2YSIA

Solution structure of the first ww domain from the mouse transcription elongation regulator 1, transcription factor ca150
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
40
structure length
40
Chain Sequence
GSSGSSGTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Transcription elongation regulator 1
publication title Solution structure of the first WW domain from the mouse transcription elongation regulator 1, transcription factor CA150
rcsb
source organism Mus musculus
total genus 1
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2ysiA01
2DWVA 2RE3A 2JXWA 2ZR6A 3NTPA 2XPBA 2XP3A 2ZQVA 2E45A 3OOBA 3KABA 2Q5AA 1TK7A 2ITKA 2ZR5A 2M3OW 2BA1A 1YW5A 3KAGA 3M85A 2ZR4A 2ZAJA 4REXA 1I5HW 2XP4A 2YSGA 2YSBA 2XP8A 2DMVA 1EG4A 2DK1A 3LE4A 3TCZA 2KXQA 1ZCNA 1NMVA 3KAHA 1EG3A 2ZQSA 3ODKA 2DJYA 1PINA 3CNGA 3L4HA 1K9RA 3KADA 2JMFA 3KCEA 1F8AB 3TC5A 4E5RA 2L4JA 1WR7A 1K9QA 2XP9A 1O6WA 4U84A 2XP5A 2JX8A 3WH0A 2EZ5W 2MDIA 4U85A 2XP6A 1WMVA 4QIBA 4U86A 5AHTA 3TDBA 2DK7A 2ZQTA 3KAIA 2LAJA 2F21A 2ZQUA 2M8JA 2YSFA 2XPAA 3M7NA 2YSIA 2YSHA 5CQ2A 2JV4A 1JMQA 3KAFA 2M8IA 2XP7A
chains in the Genus database with same CATH superfamily
3MQHA 3MCBB 2DWVA 2RE3A 2JXWA 2ZR6A 3NTPA 5E65A 2XPBA 2XP3A 2ZQVA 2E45A 3OOBA 4GLXA 3LKXA 3KABA 1FLCA 2Q5AA 1TK7A 2ITKA 2ZR5A 2M3OW 2BA1A 1YW5A 3KAGA 3LKXB 3M85A 4A0TA 2ZR4A 2ZAJA 5E5WA 4REXA 1I5HW 2XP4A 2YSGA 5E62A 2YSBA 2XP8A 2DMVA 5E66A 1EG4A 2DK1A 3LE4A 3FSBA 3TCZA 2KXQA 1TR8A 1ZCNA 5U47A 1NMVA 3KAHA 1EG3A 2ZQSA 3ODKA 2DJYA 3FS8A 1PINA 3CNGA 3L4HA 1K9RA 3KADA 2JMFA 3KCEA 1F8AB 3TC5A 4E5RA 2L4JA 1WR7A 1K9QA 2XP9A 1O6WA 4U84A 1RP5A 2XP5A 2JX8A 3MQGA 3WH0A 3MCBA 2EZ5W 4A0UA 2MDIA 4U85A 2XP6A 1WMVA 4QIBA 4U86A 2YAJB 5AHTA 3TDBA 2QRVA 2DK7A 2ZQTA 2WAEA 5E64A 3KAIA 2LAJA 2F21A 2ZQUA 2M8JA 2YSFA 2XPAA 3M7NA 2WADA 2YSIA 2YSHA 5CQ2A 3FSCA 2JV4A 1JMQA 3KAFA 2OWOA 2M8IA 2XP7A 2Y8NB 3PQHA
chains in the Genus database with same CATH topology
3MQHA 3MCBB 2DWVA 2RE3A 2JXWA 2ZR6A 3NTPA 5E65A 2XPBA 2XP3A 2ZQVA 2E45A 3OOBA 4GLXA 3LKXA 3KABA 1FLCA 2Q5AA 1TK7A 2ITKA 2ZR5A 2M3OW 2BA1A 1YW5A 3KAGA 3LKXB 3M85A 4A0TA 2ZR4A 2ZAJA 5E5WA 4REXA 1I5HW 2XP4A 2YSGA 5E62A 2YSBA 2XP8A 2DMVA 5E66A 1EG4A 2DK1A 3LE4A 3FSBA 3TCZA 2KXQA 1TR8A 1ZCNA 5U47A 1NMVA 3KAHA 1EG3A 2ZQSA 3ODKA 2DJYA 3FS8A 1PINA 3CNGA 3L4HA 1K9RA 3KADA 2JMFA 3KCEA 1F8AB 3TC5A 4E5RA 2L4JA 1WR7A 1K9QA 2XP9A 1O6WA 4U84A 1RP5A 2XP5A 2JX8A 3MQGA 3WH0A 3MCBA 2EZ5W 4A0UA 2MDIA 4U85A 2XP6A 1WMVA 4QIBA 4U86A 2YAJB 5AHTA 3TDBA 2QRVA 2DK7A 2ZQTA 2WAEA 5E64A 3KAIA 2LAJA 2F21A 2ZQUA 2M8JA 2YSFA 2XPAA 3M7NA 2WADA 2YSIA 2YSHA 5CQ2A 3FSCA 2JV4A 1JMQA 3KAFA 2OWOA 2M8IA 2XP7A 2Y8NB 3PQHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DWV A;  2RE3 A;  2JXW A;  2ZR6 A;  3NTP A;  2XPB A;  2XP3 A;  2ZQV A;  2E45 A;  3OOB A;  3KAB A;  2Q5A A;  1TK7 A;  2ITK A;  2ZR5 A;  2M3O W;  2BA1 A;  1YW5 A;  3KAG A;  3M85 A;  2ZR4 A;  2ZAJ A;  4REX A;  1I5H W;  2XP4 A;  2YSG A;  2YSB A;  2XP8 A;  2DMV A;  1EG4 A;  2DK1 A;  3LE4 A;  3TCZ A;  2KXQ A;  1ZCN A;  1NMV A;  3KAH A;  1EG3 A;  2ZQS A;  3ODK A;  2DJY A;  1PIN A;  3CNG A;  3L4H A;  1K9R A;  3KAD A;  2JMF A;  3KCE A;  1F8A B;  3TC5 A;  4E5R A;  2L4J A;  1WR7 A;  1K9Q A;  2XP9 A;  1O6W A;  4U84 A;  2XP5 A;  2JX8 A;  3WH0 A;  2EZ5 W;  2MDI A;  4U85 A;  2XP6 A;  1WMV A;  4QIB A;  4U86 A;  5AHT A;  3TDB A;  2DK7 A;  2ZQT A;  3KAI A;  2LAJ A;  2F21 A;  2ZQU A;  2M8J A;  2YSF A;  2XPA A;  3M7N A;  2YSI A;  2YSH A;  5CQ2 A;  2JV4 A;  1JMQ A;  3KAF A;  2M8I A;  2XP7 A; 
#chains in the Genus database with same CATH topology
 3MQH A;  3MCB B;  2DWV A;  2RE3 A;  2JXW A;  2ZR6 A;  3NTP A;  5E65 A;  2XPB A;  2XP3 A;  2ZQV A;  2E45 A;  3OOB A;  4GLX A;  3LKX A;  3KAB A;  1FLC A;  2Q5A A;  1TK7 A;  2ITK A;  2ZR5 A;  2M3O W;  2BA1 A;  1YW5 A;  3KAG A;  3LKX B;  3M85 A;  4A0T A;  2ZR4 A;  2ZAJ A;  5E5W A;  4REX A;  1I5H W;  2XP4 A;  2YSG A;  5E62 A;  2YSB A;  2XP8 A;  2DMV A;  5E66 A;  1EG4 A;  2DK1 A;  3LE4 A;  3FSB A;  3TCZ A;  2KXQ A;  1TR8 A;  1ZCN A;  5U47 A;  1NMV A;  3KAH A;  1EG3 A;  2ZQS A;  3ODK A;  2DJY A;  3FS8 A;  1PIN A;  3CNG A;  3L4H A;  1K9R A;  3KAD A;  2JMF A;  3KCE A;  1F8A B;  3TC5 A;  4E5R A;  2L4J A;  1WR7 A;  1K9Q A;  2XP9 A;  1O6W A;  4U84 A;  1RP5 A;  2XP5 A;  2JX8 A;  3MQG A;  3WH0 A;  3MCB A;  2EZ5 W;  4A0U A;  2MDI A;  4U85 A;  2XP6 A;  1WMV A;  4QIB A;  4U86 A;  2YAJ B;  5AHT A;  3TDB A;  2QRV A;  2DK7 A;  2ZQT A;  2WAE A;  5E64 A;  3KAI A;  2LAJ A;  2F21 A;  2ZQU A;  2M8J A;  2YSF A;  2XPA A;  3M7N A;  2WAD A;  2YSI A;  2YSH A;  5CQ2 A;  3FSC A;  2JV4 A;  1JMQ A;  3KAF A;  2OWO A;  2M8I A;  2XP7 A;  2Y8N B;  3PQH A; 
#chains in the Genus database with same CATH homology
 3MQH A;  3MCB B;  2DWV A;  2RE3 A;  2JXW A;  2ZR6 A;  3NTP A;  5E65 A;  2XPB A;  2XP3 A;  2ZQV A;  2E45 A;  3OOB A;  4GLX A;  3LKX A;  3KAB A;  1FLC A;  2Q5A A;  1TK7 A;  2ITK A;  2ZR5 A;  2M3O W;  2BA1 A;  1YW5 A;  3KAG A;  3LKX B;  3M85 A;  4A0T A;  2ZR4 A;  2ZAJ A;  5E5W A;  4REX A;  1I5H W;  2XP4 A;  2YSG A;  5E62 A;  2YSB A;  2XP8 A;  2DMV A;  5E66 A;  1EG4 A;  2DK1 A;  3LE4 A;  3FSB A;  3TCZ A;  2KXQ A;  1TR8 A;  1ZCN A;  5U47 A;  1NMV A;  3KAH A;  1EG3 A;  2ZQS A;  3ODK A;  2DJY A;  3FS8 A;  1PIN A;  3CNG A;  3L4H A;  1K9R A;  3KAD A;  2JMF A;  3KCE A;  1F8A B;  3TC5 A;  4E5R A;  2L4J A;  1WR7 A;  1K9Q A;  2XP9 A;  1O6W A;  4U84 A;  1RP5 A;  2XP5 A;  2JX8 A;  3MQG A;  3WH0 A;  3MCB A;  2EZ5 W;  4A0U A;  2MDI A;  4U85 A;  2XP6 A;  1WMV A;  4QIB A;  4U86 A;  2YAJ B;  5AHT A;  3TDB A;  2QRV A;  2DK7 A;  2ZQT A;  2WAE A;  5E64 A;  3KAI A;  2LAJ A;  2F21 A;  2ZQU A;  2M8J A;  2YSF A;  2XPA A;  3M7N A;  2WAD A;  2YSI A;  2YSH A;  5CQ2 A;  3FSC A;  2JV4 A;  1JMQ A;  3KAF A;  2OWO A;  2M8I A;  2XP7 A;  2Y8N B;  3PQH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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