1WMVA

Solution structure of the second ww domain of wwox
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
54
structure length
54
Chain Sequence
GSAKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase, apoptosis
source organism Homo sapiens
publication title Solution structure of the second WW domain of WWOX
rcsb
molecule keywords WW domain containing oxidoreductase
total genus 5
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 2004-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1wmvA01
4U85A 1WMVA 1PINA 2L4JA 2YSBA 2BA1A 2ZQTA 2XP5A 1JMQA 2JXWA 2EZ5W 2YSIA 1EG3A 2ZQUA 3TC5A 3TDBA 4U84A 2XP8A 2M3OW 2YSFA 3OOBA 2ZQVA 2DWVA 3KAHA 3KAGA 2YSHA 3LE4A 3M85A 2XP3A 1EG4A 3KABA 1TK7A 1F8AB 2XP4A 2XP7A 4E5RA 2ZR4A 2ZR5A 2E45A 2XPBA 2M8JA 3CNGA 2XP9A 1I5HW 1WR7A 2XPAA 4REXA 3M7NA 2JMFA 1K9RA 2JX8A 3WH0A 3TCZA 3NTPA 2DJYA 2M8IA 1K9QA 2DK1A 3KADA 5AHTA 2ZAJA 2ITKA 2JV4A 3ODKA 2KXQA 2LAJA 2ZR6A 1NMVA 2MDIA 3KAIA 2DMVA 3L4HA 5CQ2A 2ZQSA 2YSGA 3KAFA 1ZCNA 2DK7A 1YW5A 4U86A 2XP6A 2F21A 1O6WA 2RE3A 2Q5AA 3KCEA 4QIBA
chains in the Genus database with same CATH superfamily
4U85A 1WMVA 1PINA 2L4JA 2YSBA 2BA1A 5E64A 2ZQTA 2XP5A 1JMQA 2JXWA 2EZ5W 2YSIA 3LKXA 1EG3A 2ZQUA 3TC5A 4A0UA 1FLCA 3TDBA 4U84A 2XP8A 2M3OW 2YSFA 3OOBA 2ZQVA 2DWVA 4GLXA 3KAHA 3KAGA 5E5WA 2YSHA 3LE4A 3M85A 2XP3A 1EG4A 3KABA 1TK7A 1F8AB 2XP4A 5E66A 2XP7A 4E5RA 2ZR4A 2ZR5A 2E45A 2XPBA 3MCBA 3FS8A 1TR8A 5U47A 2M8JA 3CNGA 2XP9A 1I5HW 1WR7A 2XPAA 4REXA 3M7NA 2JMFA 1K9RA 2JX8A 3WH0A 3TCZA 3NTPA 2DJYA 2M8IA 1K9QA 4A0TA 3LKXB 2OWOA 2DK1A 3KADA 5AHTA 2WAEA 2WADA 5E62A 1RP5A 2ZAJA 2ITKA 2JV4A 3ODKA 2KXQA 2LAJA 2ZR6A 1NMVA 2MDIA 3KAIA 3PQHA 2DMVA 2Y8NB 3L4HA 5CQ2A 2QRVA 3MQGA 2ZQSA 2YSGA 3KAFA 1ZCNA 2DK7A 1YW5A 3FSCA 4U86A 2XP6A 2F21A 1O6WA 3FSBA 3MQHA 5E65A 2RE3A 2Q5AA 3KCEA 2YAJB 3MCBB 4QIBA
chains in the Genus database with same CATH topology
4U85A 1WMVA 1PINA 2L4JA 2YSBA 2BA1A 5E64A 2ZQTA 2XP5A 1JMQA 2JXWA 2EZ5W 2YSIA 3LKXA 1EG3A 2ZQUA 3TC5A 4A0UA 1FLCA 3TDBA 4U84A 2XP8A 2M3OW 2YSFA 3OOBA 2ZQVA 2DWVA 4GLXA 3KAHA 3KAGA 5E5WA 2YSHA 3LE4A 3M85A 2XP3A 1EG4A 3KABA 1TK7A 1F8AB 2XP4A 5E66A 2XP7A 4E5RA 2ZR4A 2ZR5A 2E45A 2XPBA 3MCBA 3FS8A 1TR8A 5U47A 2M8JA 3CNGA 2XP9A 1I5HW 1WR7A 2XPAA 4REXA 3M7NA 2JMFA 1K9RA 2JX8A 3WH0A 3TCZA 3NTPA 2DJYA 2M8IA 1K9QA 4A0TA 3LKXB 2OWOA 2DK1A 3KADA 5AHTA 2WAEA 2WADA 5E62A 1RP5A 2ZAJA 2ITKA 2JV4A 3ODKA 2KXQA 2LAJA 2ZR6A 1NMVA 2MDIA 3KAIA 3PQHA 2DMVA 2Y8NB 3L4HA 5CQ2A 2QRVA 3MQGA 2ZQSA 2YSGA 3KAFA 1ZCNA 2DK7A 1YW5A 3FSCA 4U86A 2XP6A 2F21A 1O6WA 3FSBA 3MQHA 5E65A 2RE3A 2Q5AA 3KCEA 2YAJB 3MCBB 4QIBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U85 A;  1WMV A;  1PIN A;  2L4J A;  2YSB A;  2BA1 A;  2ZQT A;  2XP5 A;  1JMQ A;  2JXW A;  2EZ5 W;  2YSI A;  1EG3 A;  2ZQU A;  3TC5 A;  3TDB A;  4U84 A;  2XP8 A;  2M3O W;  2YSF A;  3OOB A;  2ZQV A;  2DWV A;  3KAH A;  3KAG A;  2YSH A;  3LE4 A;  3M85 A;  2XP3 A;  1EG4 A;  3KAB A;  1TK7 A;  1F8A B;  2XP4 A;  2XP7 A;  4E5R A;  2ZR4 A;  2ZR5 A;  2E45 A;  2XPB A;  2M8J A;  3CNG A;  2XP9 A;  1I5H W;  1WR7 A;  2XPA A;  4REX A;  3M7N A;  2JMF A;  1K9R A;  2JX8 A;  3WH0 A;  3TCZ A;  3NTP A;  2DJY A;  2M8I A;  1K9Q A;  2DK1 A;  3KAD A;  5AHT A;  2ZAJ A;  2ITK A;  2JV4 A;  3ODK A;  2KXQ A;  2LAJ A;  2ZR6 A;  1NMV A;  2MDI A;  3KAI A;  2DMV A;  3L4H A;  5CQ2 A;  2ZQS A;  2YSG A;  3KAF A;  1ZCN A;  2DK7 A;  1YW5 A;  4U86 A;  2XP6 A;  2F21 A;  1O6W A;  2RE3 A;  2Q5A A;  3KCE A;  4QIB A; 
#chains in the Genus database with same CATH topology
 4U85 A;  1WMV A;  1PIN A;  2L4J A;  2YSB A;  2BA1 A;  5E64 A;  2ZQT A;  2XP5 A;  1JMQ A;  2JXW A;  2EZ5 W;  2YSI A;  3LKX A;  1EG3 A;  2ZQU A;  3TC5 A;  4A0U A;  1FLC A;  3TDB A;  4U84 A;  2XP8 A;  2M3O W;  2YSF A;  3OOB A;  2ZQV A;  2DWV A;  4GLX A;  3KAH A;  3KAG A;  5E5W A;  2YSH A;  3LE4 A;  3M85 A;  2XP3 A;  1EG4 A;  3KAB A;  1TK7 A;  1F8A B;  2XP4 A;  5E66 A;  2XP7 A;  4E5R A;  2ZR4 A;  2ZR5 A;  2E45 A;  2XPB A;  3MCB A;  3FS8 A;  1TR8 A;  5U47 A;  2M8J A;  3CNG A;  2XP9 A;  1I5H W;  1WR7 A;  2XPA A;  4REX A;  3M7N A;  2JMF A;  1K9R A;  2JX8 A;  3WH0 A;  3TCZ A;  3NTP A;  2DJY A;  2M8I A;  1K9Q A;  4A0T A;  3LKX B;  2OWO A;  2DK1 A;  3KAD A;  5AHT A;  2WAE A;  2WAD A;  5E62 A;  1RP5 A;  2ZAJ A;  2ITK A;  2JV4 A;  3ODK A;  2KXQ A;  2LAJ A;  2ZR6 A;  1NMV A;  2MDI A;  3KAI A;  3PQH A;  2DMV A;  2Y8N B;  3L4H A;  5CQ2 A;  2QRV A;  3MQG A;  2ZQS A;  2YSG A;  3KAF A;  1ZCN A;  2DK7 A;  1YW5 A;  3FSC A;  4U86 A;  2XP6 A;  2F21 A;  1O6W A;  3FSB A;  3MQH A;  5E65 A;  2RE3 A;  2Q5A A;  3KCE A;  2YAJ B;  3MCB B;  4QIB A; 
#chains in the Genus database with same CATH homology
 4U85 A;  1WMV A;  1PIN A;  2L4J A;  2YSB A;  2BA1 A;  5E64 A;  2ZQT A;  2XP5 A;  1JMQ A;  2JXW A;  2EZ5 W;  2YSI A;  3LKX A;  1EG3 A;  2ZQU A;  3TC5 A;  4A0U A;  1FLC A;  3TDB A;  4U84 A;  2XP8 A;  2M3O W;  2YSF A;  3OOB A;  2ZQV A;  2DWV A;  4GLX A;  3KAH A;  3KAG A;  5E5W A;  2YSH A;  3LE4 A;  3M85 A;  2XP3 A;  1EG4 A;  3KAB A;  1TK7 A;  1F8A B;  2XP4 A;  5E66 A;  2XP7 A;  4E5R A;  2ZR4 A;  2ZR5 A;  2E45 A;  2XPB A;  3MCB A;  3FS8 A;  1TR8 A;  5U47 A;  2M8J A;  3CNG A;  2XP9 A;  1I5H W;  1WR7 A;  2XPA A;  4REX A;  3M7N A;  2JMF A;  1K9R A;  2JX8 A;  3WH0 A;  3TCZ A;  3NTP A;  2DJY A;  2M8I A;  1K9Q A;  4A0T A;  3LKX B;  2OWO A;  2DK1 A;  3KAD A;  5AHT A;  2WAE A;  2WAD A;  5E62 A;  1RP5 A;  2ZAJ A;  2ITK A;  2JV4 A;  3ODK A;  2KXQ A;  2LAJ A;  2ZR6 A;  1NMV A;  2MDI A;  3KAI A;  3PQH A;  2DMV A;  2Y8N B;  3L4H A;  5CQ2 A;  2QRV A;  3MQG A;  2ZQS A;  2YSG A;  3KAF A;  1ZCN A;  2DK7 A;  1YW5 A;  3FSC A;  4U86 A;  2XP6 A;  2F21 A;  1O6W A;  3FSB A;  3MQH A;  5E65 A;  2RE3 A;  2Q5A A;  3KCE A;  2YAJ B;  3MCB B;  4QIB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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