3N3FA

Crystal structure of the human collagen xv trimerization domain: a potent trimerizing unit common to multiplexin collagens
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
54
structure length
54
Chain Sequence
NLVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
source organism Homo sapiens
publication title Crystal structure of the human collagen XV trimerization domain: A potent trimerizing unit common to multiplexin collagens.
pubmed doi rcsb
molecule keywords Collagen alpha-1(XV) chain
total genus 9
structure length 54
sequence length 54
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-05-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.50 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 3n3fA01
3N3FA 3HONA 3HSHA
chains in the Genus database with same CATH superfamily
4NY2A 2BG1A 4IBGA 4NZ3A 2Y2LA 2Y2OA 2Y2IA 4NYUA 3N3FA 1CK7A 1H0IA 4IBCA 1YU4A 1YU1A 4IBEA 1QO6A 3L26A 1H8PA 2XD5A 1GOIA 1W1TA 2Y2HA 4Z2HA 3WD3A 2JCHA 4Z2KA 4OJLA 5BPVA 4NZ5A 4GHLA 4OJ6A 1E6ZA 1E15A 4Z2LA 1YUEA 4MB5A 2Y2KA 4GH9A 4Z2IA 4HMDA 4HMCA 1EAKA 2FFFB 2Y2GA 2RTSA 1E88A 1CXWA 3MQLA 3KS4A 4NYYA 2XD1A 3HONA 2JE5A 2Y2NA 3WX7A 1ED7A 4Z2JA 1J7MA 2FN2A 3HSHA 1W1VA 4HMEA 1H0GA 1GPFA 1YU2A 4OJOA 3WD4A 1UR9A 1L6JA 2UWXA 1YU3A 3FKEA 4OUIA 1E6PA 4IBJA 3WD1A 4IBFA 4TX8A 4OJ5A 4IJEA 4MB4A 2IOUA 1E8BA 4OJPA 4QNLA 3L28A 3M7PA 2Y2MA 3KS8A 2Y2JA 1E6RA 1KS0A 3L27A 4IBKA 4IBIA 1GXDA 1W1PA 1W1YA 2V5OA 2D49A 4IBDA 1PDCA 2Y2QA 4GHAA 1O6IA 1OGGA 1OGBA 4MB3A 3L25A 1E6NA 3WD0A 4LG2A 2Y2PA 1YU0A 4NZ4A 4NZ1A 4IJFA 4IBBA 3L2AA 4Z2GA 1AIWA 3WD2A 3L29A 1UR8A
chains in the Genus database with same CATH topology
4NY2A 2BG1A 2UWXA 1YU3A 4IBGA 4NZ3A 3FKEA 2Y2LA 1YUEA 4IBDA 4OUIA 2Y2OA 2Y2IA 2Y2QA 4GHAA 2Y2KA 4GH9A 3N3FA 4IBJA 4IBFA 4NYUA 4OJ5A 4IJEA 2FFFB 2Y2GA 3L25A 2IOUA 4IBCA 1YU4A 1YU1A 4IBEA 4LG2A 2Y2PA 1YU0A 4OJPA 4NZ4A 4NZ1A 3L26A 4QNLA 4IJFA 2XD5A 3L28A 4IBBA 3KS4A 3L2AA 4NYYA 2Y2MA 4OJOA 2Y2JA 2Y2HA 3KS8A 2XD1A 3HONA 2JE5A 2JCHA 2Y2NA 3L27A 4IBKA 4IBIA 3L29A 4OJLA 3WX7A 5BPVA 4NZ5A 4GHLA 3HSHA 4OJ6A 1YU2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N3F A;  3HON A;  3HSH A; 
#chains in the Genus database with same CATH topology
 4NY2 A;  2BG1 A;  4IBG A;  4NZ3 A;  2Y2L A;  2Y2O A;  2Y2I A;  4NYU A;  3N3F A;  1CK7 A;  1H0I A;  4IBC A;  1YU4 A;  1YU1 A;  4IBE A;  1QO6 A;  3L26 A;  1H8P A;  2XD5 A;  1GOI A;  1W1T A;  2Y2H A;  4Z2H A;  3WD3 A;  2JCH A;  4Z2K A;  4OJL A;  5BPV A;  4NZ5 A;  4GHL A;  4OJ6 A;  1E6Z A;  1E15 A;  4Z2L A;  1YUE A;  4MB5 A;  2Y2K A;  4GH9 A;  4Z2I A;  4HMD A;  4HMC A;  1EAK A;  2FFF B;  2Y2G A;  2RTS A;  1E88 A;  1CXW A;  3MQL A;  3KS4 A;  4NYY A;  2XD1 A;  3HON A;  2JE5 A;  2Y2N A;  3WX7 A;  1ED7 A;  4Z2J A;  1J7M A;  2FN2 A;  3HSH A;  1W1V A;  4HME A;  1H0G A;  1GPF A;  1YU2 A;  4OJO A;  3WD4 A;  1UR9 A;  1L6J A;  2UWX A;  1YU3 A;  3FKE A;  4OUI A;  1E6P A;  4IBJ A;  3WD1 A;  4IBF A;  4TX8 A;  4OJ5 A;  4IJE A;  4MB4 A;  2IOU A;  1E8B A;  4OJP A;  4QNL A;  3L28 A;  3M7P A;  2Y2M A;  3KS8 A;  2Y2J A;  1E6R A;  1KS0 A;  3L27 A;  4IBK A;  4IBI A;  1GXD A;  1W1P A;  1W1Y A;  2V5O A;  2D49 A;  4IBD A;  1PDC A;  2Y2Q A;  4GHA A;  1O6I A;  1OGG A;  1OGB A;  4MB3 A;  3L25 A;  1E6N A;  3WD0 A;  4LG2 A;  2Y2P A;  1YU0 A;  4NZ4 A;  4NZ1 A;  4IJF A;  4IBB A;  3L2A A;  4Z2G A;  1AIW A;  3WD2 A;  3L29 A;  1UR8 A; 
#chains in the Genus database with same CATH homology
 4NY2 A;  2BG1 A;  2UWX A;  1YU3 A;  4IBG A;  4NZ3 A;  3FKE A;  2Y2L A;  1YUE A;  4IBD A;  4OUI A;  2Y2O A;  2Y2I A;  2Y2Q A;  4GHA A;  2Y2K A;  4GH9 A;  3N3F A;  4IBJ A;  4IBF A;  4NYU A;  4OJ5 A;  4IJE A;  2FFF B;  2Y2G A;  3L25 A;  2IOU A;  4IBC A;  1YU4 A;  1YU1 A;  4IBE A;  4LG2 A;  2Y2P A;  1YU0 A;  4OJP A;  4NZ4 A;  4NZ1 A;  3L26 A;  4QNL A;  4IJF A;  2XD5 A;  3L28 A;  4IBB A;  3KS4 A;  3L2A A;  4NYY A;  2Y2M A;  4OJO A;  2Y2J A;  2Y2H A;  3KS8 A;  2XD1 A;  3HON A;  2JE5 A;  2JCH A;  2Y2N A;  3L27 A;  4IBK A;  4IBI A;  3L29 A;  4OJL A;  3WX7 A;  5BPV A;  4NZ5 A;  4GHL A;  3HSH A;  4OJ6 A;  1YU2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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