  4NYY A;  4OUI A;  3L2A A;  4OJ6 A;  4NY2 A;  3L28 A;  2Y2M A;  2Y2Q A;  4IBJ A;  4NZ5 A;  3L27 A;  2JE5 A;  2Y2K A;  3HON A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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