2JV4A

Structure characterisation of pina ww domain and comparison with other group iv ww domains, pin1 and ess1
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
53
structure length
53
Chain Sequence
SMVNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMYMATYH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Peptidyl-prolyl cis/trans isomerase
publication title Structural characterisation of PinA WW domain and a comparison with other Group IV WW domains, Pin1 and Ess1
pubmed doi rcsb
source organism Emericella nidulans
molecule tags Isomerase
total genus 3
structure length 53
sequence length 53
ec nomenclature ec 5.2.1.8: Peptidylprolyl isomerase.
pdb deposition date 2007-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2jv4A00
1F8AB 2XP7A 2ZAJA 1TK7A 3KABA 2XPAA 2ZQVA 1K9QA 2XP5A 2ITKA 2XP8A 3TCZA 2M8JA 3TC5A 3CNGA 2JX8A 2XP4A 4U85A 4REXA 2RE3A 2ZR6A 3M85A 2M8IA 4QIBA 1K9RA 2ZQSA 3KAFA 1PINA 1JMQA 2ZR4A 2DJYA 3LE4A 2F21A 2DK1A 2XP6A 2Q5AA 2MDIA 2JV4A 3KADA 3ODKA 2XPBA 3NTPA 1WMVA 2DMVA 3TDBA 2DWVA 2JMFA 2ZR5A 2YSGA 3KAGA 2BA1A 2M3OW 2EZ5W 2XP3A 1EG4A 1EG3A 2YSHA 3M7NA 4U86A 3L4HA 2ZQUA 5CQ2A 2E45A 1ZCNA 2YSBA 1NMVA 4U84A 2ZQTA 1YW5A 3KAHA 1I5HW 5AHTA 1O6WA 2JXWA 4E5RA 3KCEA 2YSIA 1WR7A 3KAIA 2XP9A 3OOBA 2DK7A 2LAJA 2KXQA 3WH0A 2L4JA 2YSFA
chains in the Genus database with same CATH superfamily
1F8AB 2XP7A 2ZAJA 1TK7A 3MQHA 3KABA 2XPAA 2ZQVA 1K9QA 2XP5A 2ITKA 2XP8A 3LKXB 3TCZA 2M8JA 3TC5A 3CNGA 5E66A 2JX8A 3MQGA 2XP4A 4U85A 4REXA 2RE3A 2ZR6A 3M85A 2M8IA 4QIBA 1K9RA 2ZQSA 3KAFA 1PINA 1JMQA 2ZR4A 2DJYA 3LE4A 2YAJB 2F21A 4GLXA 2DK1A 2XP6A 5U47A 2Q5AA 2MDIA 2JV4A 3KADA 3ODKA 2XPBA 3NTPA 3PQHA 1WMVA 2DMVA 3TDBA 5E5WA 2DWVA 2JMFA 2ZR5A 2YSGA 1TR8A 3KAGA 2BA1A 2M3OW 2EZ5W 2XP3A 1EG4A 1EG3A 2YSHA 3M7NA 4U86A 5E65A 3L4HA 2ZQUA 5CQ2A 1FLCA 2E45A 1ZCNA 2YSBA 1NMVA 2WAEA 4U84A 3LKXA 2ZQTA 1YW5A 2Y8NB 3KAHA 2OWOA 1RP5A 1I5HW 5AHTA 1O6WA 2QRVA 2WADA 4A0UA 2JXWA 4E5RA 5E64A 5E62A 3KCEA 2YSIA 1WR7A 3KAIA 3FSCA 2XP9A 3OOBA 2DK7A 2LAJA 3MCBA 3FSBA 2KXQA 4A0TA 3WH0A 3MCBB 2L4JA 2YSFA 3FS8A
chains in the Genus database with same CATH topology
1F8AB 2XP7A 2ZAJA 1TK7A 3MQHA 3KABA 2XPAA 2ZQVA 1K9QA 2XP5A 2ITKA 2XP8A 3LKXB 3TCZA 2M8JA 3TC5A 3CNGA 5E66A 2JX8A 3MQGA 2XP4A 4U85A 4REXA 2RE3A 2ZR6A 3M85A 2M8IA 4QIBA 1K9RA 2ZQSA 3KAFA 1PINA 1JMQA 2ZR4A 2DJYA 3LE4A 2YAJB 2F21A 4GLXA 2DK1A 2XP6A 5U47A 2Q5AA 2MDIA 2JV4A 3KADA 3ODKA 2XPBA 3NTPA 3PQHA 1WMVA 2DMVA 3TDBA 5E5WA 2DWVA 2JMFA 2ZR5A 2YSGA 1TR8A 3KAGA 2BA1A 2M3OW 2EZ5W 2XP3A 1EG4A 1EG3A 2YSHA 3M7NA 4U86A 5E65A 3L4HA 2ZQUA 5CQ2A 1FLCA 2E45A 1ZCNA 2YSBA 1NMVA 2WAEA 4U84A 3LKXA 2ZQTA 1YW5A 2Y8NB 3KAHA 2OWOA 1RP5A 1I5HW 5AHTA 1O6WA 2QRVA 2WADA 4A0UA 2JXWA 4E5RA 5E64A 5E62A 3KCEA 2YSIA 1WR7A 3KAIA 3FSCA 2XP9A 3OOBA 2DK7A 2LAJA 3MCBA 3FSBA 2KXQA 4A0TA 3WH0A 3MCBB 2L4JA 2YSFA 3FS8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F8A B;  2XP7 A;  2ZAJ A;  1TK7 A;  3KAB A;  2XPA A;  2ZQV A;  1K9Q A;  2XP5 A;  2ITK A;  2XP8 A;  3TCZ A;  2M8J A;  3TC5 A;  3CNG A;  2JX8 A;  2XP4 A;  4U85 A;  4REX A;  2RE3 A;  2ZR6 A;  3M85 A;  2M8I A;  4QIB A;  1K9R A;  2ZQS A;  3KAF A;  1PIN A;  1JMQ A;  2ZR4 A;  2DJY A;  3LE4 A;  2F21 A;  2DK1 A;  2XP6 A;  2Q5A A;  2MDI A;  2JV4 A;  3KAD A;  3ODK A;  2XPB A;  3NTP A;  1WMV A;  2DMV A;  3TDB A;  2DWV A;  2JMF A;  2ZR5 A;  2YSG A;  3KAG A;  2BA1 A;  2M3O W;  2EZ5 W;  2XP3 A;  1EG4 A;  1EG3 A;  2YSH A;  3M7N A;  4U86 A;  3L4H A;  2ZQU A;  5CQ2 A;  2E45 A;  1ZCN A;  2YSB A;  1NMV A;  4U84 A;  2ZQT A;  1YW5 A;  3KAH A;  1I5H W;  5AHT A;  1O6W A;  2JXW A;  4E5R A;  3KCE A;  2YSI A;  1WR7 A;  3KAI A;  2XP9 A;  3OOB A;  2DK7 A;  2LAJ A;  2KXQ A;  3WH0 A;  2L4J A;  2YSF A; 
#chains in the Genus database with same CATH topology
 1F8A B;  2XP7 A;  2ZAJ A;  1TK7 A;  3MQH A;  3KAB A;  2XPA A;  2ZQV A;  1K9Q A;  2XP5 A;  2ITK A;  2XP8 A;  3LKX B;  3TCZ A;  2M8J A;  3TC5 A;  3CNG A;  5E66 A;  2JX8 A;  3MQG A;  2XP4 A;  4U85 A;  4REX A;  2RE3 A;  2ZR6 A;  3M85 A;  2M8I A;  4QIB A;  1K9R A;  2ZQS A;  3KAF A;  1PIN A;  1JMQ A;  2ZR4 A;  2DJY A;  3LE4 A;  2YAJ B;  2F21 A;  4GLX A;  2DK1 A;  2XP6 A;  5U47 A;  2Q5A A;  2MDI A;  2JV4 A;  3KAD A;  3ODK A;  2XPB A;  3NTP A;  3PQH A;  1WMV A;  2DMV A;  3TDB A;  5E5W A;  2DWV A;  2JMF A;  2ZR5 A;  2YSG A;  1TR8 A;  3KAG A;  2BA1 A;  2M3O W;  2EZ5 W;  2XP3 A;  1EG4 A;  1EG3 A;  2YSH A;  3M7N A;  4U86 A;  5E65 A;  3L4H A;  2ZQU A;  5CQ2 A;  1FLC A;  2E45 A;  1ZCN A;  2YSB A;  1NMV A;  2WAE A;  4U84 A;  3LKX A;  2ZQT A;  1YW5 A;  2Y8N B;  3KAH A;  2OWO A;  1RP5 A;  1I5H W;  5AHT A;  1O6W A;  2QRV A;  2WAD A;  4A0U A;  2JXW A;  4E5R A;  5E64 A;  5E62 A;  3KCE A;  2YSI A;  1WR7 A;  3KAI A;  3FSC A;  2XP9 A;  3OOB A;  2DK7 A;  2LAJ A;  3MCB A;  3FSB A;  2KXQ A;  4A0T A;  3WH0 A;  3MCB B;  2L4J A;  2YSF A;  3FS8 A; 
#chains in the Genus database with same CATH homology
 1F8A B;  2XP7 A;  2ZAJ A;  1TK7 A;  3MQH A;  3KAB A;  2XPA A;  2ZQV A;  1K9Q A;  2XP5 A;  2ITK A;  2XP8 A;  3LKX B;  3TCZ A;  2M8J A;  3TC5 A;  3CNG A;  5E66 A;  2JX8 A;  3MQG A;  2XP4 A;  4U85 A;  4REX A;  2RE3 A;  2ZR6 A;  3M85 A;  2M8I A;  4QIB A;  1K9R A;  2ZQS A;  3KAF A;  1PIN A;  1JMQ A;  2ZR4 A;  2DJY A;  3LE4 A;  2YAJ B;  2F21 A;  4GLX A;  2DK1 A;  2XP6 A;  5U47 A;  2Q5A A;  2MDI A;  2JV4 A;  3KAD A;  3ODK A;  2XPB A;  3NTP A;  3PQH A;  1WMV A;  2DMV A;  3TDB A;  5E5W A;  2DWV A;  2JMF A;  2ZR5 A;  2YSG A;  1TR8 A;  3KAG A;  2BA1 A;  2M3O W;  2EZ5 W;  2XP3 A;  1EG4 A;  1EG3 A;  2YSH A;  3M7N A;  4U86 A;  5E65 A;  3L4H A;  2ZQU A;  5CQ2 A;  1FLC A;  2E45 A;  1ZCN A;  2YSB A;  1NMV A;  2WAE A;  4U84 A;  3LKX A;  2ZQT A;  1YW5 A;  2Y8N B;  3KAH A;  2OWO A;  1RP5 A;  1I5H W;  5AHT A;  1O6W A;  2QRV A;  2WAD A;  4A0U A;  2JXW A;  4E5R A;  5E64 A;  5E62 A;  3KCE A;  2YSI A;  1WR7 A;  3KAI A;  3FSC A;  2XP9 A;  3OOB A;  2DK7 A;  2LAJ A;  3MCB A;  3FSB A;  2KXQ A;  4A0T A;  3WH0 A;  3MCB B;  2L4J A;  2YSF A;  3FS8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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