2JV4A

Structure characterisation of pina ww domain and comparison with other group iv ww domains, pin1 and ess1
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
53
structure length
53
Chain Sequence
SMVNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMYMATYH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
source organism Emericella nidulans
publication title Structural characterisation of PinA WW domain and a comparison with other Group IV WW domains, Pin1 and Ess1
pubmed doi rcsb
molecule keywords Peptidyl-prolyl cis/trans isomerase
total genus 3
structure length 53
sequence length 53
ec nomenclature ec 5.2.1.8: Peptidylprolyl isomerase.
pdb deposition date 2007-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2jv4A00
5CQ2A 2EZ5W 1K9RA 4QIBA 2DJYA 3M85A 1PINA 3NTPA 3KABA 2L4JA 3TC5A 2JV4A 2YSIA 2ZQTA 2XP4A 3KAIA 4REXA 2JMFA 2JX8A 2ZR6A 1ZCNA 2YSGA 2RE3A 3ODKA 3LE4A 2XP5A 2XP3A 2XP6A 2Q5AA 2YSBA 3CNGA 2LAJA 1WMVA 2M8IA 2E45A 5AHTA 2YSHA 1F8AB 2M8JA 3M7NA 2XPAA 1EG4A 1I5HW 3KADA 2ITKA 3TDBA 1O6WA 2YSFA 2XP7A 2XP9A 2DK7A 3KAGA 4E5RA 2ZQVA 2KXQA 2ZAJA 2ZQSA 3OOBA 1EG3A 2XP8A 2XPBA 3KAHA 3TCZA 3WH0A 3KAFA 2ZR4A 4U86A 2ZQUA 4U85A 2DWVA 2F21A 1NMVA 4U84A 2BA1A 2MDIA 2ZR5A 2DMVA 3L4HA 1YW5A 2JXWA 1K9QA 2DK1A 1JMQA 1WR7A 2M3OW 1TK7A 3KCEA
chains in the Genus database with same CATH superfamily
5CQ2A 4GLXA 2EZ5W 1RP5A 1K9RA 4QIBA 5E65A 2DJYA 3M85A 1PINA 3NTPA 3KABA 3LKXB 2L4JA 3TC5A 2JV4A 5E64A 1TR8A 2YSIA 2ZQTA 2XP4A 2OWOA 3KAIA 4REXA 2JMFA 2JX8A 2ZR6A 1ZCNA 2YSGA 2RE3A 3FSBA 3ODKA 3LE4A 2XP5A 2XP3A 2XP6A 2Q5AA 2YSBA 3CNGA 2LAJA 1WMVA 4A0TA 2M8IA 2E45A 5AHTA 2YSHA 3MCBA 1F8AB 2M8JA 3M7NA 2XPAA 1FLCA 1EG4A 1I5HW 3KADA 2ITKA 3TDBA 1O6WA 4A0UA 2YSFA 2XP7A 2WAEA 5E66A 2YAJB 3FS8A 3PQHA 2XP9A 2DK7A 3KAGA 2Y8NB 4E5RA 2ZQVA 3MQHA 2KXQA 2ZAJA 3LKXA 2ZQSA 3OOBA 1EG3A 5E5WA 2XP8A 2QRVA 2XPBA 5E62A 3KAHA 3TCZA 3WH0A 3KAFA 2ZR4A 4U86A 2ZQUA 4U85A 2DWVA 2WADA 2F21A 1NMVA 4U84A 2BA1A 2MDIA 2ZR5A 3MQGA 3MCBB 2DMVA 3L4HA 5U47A 1YW5A 2JXWA 1K9QA 2DK1A 1JMQA 1WR7A 2M3OW 1TK7A 3KCEA 3FSCA
chains in the Genus database with same CATH topology
5CQ2A 4GLXA 2EZ5W 1RP5A 1K9RA 4QIBA 5E65A 2DJYA 3M85A 1PINA 3NTPA 3KABA 3LKXB 2L4JA 3TC5A 2JV4A 5E64A 1TR8A 2YSIA 2ZQTA 2XP4A 2OWOA 3KAIA 4REXA 2JMFA 2JX8A 2ZR6A 1ZCNA 2YSGA 2RE3A 3FSBA 3ODKA 3LE4A 2XP5A 2XP3A 2XP6A 2Q5AA 2YSBA 3CNGA 2LAJA 1WMVA 4A0TA 2M8IA 2E45A 5AHTA 2YSHA 3MCBA 1F8AB 2M8JA 3M7NA 2XPAA 1FLCA 1EG4A 1I5HW 3KADA 2ITKA 3TDBA 1O6WA 4A0UA 2YSFA 2XP7A 2WAEA 5E66A 2YAJB 3FS8A 3PQHA 2XP9A 2DK7A 3KAGA 2Y8NB 4E5RA 2ZQVA 3MQHA 2KXQA 2ZAJA 3LKXA 2ZQSA 3OOBA 1EG3A 5E5WA 2XP8A 2QRVA 2XPBA 5E62A 3KAHA 3TCZA 3WH0A 3KAFA 2ZR4A 4U86A 2ZQUA 4U85A 2DWVA 2WADA 2F21A 1NMVA 4U84A 2BA1A 2MDIA 2ZR5A 3MQGA 3MCBB 2DMVA 3L4HA 5U47A 1YW5A 2JXWA 1K9QA 2DK1A 1JMQA 1WR7A 2M3OW 1TK7A 3KCEA 3FSCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CQ2 A;  2EZ5 W;  1K9R A;  4QIB A;  2DJY A;  3M85 A;  1PIN A;  3NTP A;  3KAB A;  2L4J A;  3TC5 A;  2JV4 A;  2YSI A;  2ZQT A;  2XP4 A;  3KAI A;  4REX A;  2JMF A;  2JX8 A;  2ZR6 A;  1ZCN A;  2YSG A;  2RE3 A;  3ODK A;  3LE4 A;  2XP5 A;  2XP3 A;  2XP6 A;  2Q5A A;  2YSB A;  3CNG A;  2LAJ A;  1WMV A;  2M8I A;  2E45 A;  5AHT A;  2YSH A;  1F8A B;  2M8J A;  3M7N A;  2XPA A;  1EG4 A;  1I5H W;  3KAD A;  2ITK A;  3TDB A;  1O6W A;  2YSF A;  2XP7 A;  2XP9 A;  2DK7 A;  3KAG A;  4E5R A;  2ZQV A;  2KXQ A;  2ZAJ A;  2ZQS A;  3OOB A;  1EG3 A;  2XP8 A;  2XPB A;  3KAH A;  3TCZ A;  3WH0 A;  3KAF A;  2ZR4 A;  4U86 A;  2ZQU A;  4U85 A;  2DWV A;  2F21 A;  1NMV A;  4U84 A;  2BA1 A;  2MDI A;  2ZR5 A;  2DMV A;  3L4H A;  1YW5 A;  2JXW A;  1K9Q A;  2DK1 A;  1JMQ A;  1WR7 A;  2M3O W;  1TK7 A;  3KCE A; 
#chains in the Genus database with same CATH topology
 5CQ2 A;  4GLX A;  2EZ5 W;  1RP5 A;  1K9R A;  4QIB A;  5E65 A;  2DJY A;  3M85 A;  1PIN A;  3NTP A;  3KAB A;  3LKX B;  2L4J A;  3TC5 A;  2JV4 A;  5E64 A;  1TR8 A;  2YSI A;  2ZQT A;  2XP4 A;  2OWO A;  3KAI A;  4REX A;  2JMF A;  2JX8 A;  2ZR6 A;  1ZCN A;  2YSG A;  2RE3 A;  3FSB A;  3ODK A;  3LE4 A;  2XP5 A;  2XP3 A;  2XP6 A;  2Q5A A;  2YSB A;  3CNG A;  2LAJ A;  1WMV A;  4A0T A;  2M8I A;  2E45 A;  5AHT A;  2YSH A;  3MCB A;  1F8A B;  2M8J A;  3M7N A;  2XPA A;  1FLC A;  1EG4 A;  1I5H W;  3KAD A;  2ITK A;  3TDB A;  1O6W A;  4A0U A;  2YSF A;  2XP7 A;  2WAE A;  5E66 A;  2YAJ B;  3FS8 A;  3PQH A;  2XP9 A;  2DK7 A;  3KAG A;  2Y8N B;  4E5R A;  2ZQV A;  3MQH A;  2KXQ A;  2ZAJ A;  3LKX A;  2ZQS A;  3OOB A;  1EG3 A;  5E5W A;  2XP8 A;  2QRV A;  2XPB A;  5E62 A;  3KAH A;  3TCZ A;  3WH0 A;  3KAF A;  2ZR4 A;  4U86 A;  2ZQU A;  4U85 A;  2DWV A;  2WAD A;  2F21 A;  1NMV A;  4U84 A;  2BA1 A;  2MDI A;  2ZR5 A;  3MQG A;  3MCB B;  2DMV A;  3L4H A;  5U47 A;  1YW5 A;  2JXW A;  1K9Q A;  2DK1 A;  1JMQ A;  1WR7 A;  2M3O W;  1TK7 A;  3KCE A;  3FSC A; 
#chains in the Genus database with same CATH homology
 5CQ2 A;  4GLX A;  2EZ5 W;  1RP5 A;  1K9R A;  4QIB A;  5E65 A;  2DJY A;  3M85 A;  1PIN A;  3NTP A;  3KAB A;  3LKX B;  2L4J A;  3TC5 A;  2JV4 A;  5E64 A;  1TR8 A;  2YSI A;  2ZQT A;  2XP4 A;  2OWO A;  3KAI A;  4REX A;  2JMF A;  2JX8 A;  2ZR6 A;  1ZCN A;  2YSG A;  2RE3 A;  3FSB A;  3ODK A;  3LE4 A;  2XP5 A;  2XP3 A;  2XP6 A;  2Q5A A;  2YSB A;  3CNG A;  2LAJ A;  1WMV A;  4A0T A;  2M8I A;  2E45 A;  5AHT A;  2YSH A;  3MCB A;  1F8A B;  2M8J A;  3M7N A;  2XPA A;  1FLC A;  1EG4 A;  1I5H W;  3KAD A;  2ITK A;  3TDB A;  1O6W A;  4A0U A;  2YSF A;  2XP7 A;  2WAE A;  5E66 A;  2YAJ B;  3FS8 A;  3PQH A;  2XP9 A;  2DK7 A;  3KAG A;  2Y8N B;  4E5R A;  2ZQV A;  3MQH A;  2KXQ A;  2ZAJ A;  3LKX A;  2ZQS A;  3OOB A;  1EG3 A;  5E5W A;  2XP8 A;  2QRV A;  2XPB A;  5E62 A;  3KAH A;  3TCZ A;  3WH0 A;  3KAF A;  2ZR4 A;  4U86 A;  2ZQU A;  4U85 A;  2DWV A;  2WAD A;  2F21 A;  1NMV A;  4U84 A;  2BA1 A;  2MDI A;  2ZR5 A;  3MQG A;  3MCB B;  2DMV A;  3L4H A;  5U47 A;  1YW5 A;  2JXW A;  1K9Q A;  2DK1 A;  1JMQ A;  1WR7 A;  2M3O W;  1TK7 A;  3KCE A;  3FSC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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