1FLCA

X-ray structure of the haemagglutinin-esterase-fusion glycoprotein of influenza c virus
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
427
structure length
427
Chain Sequence
EKIKICLQKQVNSSFSLHNGFGGNLYATEEKRMFELVKPKAGASVLNQSTWIGFGDSRTDKSNSAFPRSADVSAKTADKFRFLSGGSLMLSMFGPPGKVDYLYQGCGKHKVFYEGVNWSPHAAINCYRKNWTDIKLNFQKNIYELASQSHCMSLVNALDKTIPLQVTAGTAGNCNNSFLKNPALYTQEVKPSENKCGKENLAFFTLPTQFGTYECKLHLVASCYFIYDSKEVYNKRGCDNYFQVIYDSFGKVVGGLDNRVSPYTGNSGDTPTMQCDMLQLKPGRYSVRSSPRFLLMPERSYCFDMKEKGPVTAVQSIWGKGRESDYAVDQACLSTPGCMLIQKQKPYIGEADDHHGDQEMRELLSGLDYEARCISQSGWVNETSPFTEKYLLPPKFGRCPLAAKEESIPKIPDGLLIPTSGTDTTVT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords HAEMAGGLUTININ-ESTERASE-FUSION GLYCOPROTEIN
publication title Structure of the haemagglutinin-esterase-fusion glycoprotein of influenza C virus.
pubmed doi rcsb
source organism Influenza c virus (c/johannesburg/1/66)
total genus 103
structure length 427
sequence length 427
chains with identical sequence C, E
ec nomenclature ec 3.1.1.53: Sialate O-acetylesterase.
pdb deposition date 1999-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02710 Hema_HEFG Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein
A PF03996 Hema_esterase Hemagglutinin esterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.20 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1flcA01
5E62A 1FLCA 5E64A 5E65A 5E66A 5E5WA
chains in the Genus database with same CATH superfamily
3FSBA 2ZQUA 3OOBA 2DMVA 3M85A 1JMQA 3MCBB 1O6WA 4U85A 3MCBA 1EG3A 3KADA 2RE3A 5U47A 2YSBA 2EZ5W 2ZAJA 2XP8A 3L4HA 2ZQSA 1PINA 2ZR5A 4A0TA 5E66A 2XPAA 1I5HW 5E62A 1FLCA 2JXWA 2BA1A 3ODKA 2Y8NB 1NMVA 5E65A 2JX8A 2ZR6A 1F8AB 3FS8A 3LE4A 4A0UA 3KAGA 2KXQA 2LAJA 3TCZA 1TR8A 4E5RA 1K9RA 3TC5A 2XP6A 3CNGA 2YSGA 3KAIA 1TK7A 3KAHA 4QIBA 3FSCA 1WMVA 2M8JA 2YSFA 2YSHA 5AHTA 3LKXA 2QRVA 2WAEA 3PQHA 3KABA 2WADA 2MDIA 1EG4A 4U86A 2DK7A 1RP5A 2XP9A 1WR7A 2XP7A 2ZQTA 5E5WA 2DK1A 3NTPA 2XP5A 2DJYA 1ZCNA 2E45A 2OWOA 2Q5AA 2F21A 3LKXB 2XP3A 2XPBA 3M7NA 2XP4A 1K9QA 2JMFA 5CQ2A 3KAFA 4REXA 3MQHA 4GLXA 3MQGA 2YSIA 3KCEA 2ZR4A 2JV4A 3TDBA 3WH0A 2L4JA 2ZQVA 5E64A 2M8IA 1YW5A 2YAJB 4U84A 2DWVA 2M3OW 2ITKA
chains in the Genus database with same CATH topology
3FSBA 2ZQUA 3OOBA 2DMVA 3M85A 1JMQA 3MCBB 1O6WA 4U85A 3MCBA 1EG3A 3KADA 2RE3A 5U47A 2YSBA 2EZ5W 2ZAJA 2XP8A 3L4HA 2ZQSA 1PINA 2ZR5A 4A0TA 5E66A 2XPAA 1I5HW 5E62A 1FLCA 2JXWA 2BA1A 3ODKA 2Y8NB 1NMVA 5E65A 2JX8A 2ZR6A 1F8AB 3FS8A 3LE4A 4A0UA 3KAGA 2KXQA 2LAJA 3TCZA 1TR8A 4E5RA 1K9RA 3TC5A 2XP6A 3CNGA 2YSGA 3KAIA 1TK7A 3KAHA 4QIBA 3FSCA 1WMVA 2M8JA 2YSFA 2YSHA 5AHTA 3LKXA 2QRVA 2WAEA 3PQHA 3KABA 2WADA 2MDIA 1EG4A 4U86A 2DK7A 1RP5A 2XP9A 1WR7A 2XP7A 2ZQTA 5E5WA 2DK1A 3NTPA 2XP5A 2DJYA 1ZCNA 2E45A 2OWOA 2Q5AA 2F21A 3LKXB 2XP3A 2XPBA 3M7NA 2XP4A 1K9QA 2JMFA 5CQ2A 3KAFA 4REXA 3MQHA 4GLXA 3MQGA 2YSIA 3KCEA 2ZR4A 2JV4A 3TDBA 3WH0A 2L4JA 2ZQVA 5E64A 2M8IA 1YW5A 2YAJB 4U84A 2DWVA 2M3OW 2ITKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E62 A;  1FLC A;  5E64 A;  5E65 A;  5E66 A;  5E5W A; 
#chains in the Genus database with same CATH topology
 3FSB A;  2ZQU A;  3OOB A;  2DMV A;  3M85 A;  1JMQ A;  3MCB B;  1O6W A;  4U85 A;  3MCB A;  1EG3 A;  3KAD A;  2RE3 A;  5U47 A;  2YSB A;  2EZ5 W;  2ZAJ A;  2XP8 A;  3L4H A;  2ZQS A;  1PIN A;  2ZR5 A;  4A0T A;  5E66 A;  2XPA A;  1I5H W;  5E62 A;  1FLC A;  2JXW A;  2BA1 A;  3ODK A;  2Y8N B;  1NMV A;  5E65 A;  2JX8 A;  2ZR6 A;  1F8A B;  3FS8 A;  3LE4 A;  4A0U A;  3KAG A;  2KXQ A;  2LAJ A;  3TCZ A;  1TR8 A;  4E5R A;  1K9R A;  3TC5 A;  2XP6 A;  3CNG A;  2YSG A;  3KAI A;  1TK7 A;  3KAH A;  4QIB A;  3FSC A;  1WMV A;  2M8J A;  2YSF A;  2YSH A;  5AHT A;  3LKX A;  2QRV A;  2WAE A;  3PQH A;  3KAB A;  2WAD A;  2MDI A;  1EG4 A;  4U86 A;  2DK7 A;  1RP5 A;  2XP9 A;  1WR7 A;  2XP7 A;  2ZQT A;  5E5W A;  2DK1 A;  3NTP A;  2XP5 A;  2DJY A;  1ZCN A;  2E45 A;  2OWO A;  2Q5A A;  2F21 A;  3LKX B;  2XP3 A;  2XPB A;  3M7N A;  2XP4 A;  1K9Q A;  2JMF A;  5CQ2 A;  3KAF A;  4REX A;  3MQH A;  4GLX A;  3MQG A;  2YSI A;  3KCE A;  2ZR4 A;  2JV4 A;  3TDB A;  3WH0 A;  2L4J A;  2ZQV A;  5E64 A;  2M8I A;  1YW5 A;  2YAJ B;  4U84 A;  2DWV A;  2M3O W;  2ITK A; 
#chains in the Genus database with same CATH homology
 3FSB A;  2ZQU A;  3OOB A;  2DMV A;  3M85 A;  1JMQ A;  3MCB B;  1O6W A;  4U85 A;  3MCB A;  1EG3 A;  3KAD A;  2RE3 A;  5U47 A;  2YSB A;  2EZ5 W;  2ZAJ A;  2XP8 A;  3L4H A;  2ZQS A;  1PIN A;  2ZR5 A;  4A0T A;  5E66 A;  2XPA A;  1I5H W;  5E62 A;  1FLC A;  2JXW A;  2BA1 A;  3ODK A;  2Y8N B;  1NMV A;  5E65 A;  2JX8 A;  2ZR6 A;  1F8A B;  3FS8 A;  3LE4 A;  4A0U A;  3KAG A;  2KXQ A;  2LAJ A;  3TCZ A;  1TR8 A;  4E5R A;  1K9R A;  3TC5 A;  2XP6 A;  3CNG A;  2YSG A;  3KAI A;  1TK7 A;  3KAH A;  4QIB A;  3FSC A;  1WMV A;  2M8J A;  2YSF A;  2YSH A;  5AHT A;  3LKX A;  2QRV A;  2WAE A;  3PQH A;  3KAB A;  2WAD A;  2MDI A;  1EG4 A;  4U86 A;  2DK7 A;  1RP5 A;  2XP9 A;  1WR7 A;  2XP7 A;  2ZQT A;  5E5W A;  2DK1 A;  3NTP A;  2XP5 A;  2DJY A;  1ZCN A;  2E45 A;  2OWO A;  2Q5A A;  2F21 A;  3LKX B;  2XP3 A;  2XPB A;  3M7N A;  2XP4 A;  1K9Q A;  2JMF A;  5CQ2 A;  3KAF A;  4REX A;  3MQH A;  4GLX A;  3MQG A;  2YSI A;  3KCE A;  2ZR4 A;  2JV4 A;  3TDB A;  3WH0 A;  2L4J A;  2ZQV A;  5E64 A;  2M8I A;  1YW5 A;  2YAJ B;  4U84 A;  2DWV A;  2M3O W;  2ITK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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