2M8JA

Structure of pin1 ww domain phospho-mimic s16e
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
43
structure length
43
Chain Sequence
GLEHMADEEKLPPGWEKRMERSSGRVYYFNHITNASQWERPSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
publication title Molecular crowding drives active Pin1 into nonspecific complexes with endogenous proteins prior to substrate recognition.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Isomerase
total genus 3
structure length 43
sequence length 43
ec nomenclature ec 5.2.1.8: Peptidylprolyl isomerase.
pdb deposition date 2013-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2m8jA01
2JMFA 4U84A 3LE4A 2YSGA 2DK1A 2XP3A 2LAJA 2EZ5W 2JV4A 2ZR6A 2JX8A 2ITKA 2XP8A 2ZQUA 4REXA 1JMQA 1WMVA 3TDBA 1WR7A 3KAFA 5AHTA 2YSIA 3WH0A 2XP6A 2E45A 1TK7A 3KAHA 3M7NA 2JXWA 2BA1A 1NMVA 2XP5A 3TC5A 2DMVA 2L4JA 3M85A 1F8AB 3KCEA 2ZR4A 3ODKA 1K9QA 2XP4A 2MDIA 4U86A 1PINA 2XP9A 2ZQVA 3KADA 1YW5A 2M8JA 3KAGA 3CNGA 2YSFA 1EG4A 2XPBA 2ZR5A 5CQ2A 1O6WA 2DWVA 2DJYA 3OOBA 3L4HA 2ZQTA 2F21A 2XP7A 1ZCNA 2KXQA 2XPAA 3TCZA 2M3OW 2ZQSA 1EG3A 2RE3A 2DK7A 2M8IA 4U85A 1I5HW 4E5RA 2Q5AA 3KAIA 1K9RA 4QIBA 2YSHA 2YSBA 3NTPA 2ZAJA 3KABA
chains in the Genus database with same CATH superfamily
2JMFA 4U84A 3LE4A 2YSGA 2DK1A 2XP3A 2LAJA 2EZ5W 2JV4A 2ZR6A 2JX8A 2ITKA 2XP8A 2ZQUA 4REXA 1JMQA 1WMVA 3TDBA 1WR7A 3KAFA 5AHTA 2YSIA 2YAJB 3WH0A 5E64A 2XP6A 3FS8A 2E45A 1TK7A 3KAHA 2WAEA 3M7NA 2JXWA 2BA1A 1NMVA 2XP5A 3LKXB 3TC5A 2DMVA 2L4JA 3M85A 2Y8NB 1F8AB 3KCEA 2ZR4A 3ODKA 1K9QA 1TR8A 2XP4A 2MDIA 3FSCA 4GLXA 2QRVA 4U86A 1PINA 2XP9A 2ZQVA 3MQHA 3KADA 1YW5A 2M8JA 3KAGA 3CNGA 2YSFA 5E66A 1EG4A 2XPBA 2ZR5A 5CQ2A 1O6WA 2DWVA 2DJYA 3OOBA 2WADA 3FSBA 3L4HA 3PQHA 2ZQTA 2F21A 2XP7A 3LKXA 1ZCNA 3MCBB 2OWOA 2KXQA 2XPAA 3TCZA 1RP5A 5E65A 2M3OW 4A0TA 2ZQSA 3MCBA 5E62A 1FLCA 1EG3A 2RE3A 2DK7A 2M8IA 4U85A 1I5HW 4E5RA 2Q5AA 3KAIA 1K9RA 4A0UA 4QIBA 5E5WA 2YSHA 3MQGA 2YSBA 3NTPA 2ZAJA 5U47A 3KABA
chains in the Genus database with same CATH topology
2JMFA 4U84A 3LE4A 2YSGA 2DK1A 2XP3A 2LAJA 2EZ5W 2JV4A 2ZR6A 2JX8A 2ITKA 2XP8A 2ZQUA 4REXA 1JMQA 1WMVA 3TDBA 1WR7A 3KAFA 5AHTA 2YSIA 2YAJB 3WH0A 5E64A 2XP6A 3FS8A 2E45A 1TK7A 3KAHA 2WAEA 3M7NA 2JXWA 2BA1A 1NMVA 2XP5A 3LKXB 3TC5A 2DMVA 2L4JA 3M85A 2Y8NB 1F8AB 3KCEA 2ZR4A 3ODKA 1K9QA 1TR8A 2XP4A 2MDIA 3FSCA 4GLXA 2QRVA 4U86A 1PINA 2XP9A 2ZQVA 3MQHA 3KADA 1YW5A 2M8JA 3KAGA 3CNGA 2YSFA 5E66A 1EG4A 2XPBA 2ZR5A 5CQ2A 1O6WA 2DWVA 2DJYA 3OOBA 2WADA 3FSBA 3L4HA 3PQHA 2ZQTA 2F21A 2XP7A 3LKXA 1ZCNA 3MCBB 2OWOA 2KXQA 2XPAA 3TCZA 1RP5A 5E65A 2M3OW 4A0TA 2ZQSA 3MCBA 5E62A 1FLCA 1EG3A 2RE3A 2DK7A 2M8IA 4U85A 1I5HW 4E5RA 2Q5AA 3KAIA 1K9RA 4A0UA 4QIBA 5E5WA 2YSHA 3MQGA 2YSBA 3NTPA 2ZAJA 5U47A 3KABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JMF A;  4U84 A;  3LE4 A;  2YSG A;  2DK1 A;  2XP3 A;  2LAJ A;  2EZ5 W;  2JV4 A;  2ZR6 A;  2JX8 A;  2ITK A;  2XP8 A;  2ZQU A;  4REX A;  1JMQ A;  1WMV A;  3TDB A;  1WR7 A;  3KAF A;  5AHT A;  2YSI A;  3WH0 A;  2XP6 A;  2E45 A;  1TK7 A;  3KAH A;  3M7N A;  2JXW A;  2BA1 A;  1NMV A;  2XP5 A;  3TC5 A;  2DMV A;  2L4J A;  3M85 A;  1F8A B;  3KCE A;  2ZR4 A;  3ODK A;  1K9Q A;  2XP4 A;  2MDI A;  4U86 A;  1PIN A;  2XP9 A;  2ZQV A;  3KAD A;  1YW5 A;  2M8J A;  3KAG A;  3CNG A;  2YSF A;  1EG4 A;  2XPB A;  2ZR5 A;  5CQ2 A;  1O6W A;  2DWV A;  2DJY A;  3OOB A;  3L4H A;  2ZQT A;  2F21 A;  2XP7 A;  1ZCN A;  2KXQ A;  2XPA A;  3TCZ A;  2M3O W;  2ZQS A;  1EG3 A;  2RE3 A;  2DK7 A;  2M8I A;  4U85 A;  1I5H W;  4E5R A;  2Q5A A;  3KAI A;  1K9R A;  4QIB A;  2YSH A;  2YSB A;  3NTP A;  2ZAJ A;  3KAB A; 
#chains in the Genus database with same CATH topology
 2JMF A;  4U84 A;  3LE4 A;  2YSG A;  2DK1 A;  2XP3 A;  2LAJ A;  2EZ5 W;  2JV4 A;  2ZR6 A;  2JX8 A;  2ITK A;  2XP8 A;  2ZQU A;  4REX A;  1JMQ A;  1WMV A;  3TDB A;  1WR7 A;  3KAF A;  5AHT A;  2YSI A;  2YAJ B;  3WH0 A;  5E64 A;  2XP6 A;  3FS8 A;  2E45 A;  1TK7 A;  3KAH A;  2WAE A;  3M7N A;  2JXW A;  2BA1 A;  1NMV A;  2XP5 A;  3LKX B;  3TC5 A;  2DMV A;  2L4J A;  3M85 A;  2Y8N B;  1F8A B;  3KCE A;  2ZR4 A;  3ODK A;  1K9Q A;  1TR8 A;  2XP4 A;  2MDI A;  3FSC A;  4GLX A;  2QRV A;  4U86 A;  1PIN A;  2XP9 A;  2ZQV A;  3MQH A;  3KAD A;  1YW5 A;  2M8J A;  3KAG A;  3CNG A;  2YSF A;  5E66 A;  1EG4 A;  2XPB A;  2ZR5 A;  5CQ2 A;  1O6W A;  2DWV A;  2DJY A;  3OOB A;  2WAD A;  3FSB A;  3L4H A;  3PQH A;  2ZQT A;  2F21 A;  2XP7 A;  3LKX A;  1ZCN A;  3MCB B;  2OWO A;  2KXQ A;  2XPA A;  3TCZ A;  1RP5 A;  5E65 A;  2M3O W;  4A0T A;  2ZQS A;  3MCB A;  5E62 A;  1FLC A;  1EG3 A;  2RE3 A;  2DK7 A;  2M8I A;  4U85 A;  1I5H W;  4E5R A;  2Q5A A;  3KAI A;  1K9R A;  4A0U A;  4QIB A;  5E5W A;  2YSH A;  3MQG A;  2YSB A;  3NTP A;  2ZAJ A;  5U47 A;  3KAB A; 
#chains in the Genus database with same CATH homology
 2JMF A;  4U84 A;  3LE4 A;  2YSG A;  2DK1 A;  2XP3 A;  2LAJ A;  2EZ5 W;  2JV4 A;  2ZR6 A;  2JX8 A;  2ITK A;  2XP8 A;  2ZQU A;  4REX A;  1JMQ A;  1WMV A;  3TDB A;  1WR7 A;  3KAF A;  5AHT A;  2YSI A;  2YAJ B;  3WH0 A;  5E64 A;  2XP6 A;  3FS8 A;  2E45 A;  1TK7 A;  3KAH A;  2WAE A;  3M7N A;  2JXW A;  2BA1 A;  1NMV A;  2XP5 A;  3LKX B;  3TC5 A;  2DMV A;  2L4J A;  3M85 A;  2Y8N B;  1F8A B;  3KCE A;  2ZR4 A;  3ODK A;  1K9Q A;  1TR8 A;  2XP4 A;  2MDI A;  3FSC A;  4GLX A;  2QRV A;  4U86 A;  1PIN A;  2XP9 A;  2ZQV A;  3MQH A;  3KAD A;  1YW5 A;  2M8J A;  3KAG A;  3CNG A;  2YSF A;  5E66 A;  1EG4 A;  2XPB A;  2ZR5 A;  5CQ2 A;  1O6W A;  2DWV A;  2DJY A;  3OOB A;  2WAD A;  3FSB A;  3L4H A;  3PQH A;  2ZQT A;  2F21 A;  2XP7 A;  3LKX A;  1ZCN A;  3MCB B;  2OWO A;  2KXQ A;  2XPA A;  3TCZ A;  1RP5 A;  5E65 A;  2M3O W;  4A0T A;  2ZQS A;  3MCB A;  5E62 A;  1FLC A;  1EG3 A;  2RE3 A;  2DK7 A;  2M8I A;  4U85 A;  1I5H W;  4E5R A;  2Q5A A;  3KAI A;  1K9R A;  4A0U A;  4QIB A;  5E5W A;  2YSH A;  3MQG A;  2YSB A;  3NTP A;  2ZAJ A;  5U47 A;  3KAB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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