1WMVA

Solution structure of the second ww domain of wwox
Total Genus 5
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
54
structure length
54
Chain Sequence
b'GSAKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKP'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Solution structure of the second WW domain of WWOX
rcsb
molecule keywords WW domain containing oxidoreductase
source organism Homo sapiens
molecule tags Oxidoreductase, apoptosis
total genus 5
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 2004-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1wmvA01
3LE4A 2DK7A 2ITKA 2L4JA 2XP3A 2ZQSA 2XP6A 1O6WA 2Q5AA 1K9QA 4REXA 1TK7A 3KADA 2JXWA 2LAJA 2YSBA 2JMFA 2JV4A 1PINA 3L4HA 1F8AB 2M8IA 2ZR6A 2YSIA 2ZR5A 3KAIA 1NMVA 2XP5A 2JX8A 1K9RA 3M85A 2ZQUA 2F21A 1WMVA 3KAGA 2XPAA 2ZAJA 3CNGA 2XP9A 3TC5A 3KABA 5CQ2A 4E5RA 2DK1A 2DWVA 2MDIA 4QIBA 3TCZA 3KCEA 2KXQA 2ZQTA 1I5HW 2EZ5W 2RE3A 2M3OW 4U84A 2XP7A 1WR7A 2DMVA 3KAHA 3OOBA 2XP8A 2M8JA 3WH0A 2BA1A 2DJYA 5AHTA 1ZCNA 3KAFA 2ZQVA 2YSFA 2E45A 1JMQA 1EG4A 2YSGA 3TDBA 2XPBA 2ZR4A 3NTPA 1EG3A 3ODKA 4U85A 2YSHA 4U86A 2XP4A 3M7NA 1YW5A
chains in the Genus database with same CATH superfamily
3LE4A 2DK7A 5U47A 4A0UA 2ITKA 2L4JA 2XP3A 2ZQSA 2XP6A 5E64A 1O6WA 2Q5AA 1K9QA 4REXA 1TK7A 3KADA 2JXWA 5E65A 3FS8A 2LAJA 5E62A 2WAEA 2YSBA 2JMFA 3MCBB 2JV4A 1PINA 3L4HA 1F8AB 2M8IA 2ZR6A 2YSIA 2ZR5A 3KAIA 2QRVA 1NMVA 3MCBA 2XP5A 2JX8A 1K9RA 3M85A 2ZQUA 2YAJB 2F21A 2Y8NB 1WMVA 3KAGA 2XPAA 2ZAJA 3CNGA 2XP9A 3TC5A 3KABA 5CQ2A 1RP5A 4E5RA 5E5WA 2DK1A 2DWVA 2MDIA 4QIBA 3TCZA 3KCEA 3MQGA 2KXQA 2ZQTA 1I5HW 3FSBA 3MQHA 1FLCA 2WADA 3LKXB 2EZ5W 2RE3A 3PQHA 2M3OW 4U84A 2XP7A 1WR7A 2DMVA 3LKXA 3KAHA 3OOBA 2XP8A 2M8JA 3WH0A 1TR8A 3FSCA 2BA1A 2OWOA 2DJYA 5AHTA 1ZCNA 3KAFA 2ZQVA 2YSFA 2E45A 1JMQA 1EG4A 2YSGA 5E66A 3TDBA 2XPBA 2ZR4A 3NTPA 4A0TA 1EG3A 3ODKA 4U85A 4GLXA 2YSHA 4U86A 2XP4A 3M7NA 1YW5A
chains in the Genus database with same CATH topology
3LE4A 2DK7A 5U47A 4A0UA 2ITKA 2L4JA 2XP3A 2ZQSA 2XP6A 5E64A 1O6WA 2Q5AA 1K9QA 4REXA 1TK7A 3KADA 2JXWA 5E65A 3FS8A 2LAJA 5E62A 2WAEA 2YSBA 2JMFA 3MCBB 2JV4A 1PINA 3L4HA 1F8AB 2M8IA 2ZR6A 2YSIA 2ZR5A 3KAIA 2QRVA 1NMVA 3MCBA 2XP5A 2JX8A 1K9RA 3M85A 2ZQUA 2YAJB 2F21A 2Y8NB 1WMVA 3KAGA 2XPAA 2ZAJA 3CNGA 2XP9A 3TC5A 3KABA 5CQ2A 1RP5A 4E5RA 5E5WA 2DK1A 2DWVA 2MDIA 4QIBA 3TCZA 3KCEA 3MQGA 2KXQA 2ZQTA 1I5HW 3FSBA 3MQHA 1FLCA 2WADA 3LKXB 2EZ5W 2RE3A 3PQHA 2M3OW 4U84A 2XP7A 1WR7A 2DMVA 3LKXA 3KAHA 3OOBA 2XP8A 2M8JA 3WH0A 1TR8A 3FSCA 2BA1A 2OWOA 2DJYA 5AHTA 1ZCNA 3KAFA 2ZQVA 2YSFA 2E45A 1JMQA 1EG4A 2YSGA 5E66A 3TDBA 2XPBA 2ZR4A 3NTPA 4A0TA 1EG3A 3ODKA 4U85A 4GLXA 2YSHA 4U86A 2XP4A 3M7NA 1YW5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LE4 A;  2DK7 A;  2ITK A;  2L4J A;  2XP3 A;  2ZQS A;  2XP6 A;  1O6W A;  2Q5A A;  1K9Q A;  4REX A;  1TK7 A;  3KAD A;  2JXW A;  2LAJ A;  2YSB A;  2JMF A;  2JV4 A;  1PIN A;  3L4H A;  1F8A B;  2M8I A;  2ZR6 A;  2YSI A;  2ZR5 A;  3KAI A;  1NMV A;  2XP5 A;  2JX8 A;  1K9R A;  3M85 A;  2ZQU A;  2F21 A;  1WMV A;  3KAG A;  2XPA A;  2ZAJ A;  3CNG A;  2XP9 A;  3TC5 A;  3KAB A;  5CQ2 A;  4E5R A;  2DK1 A;  2DWV A;  2MDI A;  4QIB A;  3TCZ A;  3KCE A;  2KXQ A;  2ZQT A;  1I5H W;  2EZ5 W;  2RE3 A;  2M3O W;  4U84 A;  2XP7 A;  1WR7 A;  2DMV A;  3KAH A;  3OOB A;  2XP8 A;  2M8J A;  3WH0 A;  2BA1 A;  2DJY A;  5AHT A;  1ZCN A;  3KAF A;  2ZQV A;  2YSF A;  2E45 A;  1JMQ A;  1EG4 A;  2YSG A;  3TDB A;  2XPB A;  2ZR4 A;  3NTP A;  1EG3 A;  3ODK A;  4U85 A;  2YSH A;  4U86 A;  2XP4 A;  3M7N A;  1YW5 A; 
#chains in the Genus database with same CATH topology
 3LE4 A;  2DK7 A;  5U47 A;  4A0U A;  2ITK A;  2L4J A;  2XP3 A;  2ZQS A;  2XP6 A;  5E64 A;  1O6W A;  2Q5A A;  1K9Q A;  4REX A;  1TK7 A;  3KAD A;  2JXW A;  5E65 A;  3FS8 A;  2LAJ A;  5E62 A;  2WAE A;  2YSB A;  2JMF A;  3MCB B;  2JV4 A;  1PIN A;  3L4H A;  1F8A B;  2M8I A;  2ZR6 A;  2YSI A;  2ZR5 A;  3KAI A;  2QRV A;  1NMV A;  3MCB A;  2XP5 A;  2JX8 A;  1K9R A;  3M85 A;  2ZQU A;  2YAJ B;  2F21 A;  2Y8N B;  1WMV A;  3KAG A;  2XPA A;  2ZAJ A;  3CNG A;  2XP9 A;  3TC5 A;  3KAB A;  5CQ2 A;  1RP5 A;  4E5R A;  5E5W A;  2DK1 A;  2DWV A;  2MDI A;  4QIB A;  3TCZ A;  3KCE A;  3MQG A;  2KXQ A;  2ZQT A;  1I5H W;  3FSB A;  3MQH A;  1FLC A;  2WAD A;  3LKX B;  2EZ5 W;  2RE3 A;  3PQH A;  2M3O W;  4U84 A;  2XP7 A;  1WR7 A;  2DMV A;  3LKX A;  3KAH A;  3OOB A;  2XP8 A;  2M8J A;  3WH0 A;  1TR8 A;  3FSC A;  2BA1 A;  2OWO A;  2DJY A;  5AHT A;  1ZCN A;  3KAF A;  2ZQV A;  2YSF A;  2E45 A;  1JMQ A;  1EG4 A;  2YSG A;  5E66 A;  3TDB A;  2XPB A;  2ZR4 A;  3NTP A;  4A0T A;  1EG3 A;  3ODK A;  4U85 A;  4GLX A;  2YSH A;  4U86 A;  2XP4 A;  3M7N A;  1YW5 A; 
#chains in the Genus database with same CATH homology
 3LE4 A;  2DK7 A;  5U47 A;  4A0U A;  2ITK A;  2L4J A;  2XP3 A;  2ZQS A;  2XP6 A;  5E64 A;  1O6W A;  2Q5A A;  1K9Q A;  4REX A;  1TK7 A;  3KAD A;  2JXW A;  5E65 A;  3FS8 A;  2LAJ A;  5E62 A;  2WAE A;  2YSB A;  2JMF A;  3MCB B;  2JV4 A;  1PIN A;  3L4H A;  1F8A B;  2M8I A;  2ZR6 A;  2YSI A;  2ZR5 A;  3KAI A;  2QRV A;  1NMV A;  3MCB A;  2XP5 A;  2JX8 A;  1K9R A;  3M85 A;  2ZQU A;  2YAJ B;  2F21 A;  2Y8N B;  1WMV A;  3KAG A;  2XPA A;  2ZAJ A;  3CNG A;  2XP9 A;  3TC5 A;  3KAB A;  5CQ2 A;  1RP5 A;  4E5R A;  5E5W A;  2DK1 A;  2DWV A;  2MDI A;  4QIB A;  3TCZ A;  3KCE A;  3MQG A;  2KXQ A;  2ZQT A;  1I5H W;  3FSB A;  3MQH A;  1FLC A;  2WAD A;  3LKX B;  2EZ5 W;  2RE3 A;  3PQH A;  2M3O W;  4U84 A;  2XP7 A;  1WR7 A;  2DMV A;  3LKX A;  3KAH A;  3OOB A;  2XP8 A;  2M8J A;  3WH0 A;  1TR8 A;  3FSC A;  2BA1 A;  2OWO A;  2DJY A;  5AHT A;  1ZCN A;  3KAF A;  2ZQV A;  2YSF A;  2E45 A;  1JMQ A;  1EG4 A;  2YSG A;  5E66 A;  3TDB A;  2XPB A;  2ZR4 A;  3NTP A;  4A0T A;  1EG3 A;  3ODK A;  4U85 A;  4GLX A;  2YSH A;  4U86 A;  2XP4 A;  3M7N A;  1YW5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...