2MDIA

Solution structure of the pp2ww mutant (kpp2ww) of hypb
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
56
structure length
56
Chain Sequence
GSDLPPPSPPAAATIVLPPNWKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Homo sapiens
publication title Autoinhibitory structure of the WW domain of HYPB/SETD2 regulates its interaction with the proline-rich region of huntingtin.
pubmed doi rcsb
molecule keywords Histone-lysine N-methyltransferase SETD2
total genus 2
structure length 56
sequence length 56
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2013-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2mdiA00
5AHTA 3KAHA 1F8AB 3LE4A 2M8JA 2L4JA 1YW5A 1EG3A 2YSBA 2ZAJA 1WR7A 2ZR4A 2YSFA 1EG4A 2DK7A 2MDIA 3L4HA 1NMVA 2XPAA 4U84A 3WH0A 3TCZA 1WMVA 1I5HW 2XP3A 1O6WA 2XP4A 3KAFA 2ZQUA 3NTPA 1K9RA 2ZR6A 2ITKA 4U86A 2LAJA 3CNGA 2YSIA 2JV4A 2XP9A 2ZR5A 3KADA 2JXWA 2Q5AA 2DJYA 1JMQA 2XP5A 1PINA 2YSHA 2EZ5W 2RE3A 3M85A 1ZCNA 2KXQA 2F21A 2ZQTA 2JX8A 3KCEA 2M3OW 4REXA 1TK7A 3OOBA 2JMFA 2XP6A 2XP7A 3TDBA 2XP8A 3KAGA 2YSGA 2DK1A 2XPBA 5CQ2A 3ODKA 1K9QA 2BA1A 3KABA 2DWVA 3TC5A 3M7NA 2ZQVA 2M8IA 4U85A 3KAIA 2E45A 4E5RA 4QIBA 2ZQSA 2DMVA
chains in the Genus database with same CATH superfamily
5AHTA 4A0TA 3KAHA 1F8AB 3LE4A 2M8JA 2L4JA 5E62A 2QRVA 1YW5A 1EG3A 5E65A 2YSBA 2ZAJA 1WR7A 3FS8A 2ZR4A 2YSFA 1EG4A 2DK7A 2MDIA 3L4HA 1NMVA 2XPAA 1FLCA 4U84A 3WH0A 3TCZA 3FSBA 1WMVA 1I5HW 2XP3A 3FSCA 1O6WA 2XP4A 3KAFA 2ZQUA 3NTPA 1K9RA 2ZR6A 2ITKA 4U86A 2LAJA 3CNGA 2YSIA 2JV4A 1TR8A 4GLXA 3LKXA 2XP9A 3LKXB 2ZR5A 3KADA 2JXWA 2Q5AA 2DJYA 5E5WA 3MQHA 1JMQA 3MQGA 1RP5A 1PINA 2XP5A 2YSHA 2EZ5W 2RE3A 3M85A 5U47A 2Y8NB 4A0UA 1ZCNA 2KXQA 2F21A 2ZQTA 2OWOA 2JX8A 3KCEA 2M3OW 3MCBA 4REXA 3MCBB 1TK7A 3OOBA 2WAEA 2JMFA 2XP6A 2XP7A 3PQHA 3TDBA 2XP8A 3KAGA 2YSGA 2DK1A 2XPBA 5CQ2A 3ODKA 1K9QA 2BA1A 3KABA 5E64A 2DWVA 3TC5A 2WADA 3M7NA 2ZQVA 2M8IA 5E66A 4U85A 3KAIA 2YAJB 2E45A 4E5RA 4QIBA 2ZQSA 2DMVA
chains in the Genus database with same CATH topology
5AHTA 4A0TA 3KAHA 1F8AB 3LE4A 2M8JA 2L4JA 5E62A 2QRVA 1YW5A 1EG3A 5E65A 2YSBA 2ZAJA 1WR7A 3FS8A 2ZR4A 2YSFA 1EG4A 2DK7A 2MDIA 3L4HA 1NMVA 2XPAA 1FLCA 4U84A 3WH0A 3TCZA 3FSBA 1WMVA 1I5HW 2XP3A 3FSCA 1O6WA 2XP4A 3KAFA 2ZQUA 3NTPA 1K9RA 2ZR6A 2ITKA 4U86A 2LAJA 3CNGA 2YSIA 2JV4A 1TR8A 4GLXA 3LKXA 2XP9A 3LKXB 2ZR5A 3KADA 2JXWA 2Q5AA 2DJYA 5E5WA 3MQHA 1JMQA 3MQGA 1RP5A 1PINA 2XP5A 2YSHA 2EZ5W 2RE3A 3M85A 5U47A 2Y8NB 4A0UA 1ZCNA 2KXQA 2F21A 2ZQTA 2OWOA 2JX8A 3KCEA 2M3OW 3MCBA 4REXA 3MCBB 1TK7A 3OOBA 2WAEA 2JMFA 2XP6A 2XP7A 3PQHA 3TDBA 2XP8A 3KAGA 2YSGA 2DK1A 2XPBA 5CQ2A 3ODKA 1K9QA 2BA1A 3KABA 5E64A 2DWVA 3TC5A 2WADA 3M7NA 2ZQVA 2M8IA 5E66A 4U85A 3KAIA 2YAJB 2E45A 4E5RA 4QIBA 2ZQSA 2DMVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AHT A;  3KAH A;  1F8A B;  3LE4 A;  2M8J A;  2L4J A;  1YW5 A;  1EG3 A;  2YSB A;  2ZAJ A;  1WR7 A;  2ZR4 A;  2YSF A;  1EG4 A;  2DK7 A;  2MDI A;  3L4H A;  1NMV A;  2XPA A;  4U84 A;  3WH0 A;  3TCZ A;  1WMV A;  1I5H W;  2XP3 A;  1O6W A;  2XP4 A;  3KAF A;  2ZQU A;  3NTP A;  1K9R A;  2ZR6 A;  2ITK A;  4U86 A;  2LAJ A;  3CNG A;  2YSI A;  2JV4 A;  2XP9 A;  2ZR5 A;  3KAD A;  2JXW A;  2Q5A A;  2DJY A;  1JMQ A;  2XP5 A;  1PIN A;  2YSH A;  2EZ5 W;  2RE3 A;  3M85 A;  1ZCN A;  2KXQ A;  2F21 A;  2ZQT A;  2JX8 A;  3KCE A;  2M3O W;  4REX A;  1TK7 A;  3OOB A;  2JMF A;  2XP6 A;  2XP7 A;  3TDB A;  2XP8 A;  3KAG A;  2YSG A;  2DK1 A;  2XPB A;  5CQ2 A;  3ODK A;  1K9Q A;  2BA1 A;  3KAB A;  2DWV A;  3TC5 A;  3M7N A;  2ZQV A;  2M8I A;  4U85 A;  3KAI A;  2E45 A;  4E5R A;  4QIB A;  2ZQS A;  2DMV A; 
#chains in the Genus database with same CATH topology
 5AHT A;  4A0T A;  3KAH A;  1F8A B;  3LE4 A;  2M8J A;  2L4J A;  5E62 A;  2QRV A;  1YW5 A;  1EG3 A;  5E65 A;  2YSB A;  2ZAJ A;  1WR7 A;  3FS8 A;  2ZR4 A;  2YSF A;  1EG4 A;  2DK7 A;  2MDI A;  3L4H A;  1NMV A;  2XPA A;  1FLC A;  4U84 A;  3WH0 A;  3TCZ A;  3FSB A;  1WMV A;  1I5H W;  2XP3 A;  3FSC A;  1O6W A;  2XP4 A;  3KAF A;  2ZQU A;  3NTP A;  1K9R A;  2ZR6 A;  2ITK A;  4U86 A;  2LAJ A;  3CNG A;  2YSI A;  2JV4 A;  1TR8 A;  4GLX A;  3LKX A;  2XP9 A;  3LKX B;  2ZR5 A;  3KAD A;  2JXW A;  2Q5A A;  2DJY A;  5E5W A;  3MQH A;  1JMQ A;  3MQG A;  1RP5 A;  1PIN A;  2XP5 A;  2YSH A;  2EZ5 W;  2RE3 A;  3M85 A;  5U47 A;  2Y8N B;  4A0U A;  1ZCN A;  2KXQ A;  2F21 A;  2ZQT A;  2OWO A;  2JX8 A;  3KCE A;  2M3O W;  3MCB A;  4REX A;  3MCB B;  1TK7 A;  3OOB A;  2WAE A;  2JMF A;  2XP6 A;  2XP7 A;  3PQH A;  3TDB A;  2XP8 A;  3KAG A;  2YSG A;  2DK1 A;  2XPB A;  5CQ2 A;  3ODK A;  1K9Q A;  2BA1 A;  3KAB A;  5E64 A;  2DWV A;  3TC5 A;  2WAD A;  3M7N A;  2ZQV A;  2M8I A;  5E66 A;  4U85 A;  3KAI A;  2YAJ B;  2E45 A;  4E5R A;  4QIB A;  2ZQS A;  2DMV A; 
#chains in the Genus database with same CATH homology
 5AHT A;  4A0T A;  3KAH A;  1F8A B;  3LE4 A;  2M8J A;  2L4J A;  5E62 A;  2QRV A;  1YW5 A;  1EG3 A;  5E65 A;  2YSB A;  2ZAJ A;  1WR7 A;  3FS8 A;  2ZR4 A;  2YSF A;  1EG4 A;  2DK7 A;  2MDI A;  3L4H A;  1NMV A;  2XPA A;  1FLC A;  4U84 A;  3WH0 A;  3TCZ A;  3FSB A;  1WMV A;  1I5H W;  2XP3 A;  3FSC A;  1O6W A;  2XP4 A;  3KAF A;  2ZQU A;  3NTP A;  1K9R A;  2ZR6 A;  2ITK A;  4U86 A;  2LAJ A;  3CNG A;  2YSI A;  2JV4 A;  1TR8 A;  4GLX A;  3LKX A;  2XP9 A;  3LKX B;  2ZR5 A;  3KAD A;  2JXW A;  2Q5A A;  2DJY A;  5E5W A;  3MQH A;  1JMQ A;  3MQG A;  1RP5 A;  1PIN A;  2XP5 A;  2YSH A;  2EZ5 W;  2RE3 A;  3M85 A;  5U47 A;  2Y8N B;  4A0U A;  1ZCN A;  2KXQ A;  2F21 A;  2ZQT A;  2OWO A;  2JX8 A;  3KCE A;  2M3O W;  3MCB A;  4REX A;  3MCB B;  1TK7 A;  3OOB A;  2WAE A;  2JMF A;  2XP6 A;  2XP7 A;  3PQH A;  3TDB A;  2XP8 A;  3KAG A;  2YSG A;  2DK1 A;  2XPB A;  5CQ2 A;  3ODK A;  1K9Q A;  2BA1 A;  3KAB A;  5E64 A;  2DWV A;  3TC5 A;  2WAD A;  3M7N A;  2ZQV A;  2M8I A;  5E66 A;  4U85 A;  3KAI A;  2YAJ B;  2E45 A;  4E5R A;  4QIB A;  2ZQS A;  2DMV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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