5AHTA

Third ww domain from the e3 ubiquitin-protein ligase nedd4
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
43
structure length
43
Chain Sequence
GSMEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE NEDD4
publication title The Nedd4-1 Ww Domain Recognizes the Py Motif Peptide Through Coupled Folding and Binding Equilibria.
pubmed doi rcsb
source organism Homo sapiens
total genus 9
structure length 43
sequence length 43
ec nomenclature ec 2.3.2.26: HECT-type E3 ubiquitin transferase.
pdb deposition date 2015-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 5ahtA01
3KAFA 4REXA 2BA1A 2XPBA 3TC5A 1F8AB 1YW5A 1JMQA 1EG4A 2DJYA 2YSIA 2M8JA 3KAGA 3NTPA 2ITKA 2ZR4A 2XP5A 1WMVA 2YSGA 3M85A 2XPAA 3KAHA 2LAJA 3KADA 2DWVA 2Q5AA 1O6WA 4U84A 4E5RA 2XP8A 3KAIA 1NMVA 2MDIA 2M8IA 2E45A 4U85A 4QIBA 2XP4A 3LE4A 2JMFA 2ZQSA 3M7NA 1PINA 2XP7A 2DMVA 2DK1A 5AHTA 2XP9A 3TCZA 2EZ5W 3ODKA 1I5HW 3TDBA 1EG3A 1WR7A 3OOBA 3L4HA 2KXQA 3WH0A 4U86A 1K9QA 1TK7A 2ZR5A 2YSFA 3CNGA 1ZCNA 2RE3A 2ZAJA 2ZR6A 3KABA 2XP3A 2M3OW 2YSBA 2ZQUA 2YSHA 1K9RA 2F21A 2ZQVA 3KCEA 2L4JA 2XP6A 2JX8A 2JV4A 2DK7A 2ZQTA 2JXWA 5CQ2A
chains in the Genus database with same CATH superfamily
3KAFA 4REXA 2YAJB 2BA1A 2XPBA 3TC5A 5E62A 1F8AB 1YW5A 1JMQA 5E5WA 1EG4A 2DJYA 2YSIA 2M8JA 3KAGA 3FS8A 3NTPA 2ITKA 2ZR4A 2XP5A 1WMVA 2YSGA 4A0UA 3M85A 2XPAA 5E64A 3MCBB 3KAHA 2LAJA 3FSCA 5E65A 3KADA 2OWOA 3PQHA 3LKXB 3LKXA 2DWVA 1RP5A 2Q5AA 1O6WA 4U84A 4E5RA 2XP8A 3KAIA 1NMVA 2MDIA 2M8IA 3FSBA 2E45A 4U85A 4QIBA 4A0TA 2XP4A 3LE4A 2JMFA 2ZQSA 3M7NA 1PINA 2XP7A 2DMVA 3MCBA 5E66A 2DK1A 5AHTA 2XP9A 2Y8NB 3TCZA 1TR8A 2EZ5W 3ODKA 1I5HW 2QRVA 3TDBA 1EG3A 1WR7A 3OOBA 3L4HA 2KXQA 3WH0A 4U86A 4GLXA 2WADA 1K9QA 1FLCA 1TK7A 2ZR5A 2YSFA 3CNGA 1ZCNA 2RE3A 2ZAJA 2ZR6A 3KABA 2XP3A 2M3OW 2YSBA 2ZQUA 2YSHA 5U47A 1K9RA 2F21A 2ZQVA 3KCEA 2L4JA 2WAEA 2XP6A 2JX8A 3MQHA 2JV4A 2DK7A 2ZQTA 3MQGA 2JXWA 5CQ2A
chains in the Genus database with same CATH topology
3KAFA 4REXA 2YAJB 2BA1A 2XPBA 3TC5A 5E62A 1F8AB 1YW5A 1JMQA 5E5WA 1EG4A 2DJYA 2YSIA 2M8JA 3KAGA 3FS8A 3NTPA 2ITKA 2ZR4A 2XP5A 1WMVA 2YSGA 4A0UA 3M85A 2XPAA 5E64A 3MCBB 3KAHA 2LAJA 3FSCA 5E65A 3KADA 2OWOA 3PQHA 3LKXB 3LKXA 2DWVA 1RP5A 2Q5AA 1O6WA 4U84A 4E5RA 2XP8A 3KAIA 1NMVA 2MDIA 2M8IA 3FSBA 2E45A 4U85A 4QIBA 4A0TA 2XP4A 3LE4A 2JMFA 2ZQSA 3M7NA 1PINA 2XP7A 2DMVA 3MCBA 5E66A 2DK1A 5AHTA 2XP9A 2Y8NB 3TCZA 1TR8A 2EZ5W 3ODKA 1I5HW 2QRVA 3TDBA 1EG3A 1WR7A 3OOBA 3L4HA 2KXQA 3WH0A 4U86A 4GLXA 2WADA 1K9QA 1FLCA 1TK7A 2ZR5A 2YSFA 3CNGA 1ZCNA 2RE3A 2ZAJA 2ZR6A 3KABA 2XP3A 2M3OW 2YSBA 2ZQUA 2YSHA 5U47A 1K9RA 2F21A 2ZQVA 3KCEA 2L4JA 2WAEA 2XP6A 2JX8A 3MQHA 2JV4A 2DK7A 2ZQTA 3MQGA 2JXWA 5CQ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KAF A;  4REX A;  2BA1 A;  2XPB A;  3TC5 A;  1F8A B;  1YW5 A;  1JMQ A;  1EG4 A;  2DJY A;  2YSI A;  2M8J A;  3KAG A;  3NTP A;  2ITK A;  2ZR4 A;  2XP5 A;  1WMV A;  2YSG A;  3M85 A;  2XPA A;  3KAH A;  2LAJ A;  3KAD A;  2DWV A;  2Q5A A;  1O6W A;  4U84 A;  4E5R A;  2XP8 A;  3KAI A;  1NMV A;  2MDI A;  2M8I A;  2E45 A;  4U85 A;  4QIB A;  2XP4 A;  3LE4 A;  2JMF A;  2ZQS A;  3M7N A;  1PIN A;  2XP7 A;  2DMV A;  2DK1 A;  5AHT A;  2XP9 A;  3TCZ A;  2EZ5 W;  3ODK A;  1I5H W;  3TDB A;  1EG3 A;  1WR7 A;  3OOB A;  3L4H A;  2KXQ A;  3WH0 A;  4U86 A;  1K9Q A;  1TK7 A;  2ZR5 A;  2YSF A;  3CNG A;  1ZCN A;  2RE3 A;  2ZAJ A;  2ZR6 A;  3KAB A;  2XP3 A;  2M3O W;  2YSB A;  2ZQU A;  2YSH A;  1K9R A;  2F21 A;  2ZQV A;  3KCE A;  2L4J A;  2XP6 A;  2JX8 A;  2JV4 A;  2DK7 A;  2ZQT A;  2JXW A;  5CQ2 A; 
#chains in the Genus database with same CATH topology
 3KAF A;  4REX A;  2YAJ B;  2BA1 A;  2XPB A;  3TC5 A;  5E62 A;  1F8A B;  1YW5 A;  1JMQ A;  5E5W A;  1EG4 A;  2DJY A;  2YSI A;  2M8J A;  3KAG A;  3FS8 A;  3NTP A;  2ITK A;  2ZR4 A;  2XP5 A;  1WMV A;  2YSG A;  4A0U A;  3M85 A;  2XPA A;  5E64 A;  3MCB B;  3KAH A;  2LAJ A;  3FSC A;  5E65 A;  3KAD A;  2OWO A;  3PQH A;  3LKX B;  3LKX A;  2DWV A;  1RP5 A;  2Q5A A;  1O6W A;  4U84 A;  4E5R A;  2XP8 A;  3KAI A;  1NMV A;  2MDI A;  2M8I A;  3FSB A;  2E45 A;  4U85 A;  4QIB A;  4A0T A;  2XP4 A;  3LE4 A;  2JMF A;  2ZQS A;  3M7N A;  1PIN A;  2XP7 A;  2DMV A;  3MCB A;  5E66 A;  2DK1 A;  5AHT A;  2XP9 A;  2Y8N B;  3TCZ A;  1TR8 A;  2EZ5 W;  3ODK A;  1I5H W;  2QRV A;  3TDB A;  1EG3 A;  1WR7 A;  3OOB A;  3L4H A;  2KXQ A;  3WH0 A;  4U86 A;  4GLX A;  2WAD A;  1K9Q A;  1FLC A;  1TK7 A;  2ZR5 A;  2YSF A;  3CNG A;  1ZCN A;  2RE3 A;  2ZAJ A;  2ZR6 A;  3KAB A;  2XP3 A;  2M3O W;  2YSB A;  2ZQU A;  2YSH A;  5U47 A;  1K9R A;  2F21 A;  2ZQV A;  3KCE A;  2L4J A;  2WAE A;  2XP6 A;  2JX8 A;  3MQH A;  2JV4 A;  2DK7 A;  2ZQT A;  3MQG A;  2JXW A;  5CQ2 A; 
#chains in the Genus database with same CATH homology
 3KAF A;  4REX A;  2YAJ B;  2BA1 A;  2XPB A;  3TC5 A;  5E62 A;  1F8A B;  1YW5 A;  1JMQ A;  5E5W A;  1EG4 A;  2DJY A;  2YSI A;  2M8J A;  3KAG A;  3FS8 A;  3NTP A;  2ITK A;  2ZR4 A;  2XP5 A;  1WMV A;  2YSG A;  4A0U A;  3M85 A;  2XPA A;  5E64 A;  3MCB B;  3KAH A;  2LAJ A;  3FSC A;  5E65 A;  3KAD A;  2OWO A;  3PQH A;  3LKX B;  3LKX A;  2DWV A;  1RP5 A;  2Q5A A;  1O6W A;  4U84 A;  4E5R A;  2XP8 A;  3KAI A;  1NMV A;  2MDI A;  2M8I A;  3FSB A;  2E45 A;  4U85 A;  4QIB A;  4A0T A;  2XP4 A;  3LE4 A;  2JMF A;  2ZQS A;  3M7N A;  1PIN A;  2XP7 A;  2DMV A;  3MCB A;  5E66 A;  2DK1 A;  5AHT A;  2XP9 A;  2Y8N B;  3TCZ A;  1TR8 A;  2EZ5 W;  3ODK A;  1I5H W;  2QRV A;  3TDB A;  1EG3 A;  1WR7 A;  3OOB A;  3L4H A;  2KXQ A;  3WH0 A;  4U86 A;  4GLX A;  2WAD A;  1K9Q A;  1FLC A;  1TK7 A;  2ZR5 A;  2YSF A;  3CNG A;  1ZCN A;  2RE3 A;  2ZAJ A;  2ZR6 A;  3KAB A;  2XP3 A;  2M3O W;  2YSB A;  2ZQU A;  2YSH A;  5U47 A;  1K9R A;  2F21 A;  2ZQV A;  3KCE A;  2L4J A;  2WAE A;  2XP6 A;  2JX8 A;  3MQH A;  2JV4 A;  2DK7 A;  2ZQT A;  3MQG A;  2JXW A;  5CQ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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