2YSGA

Solution structure of the ww domain from the human syntaxin-binding protein 4
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
GSSGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVMS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Syntaxin-binding protein 4
publication title Solution structure of the WW domain from the human syntaxin-binding protein 4
rcsb
source organism Homo sapiens
total genus 2
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2ysgA01
2KXQA 2XP7A 4REXA 1WR7A 4QIBA 2E45A 2ITKA 2M8IA 4U86A 3OOBA 1PINA 3TDBA 4E5RA 2LAJA 3LE4A 2DK1A 2YSGA 1WMVA 3M7NA 3TCZA 3WH0A 2XP3A 2YSIA 3KABA 2M3OW 2YSBA 5AHTA 2DWVA 2XP5A 2XP9A 1I5HW 3KADA 1K9QA 2ZAJA 1EG3A 3ODKA 3M85A 1ZCNA 2DJYA 2M8JA 2RE3A 2XP8A 2ZQUA 2MDIA 3L4HA 2F21A 1O6WA 2JX8A 2YSFA 2ZQTA 3KAFA 3CNGA 3NTPA 2ZR4A 2XPBA 3KCEA 3KAIA 1TK7A 2EZ5W 1YW5A 1K9RA 2JXWA 2L4JA 2JV4A 3KAGA 1F8AB 2DK7A 4U84A 4U85A 2ZQSA 3TC5A 2Q5AA 2YSHA 2JMFA 2ZR6A 2BA1A 1NMVA 3KAHA 2XP4A 2ZQVA 1JMQA 2ZR5A 2XPAA 5CQ2A 2DMVA 1EG4A 2XP6A
chains in the Genus database with same CATH superfamily
2KXQA 4A0TA 3MQGA 2XP7A 4REXA 1WR7A 4QIBA 2E45A 2ITKA 3MQHA 2M8IA 4U86A 3OOBA 1PINA 3TDBA 4E5RA 2LAJA 3LE4A 3MCBA 3FSCA 2DK1A 2OWOA 2WAEA 2YSGA 1WMVA 2WADA 3M7NA 3TCZA 3WH0A 2XP3A 2YSIA 1RP5A 3KABA 2M3OW 2YSBA 5E62A 5AHTA 2DWVA 2XP5A 5E64A 2XP9A 1I5HW 2QRVA 3KADA 3PQHA 1K9QA 2ZAJA 1EG3A 3ODKA 3LKXB 3M85A 1ZCNA 2DJYA 2M8JA 2RE3A 2XP8A 2ZQUA 3FSBA 2MDIA 1FLCA 5U47A 3L4HA 2F21A 1O6WA 2JX8A 2YSFA 2ZQTA 3KAFA 4GLXA 3CNGA 3NTPA 2ZR4A 2XPBA 3KCEA 2Y8NB 3KAIA 1TK7A 2YAJB 2EZ5W 1YW5A 1K9RA 2JXWA 2L4JA 2JV4A 3KAGA 1F8AB 2DK7A 3LKXA 4U84A 5E66A 4U85A 1TR8A 2ZQSA 5E65A 3TC5A 3MCBB 2Q5AA 2YSHA 2JMFA 4A0UA 2ZR6A 2BA1A 1NMVA 3KAHA 2XP4A 2ZQVA 1JMQA 2ZR5A 3FS8A 5E5WA 2XPAA 5CQ2A 2DMVA 1EG4A 2XP6A
chains in the Genus database with same CATH topology
2KXQA 4A0TA 3MQGA 2XP7A 4REXA 1WR7A 4QIBA 2E45A 2ITKA 3MQHA 2M8IA 4U86A 3OOBA 1PINA 3TDBA 4E5RA 2LAJA 3LE4A 3MCBA 3FSCA 2DK1A 2OWOA 2WAEA 2YSGA 1WMVA 2WADA 3M7NA 3TCZA 3WH0A 2XP3A 2YSIA 1RP5A 3KABA 2M3OW 2YSBA 5E62A 5AHTA 2DWVA 2XP5A 5E64A 2XP9A 1I5HW 2QRVA 3KADA 3PQHA 1K9QA 2ZAJA 1EG3A 3ODKA 3LKXB 3M85A 1ZCNA 2DJYA 2M8JA 2RE3A 2XP8A 2ZQUA 3FSBA 2MDIA 1FLCA 5U47A 3L4HA 2F21A 1O6WA 2JX8A 2YSFA 2ZQTA 3KAFA 4GLXA 3CNGA 3NTPA 2ZR4A 2XPBA 3KCEA 2Y8NB 3KAIA 1TK7A 2YAJB 2EZ5W 1YW5A 1K9RA 2JXWA 2L4JA 2JV4A 3KAGA 1F8AB 2DK7A 3LKXA 4U84A 5E66A 4U85A 1TR8A 2ZQSA 5E65A 3TC5A 3MCBB 2Q5AA 2YSHA 2JMFA 4A0UA 2ZR6A 2BA1A 1NMVA 3KAHA 2XP4A 2ZQVA 1JMQA 2ZR5A 3FS8A 5E5WA 2XPAA 5CQ2A 2DMVA 1EG4A 2XP6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXQ A;  2XP7 A;  4REX A;  1WR7 A;  4QIB A;  2E45 A;  2ITK A;  2M8I A;  4U86 A;  3OOB A;  1PIN A;  3TDB A;  4E5R A;  2LAJ A;  3LE4 A;  2DK1 A;  2YSG A;  1WMV A;  3M7N A;  3TCZ A;  3WH0 A;  2XP3 A;  2YSI A;  3KAB A;  2M3O W;  2YSB A;  5AHT A;  2DWV A;  2XP5 A;  2XP9 A;  1I5H W;  3KAD A;  1K9Q A;  2ZAJ A;  1EG3 A;  3ODK A;  3M85 A;  1ZCN A;  2DJY A;  2M8J A;  2RE3 A;  2XP8 A;  2ZQU A;  2MDI A;  3L4H A;  2F21 A;  1O6W A;  2JX8 A;  2YSF A;  2ZQT A;  3KAF A;  3CNG A;  3NTP A;  2ZR4 A;  2XPB A;  3KCE A;  3KAI A;  1TK7 A;  2EZ5 W;  1YW5 A;  1K9R A;  2JXW A;  2L4J A;  2JV4 A;  3KAG A;  1F8A B;  2DK7 A;  4U84 A;  4U85 A;  2ZQS A;  3TC5 A;  2Q5A A;  2YSH A;  2JMF A;  2ZR6 A;  2BA1 A;  1NMV A;  3KAH A;  2XP4 A;  2ZQV A;  1JMQ A;  2ZR5 A;  2XPA A;  5CQ2 A;  2DMV A;  1EG4 A;  2XP6 A; 
#chains in the Genus database with same CATH topology
 2KXQ A;  4A0T A;  3MQG A;  2XP7 A;  4REX A;  1WR7 A;  4QIB A;  2E45 A;  2ITK A;  3MQH A;  2M8I A;  4U86 A;  3OOB A;  1PIN A;  3TDB A;  4E5R A;  2LAJ A;  3LE4 A;  3MCB A;  3FSC A;  2DK1 A;  2OWO A;  2WAE A;  2YSG A;  1WMV A;  2WAD A;  3M7N A;  3TCZ A;  3WH0 A;  2XP3 A;  2YSI A;  1RP5 A;  3KAB A;  2M3O W;  2YSB A;  5E62 A;  5AHT A;  2DWV A;  2XP5 A;  5E64 A;  2XP9 A;  1I5H W;  2QRV A;  3KAD A;  3PQH A;  1K9Q A;  2ZAJ A;  1EG3 A;  3ODK A;  3LKX B;  3M85 A;  1ZCN A;  2DJY A;  2M8J A;  2RE3 A;  2XP8 A;  2ZQU A;  3FSB A;  2MDI A;  1FLC A;  5U47 A;  3L4H A;  2F21 A;  1O6W A;  2JX8 A;  2YSF A;  2ZQT A;  3KAF A;  4GLX A;  3CNG A;  3NTP A;  2ZR4 A;  2XPB A;  3KCE A;  2Y8N B;  3KAI A;  1TK7 A;  2YAJ B;  2EZ5 W;  1YW5 A;  1K9R A;  2JXW A;  2L4J A;  2JV4 A;  3KAG A;  1F8A B;  2DK7 A;  3LKX A;  4U84 A;  5E66 A;  4U85 A;  1TR8 A;  2ZQS A;  5E65 A;  3TC5 A;  3MCB B;  2Q5A A;  2YSH A;  2JMF A;  4A0U A;  2ZR6 A;  2BA1 A;  1NMV A;  3KAH A;  2XP4 A;  2ZQV A;  1JMQ A;  2ZR5 A;  3FS8 A;  5E5W A;  2XPA A;  5CQ2 A;  2DMV A;  1EG4 A;  2XP6 A; 
#chains in the Genus database with same CATH homology
 2KXQ A;  4A0T A;  3MQG A;  2XP7 A;  4REX A;  1WR7 A;  4QIB A;  2E45 A;  2ITK A;  3MQH A;  2M8I A;  4U86 A;  3OOB A;  1PIN A;  3TDB A;  4E5R A;  2LAJ A;  3LE4 A;  3MCB A;  3FSC A;  2DK1 A;  2OWO A;  2WAE A;  2YSG A;  1WMV A;  2WAD A;  3M7N A;  3TCZ A;  3WH0 A;  2XP3 A;  2YSI A;  1RP5 A;  3KAB A;  2M3O W;  2YSB A;  5E62 A;  5AHT A;  2DWV A;  2XP5 A;  5E64 A;  2XP9 A;  1I5H W;  2QRV A;  3KAD A;  3PQH A;  1K9Q A;  2ZAJ A;  1EG3 A;  3ODK A;  3LKX B;  3M85 A;  1ZCN A;  2DJY A;  2M8J A;  2RE3 A;  2XP8 A;  2ZQU A;  3FSB A;  2MDI A;  1FLC A;  5U47 A;  3L4H A;  2F21 A;  1O6W A;  2JX8 A;  2YSF A;  2ZQT A;  3KAF A;  4GLX A;  3CNG A;  3NTP A;  2ZR4 A;  2XPB A;  3KCE A;  2Y8N B;  3KAI A;  1TK7 A;  2YAJ B;  2EZ5 W;  1YW5 A;  1K9R A;  2JXW A;  2L4J A;  2JV4 A;  3KAG A;  1F8A B;  2DK7 A;  3LKX A;  4U84 A;  5E66 A;  4U85 A;  1TR8 A;  2ZQS A;  5E65 A;  3TC5 A;  3MCB B;  2Q5A A;  2YSH A;  2JMF A;  4A0U A;  2ZR6 A;  2BA1 A;  1NMV A;  3KAH A;  2XP4 A;  2ZQV A;  1JMQ A;  2ZR5 A;  3FS8 A;  5E5W A;  2XPA A;  5CQ2 A;  2DMV A;  1EG4 A;  2XP6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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