3L4HA

Helical box domain and second ww domain of the human e3 ubiquitin-protein ligase hecw1
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
109
structure length
109
Chain Sequence
LLLQSPAVKFITNPEFFTVLHANYSAYRVFTSSTCLKHMILKVRRDARNFERYQHNRDLVNFINMFADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
source organism Homo sapiens
publication title The tandem helical box and second WW domains of human HECW1
rcsb
molecule keywords E3 ubiquitin-protein ligase HECW1
total genus 27
structure length 109
sequence length 109
ec nomenclature ec 2.3.2.26: HECT-type E3 ubiquitin transferase.
pdb deposition date 2009-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18436 HECW1_helix Helical box domain of E3 ubiquitin-protein ligase HECW1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 3l4hA01
1K9QA 3OOBA 2YSGA 1YW5A 3KCEA 2XP6A 5AHTA 2ZQTA 3TC5A 1EG4A 1O6WA 2YSIA 2XPBA 2XP9A 2L4JA 3KABA 2XP5A 2ZR5A 2M3OW 3CNGA 3TDBA 2BA1A 2F21A 3KAGA 3M85A 3LE4A 2ZQUA 1EG3A 3NTPA 2DJYA 2XP8A 1JMQA 2M8IA 1F8AB 2MDIA 2XP4A 2ITKA 3WH0A 2YSFA 3KAHA 2Q5AA 2DWVA 2JMFA 2YSBA 4E5RA 1I5HW 1PINA 4U85A 2XP3A 1WR7A 2ZR6A 2DMVA 4REXA 2YSHA 2DK1A 2EZ5W 2KXQA 1ZCNA 3KAFA 1TK7A 2JXWA 5CQ2A 1WMVA 1NMVA 2ZQSA 2E45A 3KADA 2DK7A 4U86A 3L4HA 2LAJA 3M7NA 3ODKA 2JX8A 2JV4A 3TCZA 2RE3A 2XP7A 2M8JA 1K9RA 3KAIA 2ZAJA 4U84A 2XPAA 4QIBA 2ZQVA 2ZR4A
chains in the Genus database with same CATH superfamily
1K9QA 3OOBA 2YSGA 1YW5A 2Y8NB 2WADA 3MCBB 3KCEA 2XP6A 5AHTA 2ZQTA 3TC5A 1EG4A 1O6WA 2YSIA 2XPBA 2XP9A 2L4JA 3KABA 2XP5A 2ZR5A 2M3OW 3FSCA 3CNGA 3TDBA 1FLCA 2BA1A 2F21A 3KAGA 3M85A 3LE4A 2ZQUA 1EG3A 3NTPA 3PQHA 2DJYA 2QRVA 2WAEA 4GLXA 2XP8A 1JMQA 3MQGA 2M8IA 1F8AB 5E65A 5E62A 2MDIA 2XP4A 2ITKA 5E64A 3WH0A 2YSFA 3KAHA 2Q5AA 4A0TA 5E5WA 1RP5A 2DWVA 2JMFA 2YSBA 4E5RA 1I5HW 1PINA 4U85A 2XP3A 3LKXA 1WR7A 2ZR6A 2DMVA 4REXA 2YSHA 2DK1A 2EZ5W 2KXQA 1ZCNA 3MQHA 3KAFA 1TK7A 2JXWA 5CQ2A 1WMVA 1NMVA 2ZQSA 2E45A 3KADA 2DK7A 3FS8A 3L4HA 4U86A 2LAJA 3M7NA 3MCBA 3LKXB 4A0UA 3ODKA 2JX8A 2JV4A 3TCZA 2RE3A 2XP7A 2M8JA 1K9RA 3FSBA 3KAIA 2ZAJA 1TR8A 5U47A 4U84A 2XPAA 4QIBA 2YAJB 2ZQVA 5E66A 2ZR4A 2OWOA
chains in the Genus database with same CATH topology
1K9QA 3OOBA 2YSGA 1YW5A 2Y8NB 2WADA 3MCBB 3KCEA 2XP6A 5AHTA 2ZQTA 3TC5A 1EG4A 1O6WA 2YSIA 2XPBA 2XP9A 2L4JA 3KABA 2XP5A 2ZR5A 2M3OW 3FSCA 3CNGA 3TDBA 1FLCA 2BA1A 2F21A 3KAGA 3M85A 3LE4A 2ZQUA 1EG3A 3NTPA 3PQHA 2DJYA 2QRVA 2WAEA 4GLXA 2XP8A 1JMQA 3MQGA 2M8IA 1F8AB 5E65A 5E62A 2MDIA 2XP4A 2ITKA 5E64A 3WH0A 2YSFA 3KAHA 2Q5AA 4A0TA 5E5WA 1RP5A 2DWVA 2JMFA 2YSBA 4E5RA 1I5HW 1PINA 4U85A 2XP3A 3LKXA 1WR7A 2ZR6A 2DMVA 4REXA 2YSHA 2DK1A 2EZ5W 2KXQA 1ZCNA 3MQHA 3KAFA 1TK7A 2JXWA 5CQ2A 1WMVA 1NMVA 2ZQSA 2E45A 3KADA 2DK7A 3FS8A 3L4HA 4U86A 2LAJA 3M7NA 3MCBA 3LKXB 4A0UA 3ODKA 2JX8A 2JV4A 3TCZA 2RE3A 2XP7A 2M8JA 1K9RA 3FSBA 3KAIA 2ZAJA 1TR8A 5U47A 4U84A 2XPAA 4QIBA 2YAJB 2ZQVA 5E66A 2ZR4A 2OWOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K9Q A;  3OOB A;  2YSG A;  1YW5 A;  3KCE A;  2XP6 A;  5AHT A;  2ZQT A;  3TC5 A;  1EG4 A;  1O6W A;  2YSI A;  2XPB A;  2XP9 A;  2L4J A;  3KAB A;  2XP5 A;  2ZR5 A;  2M3O W;  3CNG A;  3TDB A;  2BA1 A;  2F21 A;  3KAG A;  3M85 A;  3LE4 A;  2ZQU A;  1EG3 A;  3NTP A;  2DJY A;  2XP8 A;  1JMQ A;  2M8I A;  1F8A B;  2MDI A;  2XP4 A;  2ITK A;  3WH0 A;  2YSF A;  3KAH A;  2Q5A A;  2DWV A;  2JMF A;  2YSB A;  4E5R A;  1I5H W;  1PIN A;  4U85 A;  2XP3 A;  1WR7 A;  2ZR6 A;  2DMV A;  4REX A;  2YSH A;  2DK1 A;  2EZ5 W;  2KXQ A;  1ZCN A;  3KAF A;  1TK7 A;  2JXW A;  5CQ2 A;  1WMV A;  1NMV A;  2ZQS A;  2E45 A;  3KAD A;  2DK7 A;  4U86 A;  3L4H A;  2LAJ A;  3M7N A;  3ODK A;  2JX8 A;  2JV4 A;  3TCZ A;  2RE3 A;  2XP7 A;  2M8J A;  1K9R A;  3KAI A;  2ZAJ A;  4U84 A;  2XPA A;  4QIB A;  2ZQV A;  2ZR4 A; 
#chains in the Genus database with same CATH topology
 1K9Q A;  3OOB A;  2YSG A;  1YW5 A;  2Y8N B;  2WAD A;  3MCB B;  3KCE A;  2XP6 A;  5AHT A;  2ZQT A;  3TC5 A;  1EG4 A;  1O6W A;  2YSI A;  2XPB A;  2XP9 A;  2L4J A;  3KAB A;  2XP5 A;  2ZR5 A;  2M3O W;  3FSC A;  3CNG A;  3TDB A;  1FLC A;  2BA1 A;  2F21 A;  3KAG A;  3M85 A;  3LE4 A;  2ZQU A;  1EG3 A;  3NTP A;  3PQH A;  2DJY A;  2QRV A;  2WAE A;  4GLX A;  2XP8 A;  1JMQ A;  3MQG A;  2M8I A;  1F8A B;  5E65 A;  5E62 A;  2MDI A;  2XP4 A;  2ITK A;  5E64 A;  3WH0 A;  2YSF A;  3KAH A;  2Q5A A;  4A0T A;  5E5W A;  1RP5 A;  2DWV A;  2JMF A;  2YSB A;  4E5R A;  1I5H W;  1PIN A;  4U85 A;  2XP3 A;  3LKX A;  1WR7 A;  2ZR6 A;  2DMV A;  4REX A;  2YSH A;  2DK1 A;  2EZ5 W;  2KXQ A;  1ZCN A;  3MQH A;  3KAF A;  1TK7 A;  2JXW A;  5CQ2 A;  1WMV A;  1NMV A;  2ZQS A;  2E45 A;  3KAD A;  2DK7 A;  3FS8 A;  3L4H A;  4U86 A;  2LAJ A;  3M7N A;  3MCB A;  3LKX B;  4A0U A;  3ODK A;  2JX8 A;  2JV4 A;  3TCZ A;  2RE3 A;  2XP7 A;  2M8J A;  1K9R A;  3FSB A;  3KAI A;  2ZAJ A;  1TR8 A;  5U47 A;  4U84 A;  2XPA A;  4QIB A;  2YAJ B;  2ZQV A;  5E66 A;  2ZR4 A;  2OWO A; 
#chains in the Genus database with same CATH homology
 1K9Q A;  3OOB A;  2YSG A;  1YW5 A;  2Y8N B;  2WAD A;  3MCB B;  3KCE A;  2XP6 A;  5AHT A;  2ZQT A;  3TC5 A;  1EG4 A;  1O6W A;  2YSI A;  2XPB A;  2XP9 A;  2L4J A;  3KAB A;  2XP5 A;  2ZR5 A;  2M3O W;  3FSC A;  3CNG A;  3TDB A;  1FLC A;  2BA1 A;  2F21 A;  3KAG A;  3M85 A;  3LE4 A;  2ZQU A;  1EG3 A;  3NTP A;  3PQH A;  2DJY A;  2QRV A;  2WAE A;  4GLX A;  2XP8 A;  1JMQ A;  3MQG A;  2M8I A;  1F8A B;  5E65 A;  5E62 A;  2MDI A;  2XP4 A;  2ITK A;  5E64 A;  3WH0 A;  2YSF A;  3KAH A;  2Q5A A;  4A0T A;  5E5W A;  1RP5 A;  2DWV A;  2JMF A;  2YSB A;  4E5R A;  1I5H W;  1PIN A;  4U85 A;  2XP3 A;  3LKX A;  1WR7 A;  2ZR6 A;  2DMV A;  4REX A;  2YSH A;  2DK1 A;  2EZ5 W;  2KXQ A;  1ZCN A;  3MQH A;  3KAF A;  1TK7 A;  2JXW A;  5CQ2 A;  1WMV A;  1NMV A;  2ZQS A;  2E45 A;  3KAD A;  2DK7 A;  3FS8 A;  3L4H A;  4U86 A;  2LAJ A;  3M7N A;  3MCB A;  3LKX B;  4A0U A;  3ODK A;  2JX8 A;  2JV4 A;  3TCZ A;  2RE3 A;  2XP7 A;  2M8J A;  1K9R A;  3FSB A;  3KAI A;  2ZAJ A;  1TR8 A;  5U47 A;  4U84 A;  2XPA A;  4QIB A;  2YAJ B;  2ZQV A;  5E66 A;  2ZR4 A;  2OWO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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