2M8JA

Structure of pin1 ww domain phospho-mimic s16e
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
43
structure length
43
Chain Sequence
GLEHMADEEKLPPGWEKRMERSSGRVYYFNHITNASQWERPSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
source organism Homo sapiens
publication title Molecular crowding drives active Pin1 into nonspecific complexes with endogenous proteins prior to substrate recognition.
pubmed doi rcsb
molecule keywords Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
total genus 3
structure length 43
sequence length 43
ec nomenclature ec 5.2.1.8: Peptidylprolyl isomerase.
pdb deposition date 2013-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2m8jA01
1EG3A 2JV4A 1YW5A 2KXQA 2DK1A 3OOBA 1PINA 2ZAJA 3KAHA 3WH0A 2XP9A 1JMQA 4E5RA 3ODKA 2M8IA 3LE4A 1K9RA 1WR7A 2DMVA 2JMFA 2M3OW 2XP8A 2XPAA 2BA1A 2F21A 2XPBA 2EZ5W 3CNGA 1ZCNA 3KAGA 2YSBA 2XP6A 1I5HW 2ZR5A 2ZQTA 1EG4A 2JX8A 1F8AB 3L4HA 3TCZA 2ZQSA 1K9QA 2JXWA 2XP4A 3NTPA 4U86A 2DJYA 2LAJA 3KAIA 4U85A 5AHTA 2M8JA 1TK7A 1WMVA 3TC5A 5CQ2A 4REXA 1O6WA 2XP5A 3KABA 2MDIA 2DWVA 2DK7A 2YSIA 2ZR4A 2ITKA 3KAFA 3KCEA 2YSFA 3M7NA 2ZR6A 2E45A 3M85A 2YSHA 1NMVA 2Q5AA 2RE3A 2YSGA 2L4JA 2XP3A 2ZQUA 4QIBA 3TDBA 3KADA 2ZQVA 4U84A 2XP7A
chains in the Genus database with same CATH superfamily
1EG3A 2JV4A 1YW5A 2KXQA 2DK1A 3OOBA 1PINA 2ZAJA 3FSBA 3KAHA 3WH0A 2XP9A 1JMQA 4E5RA 3ODKA 2M8IA 1TR8A 3LE4A 5E62A 1K9RA 1WR7A 5E64A 2DMVA 2JMFA 2M3OW 2XP8A 2XPAA 3MCBB 2BA1A 2F21A 2XPBA 3FS8A 2EZ5W 3CNGA 1ZCNA 3KAGA 4GLXA 2YSBA 2WAEA 2OWOA 2XP6A 5E66A 1I5HW 2ZR5A 2ZQTA 4A0TA 1EG4A 2JX8A 1F8AB 3L4HA 3TCZA 2ZQSA 1K9QA 3MQGA 2JXWA 2XP4A 1FLCA 3MCBA 3NTPA 4U86A 2DJYA 2LAJA 3KAIA 4U85A 5AHTA 2M8JA 1TK7A 1WMVA 3TC5A 5CQ2A 3PQHA 4REXA 1O6WA 2XP5A 3KABA 2MDIA 2DWVA 2DK7A 2YSIA 2WADA 2ZR4A 2YAJB 2ITKA 3KAFA 3KCEA 2YSFA 3M7NA 2ZR6A 5U47A 2E45A 3M85A 2YSHA 3MQHA 1NMVA 2Q5AA 2QRVA 2RE3A 2YSGA 2Y8NB 2L4JA 1RP5A 2XP3A 2ZQUA 4QIBA 3TDBA 3FSCA 3KADA 3LKXB 3LKXA 5E5WA 5E65A 2ZQVA 4U84A 2XP7A 4A0UA
chains in the Genus database with same CATH topology
1EG3A 2JV4A 1YW5A 2KXQA 2DK1A 3OOBA 1PINA 2ZAJA 3FSBA 3KAHA 3WH0A 2XP9A 1JMQA 4E5RA 3ODKA 2M8IA 1TR8A 3LE4A 5E62A 1K9RA 1WR7A 5E64A 2DMVA 2JMFA 2M3OW 2XP8A 2XPAA 3MCBB 2BA1A 2F21A 2XPBA 3FS8A 2EZ5W 3CNGA 1ZCNA 3KAGA 4GLXA 2YSBA 2WAEA 2OWOA 2XP6A 5E66A 1I5HW 2ZR5A 2ZQTA 4A0TA 1EG4A 2JX8A 1F8AB 3L4HA 3TCZA 2ZQSA 1K9QA 3MQGA 2JXWA 2XP4A 1FLCA 3MCBA 3NTPA 4U86A 2DJYA 2LAJA 3KAIA 4U85A 5AHTA 2M8JA 1TK7A 1WMVA 3TC5A 5CQ2A 3PQHA 4REXA 1O6WA 2XP5A 3KABA 2MDIA 2DWVA 2DK7A 2YSIA 2WADA 2ZR4A 2YAJB 2ITKA 3KAFA 3KCEA 2YSFA 3M7NA 2ZR6A 5U47A 2E45A 3M85A 2YSHA 3MQHA 1NMVA 2Q5AA 2QRVA 2RE3A 2YSGA 2Y8NB 2L4JA 1RP5A 2XP3A 2ZQUA 4QIBA 3TDBA 3FSCA 3KADA 3LKXB 3LKXA 5E5WA 5E65A 2ZQVA 4U84A 2XP7A 4A0UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EG3 A;  2JV4 A;  1YW5 A;  2KXQ A;  2DK1 A;  3OOB A;  1PIN A;  2ZAJ A;  3KAH A;  3WH0 A;  2XP9 A;  1JMQ A;  4E5R A;  3ODK A;  2M8I A;  3LE4 A;  1K9R A;  1WR7 A;  2DMV A;  2JMF A;  2M3O W;  2XP8 A;  2XPA A;  2BA1 A;  2F21 A;  2XPB A;  2EZ5 W;  3CNG A;  1ZCN A;  3KAG A;  2YSB A;  2XP6 A;  1I5H W;  2ZR5 A;  2ZQT A;  1EG4 A;  2JX8 A;  1F8A B;  3L4H A;  3TCZ A;  2ZQS A;  1K9Q A;  2JXW A;  2XP4 A;  3NTP A;  4U86 A;  2DJY A;  2LAJ A;  3KAI A;  4U85 A;  5AHT A;  2M8J A;  1TK7 A;  1WMV A;  3TC5 A;  5CQ2 A;  4REX A;  1O6W A;  2XP5 A;  3KAB A;  2MDI A;  2DWV A;  2DK7 A;  2YSI A;  2ZR4 A;  2ITK A;  3KAF A;  3KCE A;  2YSF A;  3M7N A;  2ZR6 A;  2E45 A;  3M85 A;  2YSH A;  1NMV A;  2Q5A A;  2RE3 A;  2YSG A;  2L4J A;  2XP3 A;  2ZQU A;  4QIB A;  3TDB A;  3KAD A;  2ZQV A;  4U84 A;  2XP7 A; 
#chains in the Genus database with same CATH topology
 1EG3 A;  2JV4 A;  1YW5 A;  2KXQ A;  2DK1 A;  3OOB A;  1PIN A;  2ZAJ A;  3FSB A;  3KAH A;  3WH0 A;  2XP9 A;  1JMQ A;  4E5R A;  3ODK A;  2M8I A;  1TR8 A;  3LE4 A;  5E62 A;  1K9R A;  1WR7 A;  5E64 A;  2DMV A;  2JMF A;  2M3O W;  2XP8 A;  2XPA A;  3MCB B;  2BA1 A;  2F21 A;  2XPB A;  3FS8 A;  2EZ5 W;  3CNG A;  1ZCN A;  3KAG A;  4GLX A;  2YSB A;  2WAE A;  2OWO A;  2XP6 A;  5E66 A;  1I5H W;  2ZR5 A;  2ZQT A;  4A0T A;  1EG4 A;  2JX8 A;  1F8A B;  3L4H A;  3TCZ A;  2ZQS A;  1K9Q A;  3MQG A;  2JXW A;  2XP4 A;  1FLC A;  3MCB A;  3NTP A;  4U86 A;  2DJY A;  2LAJ A;  3KAI A;  4U85 A;  5AHT A;  2M8J A;  1TK7 A;  1WMV A;  3TC5 A;  5CQ2 A;  3PQH A;  4REX A;  1O6W A;  2XP5 A;  3KAB A;  2MDI A;  2DWV A;  2DK7 A;  2YSI A;  2WAD A;  2ZR4 A;  2YAJ B;  2ITK A;  3KAF A;  3KCE A;  2YSF A;  3M7N A;  2ZR6 A;  5U47 A;  2E45 A;  3M85 A;  2YSH A;  3MQH A;  1NMV A;  2Q5A A;  2QRV A;  2RE3 A;  2YSG A;  2Y8N B;  2L4J A;  1RP5 A;  2XP3 A;  2ZQU A;  4QIB A;  3TDB A;  3FSC A;  3KAD A;  3LKX B;  3LKX A;  5E5W A;  5E65 A;  2ZQV A;  4U84 A;  2XP7 A;  4A0U A; 
#chains in the Genus database with same CATH homology
 1EG3 A;  2JV4 A;  1YW5 A;  2KXQ A;  2DK1 A;  3OOB A;  1PIN A;  2ZAJ A;  3FSB A;  3KAH A;  3WH0 A;  2XP9 A;  1JMQ A;  4E5R A;  3ODK A;  2M8I A;  1TR8 A;  3LE4 A;  5E62 A;  1K9R A;  1WR7 A;  5E64 A;  2DMV A;  2JMF A;  2M3O W;  2XP8 A;  2XPA A;  3MCB B;  2BA1 A;  2F21 A;  2XPB A;  3FS8 A;  2EZ5 W;  3CNG A;  1ZCN A;  3KAG A;  4GLX A;  2YSB A;  2WAE A;  2OWO A;  2XP6 A;  5E66 A;  1I5H W;  2ZR5 A;  2ZQT A;  4A0T A;  1EG4 A;  2JX8 A;  1F8A B;  3L4H A;  3TCZ A;  2ZQS A;  1K9Q A;  3MQG A;  2JXW A;  2XP4 A;  1FLC A;  3MCB A;  3NTP A;  4U86 A;  2DJY A;  2LAJ A;  3KAI A;  4U85 A;  5AHT A;  2M8J A;  1TK7 A;  1WMV A;  3TC5 A;  5CQ2 A;  3PQH A;  4REX A;  1O6W A;  2XP5 A;  3KAB A;  2MDI A;  2DWV A;  2DK7 A;  2YSI A;  2WAD A;  2ZR4 A;  2YAJ B;  2ITK A;  3KAF A;  3KCE A;  2YSF A;  3M7N A;  2ZR6 A;  5U47 A;  2E45 A;  3M85 A;  2YSH A;  3MQH A;  1NMV A;  2Q5A A;  2QRV A;  2RE3 A;  2YSG A;  2Y8N B;  2L4J A;  1RP5 A;  2XP3 A;  2ZQU A;  4QIB A;  3TDB A;  3FSC A;  3KAD A;  3LKX B;  3LKX A;  5E5W A;  5E65 A;  2ZQV A;  4U84 A;  2XP7 A;  4A0U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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