3MCBA

Crystal structure of nac domains of human nascent polypeptide-associated complex (nac)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
54
structure length
54
Chain Sequence
AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structures of NAC domains of human nascent polypeptide-associated complex (NAC) and its alphaNAC subunit
pubmed doi rcsb
molecule tags Chaperone
source organism Homo sapiens
molecule keywords Nascent polypeptide-associated complex subunit alpha
total genus 8
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 2010-03-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.30 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 3mcbA00
3MCBA 3MCBB 1TR8A 3LKXA 3LKXB
chains in the Genus database with same CATH superfamily
1RP5A 2EZ5W 1YW5A 2YSGA 1EG4A 5E64A 3L4HA 2ZQUA 3TC5A 5E66A 2DWVA 3MQHA 4U84A 3OOBA 3WH0A 3KABA 2QRVA 3KAHA 2XP7A 1FLCA 1I5HW 3M85A 2OWOA 4A0TA 2XP4A 2XP5A 2JXWA 2ZR4A 2XPBA 2YSHA 1F8AB 3LKXA 4REXA 2JMFA 1WR7A 5E65A 2WAEA 3FSBA 3MCBA 4A0UA 2JX8A 2YSBA 1PINA 4U86A 2RE3A 2XP8A 2XP6A 2M3OW 2ZR6A 2ITKA 3ODKA 3LE4A 3LKXB 2Y8NB 2ZQVA 3KADA 3PQHA 2BA1A 3CNGA 3MCBB 1TR8A 2ZR5A 3MQGA 4U85A 3KAGA 5E5WA 4E5RA 3FSCA 3NTPA 2ZAJA 3TCZA 1JMQA 1TK7A 2YSIA 1WMVA 1ZCNA 5E62A 3KAFA 2XP3A 3KAIA 2Q5AA 2F21A 2DK1A 2YSFA 2MDIA 1K9RA 2DJYA 1NMVA 2JV4A 1O6WA 3TDBA 2XPAA 1EG3A 2ZQSA 5U47A 2M8JA 2M8IA 1K9QA 2ZQTA 5CQ2A 2YAJB 3KCEA 2DMVA 3M7NA 2KXQA 4QIBA 4GLXA 2DK7A 2LAJA 5AHTA 2L4JA 3FS8A 2XP9A 2WADA 2E45A
chains in the Genus database with same CATH topology
1RP5A 2EZ5W 1YW5A 2YSGA 1EG4A 5E64A 3L4HA 2ZQUA 3TC5A 5E66A 2DWVA 3MQHA 4U84A 3OOBA 3WH0A 3KABA 2QRVA 3KAHA 2XP7A 1FLCA 1I5HW 3M85A 2OWOA 4A0TA 2XP4A 2XP5A 2JXWA 2ZR4A 2XPBA 2YSHA 1F8AB 3LKXA 4REXA 2JMFA 1WR7A 5E65A 2WAEA 3FSBA 3MCBA 4A0UA 2JX8A 2YSBA 1PINA 4U86A 2RE3A 2XP8A 2XP6A 2M3OW 2ZR6A 2ITKA 3ODKA 3LE4A 3LKXB 2Y8NB 2ZQVA 3KADA 3PQHA 2BA1A 3CNGA 3MCBB 1TR8A 2ZR5A 3MQGA 4U85A 3KAGA 5E5WA 4E5RA 3FSCA 3NTPA 2ZAJA 3TCZA 1JMQA 1TK7A 2YSIA 1WMVA 1ZCNA 5E62A 3KAFA 2XP3A 3KAIA 2Q5AA 2F21A 2DK1A 2YSFA 2MDIA 1K9RA 2DJYA 1NMVA 2JV4A 1O6WA 3TDBA 2XPAA 1EG3A 2ZQSA 5U47A 2M8JA 2M8IA 1K9QA 2ZQTA 5CQ2A 2YAJB 3KCEA 2DMVA 3M7NA 2KXQA 4QIBA 4GLXA 2DK7A 2LAJA 5AHTA 2L4JA 3FS8A 2XP9A 2WADA 2E45A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MCB A;  3MCB B;  1TR8 A;  3LKX A;  3LKX B; 
#chains in the Genus database with same CATH topology
 1RP5 A;  2EZ5 W;  1YW5 A;  2YSG A;  1EG4 A;  5E64 A;  3L4H A;  2ZQU A;  3TC5 A;  5E66 A;  2DWV A;  3MQH A;  4U84 A;  3OOB A;  3WH0 A;  3KAB A;  2QRV A;  3KAH A;  2XP7 A;  1FLC A;  1I5H W;  3M85 A;  2OWO A;  4A0T A;  2XP4 A;  2XP5 A;  2JXW A;  2ZR4 A;  2XPB A;  2YSH A;  1F8A B;  3LKX A;  4REX A;  2JMF A;  1WR7 A;  5E65 A;  2WAE A;  3FSB A;  3MCB A;  4A0U A;  2JX8 A;  2YSB A;  1PIN A;  4U86 A;  2RE3 A;  2XP8 A;  2XP6 A;  2M3O W;  2ZR6 A;  2ITK A;  3ODK A;  3LE4 A;  3LKX B;  2Y8N B;  2ZQV A;  3KAD A;  3PQH A;  2BA1 A;  3CNG A;  3MCB B;  1TR8 A;  2ZR5 A;  3MQG A;  4U85 A;  3KAG A;  5E5W A;  4E5R A;  3FSC A;  3NTP A;  2ZAJ A;  3TCZ A;  1JMQ A;  1TK7 A;  2YSI A;  1WMV A;  1ZCN A;  5E62 A;  3KAF A;  2XP3 A;  3KAI A;  2Q5A A;  2F21 A;  2DK1 A;  2YSF A;  2MDI A;  1K9R A;  2DJY A;  1NMV A;  2JV4 A;  1O6W A;  3TDB A;  2XPA A;  1EG3 A;  2ZQS A;  5U47 A;  2M8J A;  2M8I A;  1K9Q A;  2ZQT A;  5CQ2 A;  2YAJ B;  3KCE A;  2DMV A;  3M7N A;  2KXQ A;  4QIB A;  4GLX A;  2DK7 A;  2LAJ A;  5AHT A;  2L4J A;  3FS8 A;  2XP9 A;  2WAD A;  2E45 A; 
#chains in the Genus database with same CATH homology
 1RP5 A;  2EZ5 W;  1YW5 A;  2YSG A;  1EG4 A;  5E64 A;  3L4H A;  2ZQU A;  3TC5 A;  5E66 A;  2DWV A;  3MQH A;  4U84 A;  3OOB A;  3WH0 A;  3KAB A;  2QRV A;  3KAH A;  2XP7 A;  1FLC A;  1I5H W;  3M85 A;  2OWO A;  4A0T A;  2XP4 A;  2XP5 A;  2JXW A;  2ZR4 A;  2XPB A;  2YSH A;  1F8A B;  3LKX A;  4REX A;  2JMF A;  1WR7 A;  5E65 A;  2WAE A;  3FSB A;  3MCB A;  4A0U A;  2JX8 A;  2YSB A;  1PIN A;  4U86 A;  2RE3 A;  2XP8 A;  2XP6 A;  2M3O W;  2ZR6 A;  2ITK A;  3ODK A;  3LE4 A;  3LKX B;  2Y8N B;  2ZQV A;  3KAD A;  3PQH A;  2BA1 A;  3CNG A;  3MCB B;  1TR8 A;  2ZR5 A;  3MQG A;  4U85 A;  3KAG A;  5E5W A;  4E5R A;  3FSC A;  3NTP A;  2ZAJ A;  3TCZ A;  1JMQ A;  1TK7 A;  2YSI A;  1WMV A;  1ZCN A;  5E62 A;  3KAF A;  2XP3 A;  3KAI A;  2Q5A A;  2F21 A;  2DK1 A;  2YSF A;  2MDI A;  1K9R A;  2DJY A;  1NMV A;  2JV4 A;  1O6W A;  3TDB A;  2XPA A;  1EG3 A;  2ZQS A;  5U47 A;  2M8J A;  2M8I A;  1K9Q A;  2ZQT A;  5CQ2 A;  2YAJ B;  3KCE A;  2DMV A;  3M7N A;  2KXQ A;  4QIB A;  4GLX A;  2DK7 A;  2LAJ A;  5AHT A;  2L4J A;  3FS8 A;  2XP9 A;  2WAD A;  2E45 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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