3MCBA

Crystal structure of nac domains of human nascent polypeptide-associated complex (nac)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
54
structure length
54
Chain Sequence
AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone
molecule keywords Nascent polypeptide-associated complex subunit alpha
publication title Crystal structures of NAC domains of human nascent polypeptide-associated complex (NAC) and its alphaNAC subunit
pubmed doi rcsb
source organism Homo sapiens
total genus 8
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 2010-03-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.30 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 3mcbA00
1TR8A 3LKXB 3MCBA 3MCBB 3LKXA
chains in the Genus database with same CATH superfamily
2DK7A 3PQHA 3LKXA 3L4HA 4E5RA 2DK1A 2XP4A 5E64A 2LAJA 3LKXB 2F21A 4REXA 3KADA 2ZQTA 3LE4A 4QIBA 2XPBA 3FS8A 5E62A 2XP8A 3MCBB 2RE3A 2KXQA 2WAEA 2XP5A 1K9QA 5E65A 1JMQA 5AHTA 1K9RA 2XP7A 2XP6A 2QRVA 3MQGA 2ZQVA 2ZQUA 1ZCNA 2YSFA 2ITKA 2JMFA 2MDIA 2YAJB 1TK7A 2WADA 4A0UA 2M8IA 3TC5A 5E66A 2YSGA 2OWOA 2M3OW 2XP3A 2YSHA 1FLCA 2JX8A 1O6WA 1WR7A 2ZAJA 1EG3A 3CNGA 3KCEA 3OOBA 3TDBA 4A0TA 4GLXA 3KABA 1I5HW 3NTPA 4U85A 3FSBA 3M85A 1YW5A 2EZ5W 3ODKA 3TCZA 3FSCA 2ZR4A 5CQ2A 1RP5A 1TR8A 2JXWA 2ZQSA 5U47A 2BA1A 2YSBA 3KAIA 2DWVA 2E45A 2Y8NB 2ZR5A 2JV4A 3KAGA 2DMVA 2YSIA 4U84A 3KAFA 1F8AB 1WMVA 3KAHA 1PINA 2ZR6A 3WH0A 4U86A 1EG4A 2XP9A 2Q5AA 2L4JA 2DJYA 3MCBA 3MQHA 2M8JA 2XPAA 5E5WA 3M7NA 1NMVA
chains in the Genus database with same CATH topology
2DK7A 3PQHA 3LKXA 3L4HA 4E5RA 2DK1A 2XP4A 5E64A 2LAJA 3LKXB 2F21A 4REXA 3KADA 2ZQTA 3LE4A 4QIBA 2XPBA 3FS8A 5E62A 2XP8A 3MCBB 2RE3A 2KXQA 2WAEA 2XP5A 1K9QA 5E65A 1JMQA 5AHTA 1K9RA 2XP7A 2XP6A 2QRVA 3MQGA 2ZQVA 2ZQUA 1ZCNA 2YSFA 2ITKA 2JMFA 2MDIA 2YAJB 1TK7A 2WADA 4A0UA 2M8IA 3TC5A 5E66A 2YSGA 2OWOA 2M3OW 2XP3A 2YSHA 1FLCA 2JX8A 1O6WA 1WR7A 2ZAJA 1EG3A 3CNGA 3KCEA 3OOBA 3TDBA 4A0TA 4GLXA 3KABA 1I5HW 3NTPA 4U85A 3FSBA 3M85A 1YW5A 2EZ5W 3ODKA 3TCZA 3FSCA 2ZR4A 5CQ2A 1RP5A 1TR8A 2JXWA 2ZQSA 5U47A 2BA1A 2YSBA 3KAIA 2DWVA 2E45A 2Y8NB 2ZR5A 2JV4A 3KAGA 2DMVA 2YSIA 4U84A 3KAFA 1F8AB 1WMVA 3KAHA 1PINA 2ZR6A 3WH0A 4U86A 1EG4A 2XP9A 2Q5AA 2L4JA 2DJYA 3MCBA 3MQHA 2M8JA 2XPAA 5E5WA 3M7NA 1NMVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TR8 A;  3LKX B;  3MCB A;  3MCB B;  3LKX A; 
#chains in the Genus database with same CATH topology
 2DK7 A;  3PQH A;  3LKX A;  3L4H A;  4E5R A;  2DK1 A;  2XP4 A;  5E64 A;  2LAJ A;  3LKX B;  2F21 A;  4REX A;  3KAD A;  2ZQT A;  3LE4 A;  4QIB A;  2XPB A;  3FS8 A;  5E62 A;  2XP8 A;  3MCB B;  2RE3 A;  2KXQ A;  2WAE A;  2XP5 A;  1K9Q A;  5E65 A;  1JMQ A;  5AHT A;  1K9R A;  2XP7 A;  2XP6 A;  2QRV A;  3MQG A;  2ZQV A;  2ZQU A;  1ZCN A;  2YSF A;  2ITK A;  2JMF A;  2MDI A;  2YAJ B;  1TK7 A;  2WAD A;  4A0U A;  2M8I A;  3TC5 A;  5E66 A;  2YSG A;  2OWO A;  2M3O W;  2XP3 A;  2YSH A;  1FLC A;  2JX8 A;  1O6W A;  1WR7 A;  2ZAJ A;  1EG3 A;  3CNG A;  3KCE A;  3OOB A;  3TDB A;  4A0T A;  4GLX A;  3KAB A;  1I5H W;  3NTP A;  4U85 A;  3FSB A;  3M85 A;  1YW5 A;  2EZ5 W;  3ODK A;  3TCZ A;  3FSC A;  2ZR4 A;  5CQ2 A;  1RP5 A;  1TR8 A;  2JXW A;  2ZQS A;  5U47 A;  2BA1 A;  2YSB A;  3KAI A;  2DWV A;  2E45 A;  2Y8N B;  2ZR5 A;  2JV4 A;  3KAG A;  2DMV A;  2YSI A;  4U84 A;  3KAF A;  1F8A B;  1WMV A;  3KAH A;  1PIN A;  2ZR6 A;  3WH0 A;  4U86 A;  1EG4 A;  2XP9 A;  2Q5A A;  2L4J A;  2DJY A;  3MCB A;  3MQH A;  2M8J A;  2XPA A;  5E5W A;  3M7N A;  1NMV A; 
#chains in the Genus database with same CATH homology
 2DK7 A;  3PQH A;  3LKX A;  3L4H A;  4E5R A;  2DK1 A;  2XP4 A;  5E64 A;  2LAJ A;  3LKX B;  2F21 A;  4REX A;  3KAD A;  2ZQT A;  3LE4 A;  4QIB A;  2XPB A;  3FS8 A;  5E62 A;  2XP8 A;  3MCB B;  2RE3 A;  2KXQ A;  2WAE A;  2XP5 A;  1K9Q A;  5E65 A;  1JMQ A;  5AHT A;  1K9R A;  2XP7 A;  2XP6 A;  2QRV A;  3MQG A;  2ZQV A;  2ZQU A;  1ZCN A;  2YSF A;  2ITK A;  2JMF A;  2MDI A;  2YAJ B;  1TK7 A;  2WAD A;  4A0U A;  2M8I A;  3TC5 A;  5E66 A;  2YSG A;  2OWO A;  2M3O W;  2XP3 A;  2YSH A;  1FLC A;  2JX8 A;  1O6W A;  1WR7 A;  2ZAJ A;  1EG3 A;  3CNG A;  3KCE A;  3OOB A;  3TDB A;  4A0T A;  4GLX A;  3KAB A;  1I5H W;  3NTP A;  4U85 A;  3FSB A;  3M85 A;  1YW5 A;  2EZ5 W;  3ODK A;  3TCZ A;  3FSC A;  2ZR4 A;  5CQ2 A;  1RP5 A;  1TR8 A;  2JXW A;  2ZQS A;  5U47 A;  2BA1 A;  2YSB A;  3KAI A;  2DWV A;  2E45 A;  2Y8N B;  2ZR5 A;  2JV4 A;  3KAG A;  2DMV A;  2YSI A;  4U84 A;  3KAF A;  1F8A B;  1WMV A;  3KAH A;  1PIN A;  2ZR6 A;  3WH0 A;  4U86 A;  1EG4 A;  2XP9 A;  2Q5A A;  2L4J A;  2DJY A;  3MCB A;  3MQH A;  2M8J A;  2XPA A;  5E5W A;  3M7N A;  1NMV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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