1JMQA

Yap65 (l30k mutant) ww domain in complex with gtppppytvg peptide
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
46
structure length
46
Chain Sequence
FEIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (14-17)TIV1 (21-24)S1 (17-21)TI1 (31-34)TIV2 (22-25)S2 (27-31)S3 (36-38)TIV3 (41-44)TVIII1 (9-12)Updating...
connected with : NaN
molecule tags Structural protein
source organism Homo sapiens
publication title Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope.
pubmed doi rcsb
molecule keywords 65 KDA YES-ASSOCIATED PROTEIN
total genus 2
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2001-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1jmqA00
2E45A 3WH0A 2YSHA 3ODKA 1WR7A 2ZQUA 1WMVA 3KAFA 2EZ5W 2JV4A 1ZCNA 2DK7A 1F8AB 3M85A 2XP6A 1NMVA 1JMQA 3KABA 1YW5A 2XP9A 2KXQA 1O6WA 2XPBA 2YSIA 2XP8A 2DWVA 2ZR6A 3KAHA 3KADA 3KCEA 2ZQSA 1PINA 3KAGA 2ZR5A 4U85A 2XP7A 2XP3A 3TCZA 1K9QA 4U84A 5CQ2A 3M7NA 2BA1A 2DK1A 2XP5A 3KAIA 3L4HA 2F21A 4U86A 3TC5A 4E5RA 4REXA 2YSFA 2LAJA 2RE3A 1EG3A 3CNGA 4QIBA 2ZQTA 1K9RA 1I5HW 2ITKA 2M8IA 2ZAJA 2DMVA 2M8JA 2JXWA 2M3OW 1TK7A 2Q5AA 5AHTA 2DJYA 2XPAA 2ZR4A 3LE4A 3NTPA 2JX8A 2YSGA 2L4JA 2JMFA 2MDIA 3TDBA 2YSBA 1EG4A 3OOBA 2XP4A 2ZQVA
chains in the Genus database with same CATH superfamily
2E45A 3WH0A 2YSHA 3ODKA 1WR7A 3MCBB 2ZQUA 1WMVA 3KAFA 3FSBA 2EZ5W 2JV4A 1ZCNA 2DK7A 1F8AB 4A0UA 3M85A 2XP6A 1NMVA 1JMQA 1RP5A 3KABA 1YW5A 3MQHA 2XP9A 2KXQA 1O6WA 2XPBA 2YSIA 2XP8A 2DWVA 2ZR6A 3KAHA 3KADA 3KCEA 2ZQSA 1PINA 3KAGA 2ZR5A 4U85A 3MCBA 5E62A 2XP7A 2XP3A 3TCZA 4A0TA 5E5WA 1K9QA 4U84A 5CQ2A 3M7NA 2BA1A 1FLCA 2DK1A 2XP5A 3KAIA 3L4HA 2F21A 4U86A 3TC5A 4E5RA 4REXA 2YSFA 2LAJA 2RE3A 1EG3A 3CNGA 5E64A 3FS8A 4QIBA 2ZQTA 4GLXA 1K9RA 2OWOA 3FSCA 1I5HW 2ITKA 2M8IA 2WADA 2YAJB 2ZAJA 2DMVA 2M8JA 2JXWA 5E66A 2M3OW 5E65A 1TK7A 2Q5AA 5AHTA 2DJYA 2WAEA 2XPAA 3LKXB 2ZR4A 3MQGA 5U47A 3LE4A 3NTPA 2JX8A 2YSGA 3PQHA 2L4JA 2JMFA 2MDIA 3TDBA 2YSBA 3LKXA 2QRVA 1EG4A 1TR8A 3OOBA 2XP4A 2Y8NB 2ZQVA
chains in the Genus database with same CATH topology
2E45A 3WH0A 2YSHA 3ODKA 1WR7A 3MCBB 2ZQUA 1WMVA 3KAFA 3FSBA 2EZ5W 2JV4A 1ZCNA 2DK7A 1F8AB 4A0UA 3M85A 2XP6A 1NMVA 1JMQA 1RP5A 3KABA 1YW5A 3MQHA 2XP9A 2KXQA 1O6WA 2XPBA 2YSIA 2XP8A 2DWVA 2ZR6A 3KAHA 3KADA 3KCEA 2ZQSA 1PINA 3KAGA 2ZR5A 4U85A 3MCBA 5E62A 2XP7A 2XP3A 3TCZA 4A0TA 5E5WA 1K9QA 4U84A 5CQ2A 3M7NA 2BA1A 1FLCA 2DK1A 2XP5A 3KAIA 3L4HA 2F21A 4U86A 3TC5A 4E5RA 4REXA 2YSFA 2LAJA 2RE3A 1EG3A 3CNGA 5E64A 3FS8A 4QIBA 2ZQTA 4GLXA 1K9RA 2OWOA 3FSCA 1I5HW 2ITKA 2M8IA 2WADA 2YAJB 2ZAJA 2DMVA 2M8JA 2JXWA 5E66A 2M3OW 5E65A 1TK7A 2Q5AA 5AHTA 2DJYA 2WAEA 2XPAA 3LKXB 2ZR4A 3MQGA 5U47A 3LE4A 3NTPA 2JX8A 2YSGA 3PQHA 2L4JA 2JMFA 2MDIA 3TDBA 2YSBA 3LKXA 2QRVA 1EG4A 1TR8A 3OOBA 2XP4A 2Y8NB 2ZQVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E45 A;  3WH0 A;  2YSH A;  3ODK A;  1WR7 A;  2ZQU A;  1WMV A;  3KAF A;  2EZ5 W;  2JV4 A;  1ZCN A;  2DK7 A;  1F8A B;  3M85 A;  2XP6 A;  1NMV A;  1JMQ A;  3KAB A;  1YW5 A;  2XP9 A;  2KXQ A;  1O6W A;  2XPB A;  2YSI A;  2XP8 A;  2DWV A;  2ZR6 A;  3KAH A;  3KAD A;  3KCE A;  2ZQS A;  1PIN A;  3KAG A;  2ZR5 A;  4U85 A;  2XP7 A;  2XP3 A;  3TCZ A;  1K9Q A;  4U84 A;  5CQ2 A;  3M7N A;  2BA1 A;  2DK1 A;  2XP5 A;  3KAI A;  3L4H A;  2F21 A;  4U86 A;  3TC5 A;  4E5R A;  4REX A;  2YSF A;  2LAJ A;  2RE3 A;  1EG3 A;  3CNG A;  4QIB A;  2ZQT A;  1K9R A;  1I5H W;  2ITK A;  2M8I A;  2ZAJ A;  2DMV A;  2M8J A;  2JXW A;  2M3O W;  1TK7 A;  2Q5A A;  5AHT A;  2DJY A;  2XPA A;  2ZR4 A;  3LE4 A;  3NTP A;  2JX8 A;  2YSG A;  2L4J A;  2JMF A;  2MDI A;  3TDB A;  2YSB A;  1EG4 A;  3OOB A;  2XP4 A;  2ZQV A; 
#chains in the Genus database with same CATH topology
 2E45 A;  3WH0 A;  2YSH A;  3ODK A;  1WR7 A;  3MCB B;  2ZQU A;  1WMV A;  3KAF A;  3FSB A;  2EZ5 W;  2JV4 A;  1ZCN A;  2DK7 A;  1F8A B;  4A0U A;  3M85 A;  2XP6 A;  1NMV A;  1JMQ A;  1RP5 A;  3KAB A;  1YW5 A;  3MQH A;  2XP9 A;  2KXQ A;  1O6W A;  2XPB A;  2YSI A;  2XP8 A;  2DWV A;  2ZR6 A;  3KAH A;  3KAD A;  3KCE A;  2ZQS A;  1PIN A;  3KAG A;  2ZR5 A;  4U85 A;  3MCB A;  5E62 A;  2XP7 A;  2XP3 A;  3TCZ A;  4A0T A;  5E5W A;  1K9Q A;  4U84 A;  5CQ2 A;  3M7N A;  2BA1 A;  1FLC A;  2DK1 A;  2XP5 A;  3KAI A;  3L4H A;  2F21 A;  4U86 A;  3TC5 A;  4E5R A;  4REX A;  2YSF A;  2LAJ A;  2RE3 A;  1EG3 A;  3CNG A;  5E64 A;  3FS8 A;  4QIB A;  2ZQT A;  4GLX A;  1K9R A;  2OWO A;  3FSC A;  1I5H W;  2ITK A;  2M8I A;  2WAD A;  2YAJ B;  2ZAJ A;  2DMV A;  2M8J A;  2JXW A;  5E66 A;  2M3O W;  5E65 A;  1TK7 A;  2Q5A A;  5AHT A;  2DJY A;  2WAE A;  2XPA A;  3LKX B;  2ZR4 A;  3MQG A;  5U47 A;  3LE4 A;  3NTP A;  2JX8 A;  2YSG A;  3PQH A;  2L4J A;  2JMF A;  2MDI A;  3TDB A;  2YSB A;  3LKX A;  2QRV A;  1EG4 A;  1TR8 A;  3OOB A;  2XP4 A;  2Y8N B;  2ZQV A; 
#chains in the Genus database with same CATH homology
 2E45 A;  3WH0 A;  2YSH A;  3ODK A;  1WR7 A;  3MCB B;  2ZQU A;  1WMV A;  3KAF A;  3FSB A;  2EZ5 W;  2JV4 A;  1ZCN A;  2DK7 A;  1F8A B;  4A0U A;  3M85 A;  2XP6 A;  1NMV A;  1JMQ A;  1RP5 A;  3KAB A;  1YW5 A;  3MQH A;  2XP9 A;  2KXQ A;  1O6W A;  2XPB A;  2YSI A;  2XP8 A;  2DWV A;  2ZR6 A;  3KAH A;  3KAD A;  3KCE A;  2ZQS A;  1PIN A;  3KAG A;  2ZR5 A;  4U85 A;  3MCB A;  5E62 A;  2XP7 A;  2XP3 A;  3TCZ A;  4A0T A;  5E5W A;  1K9Q A;  4U84 A;  5CQ2 A;  3M7N A;  2BA1 A;  1FLC A;  2DK1 A;  2XP5 A;  3KAI A;  3L4H A;  2F21 A;  4U86 A;  3TC5 A;  4E5R A;  4REX A;  2YSF A;  2LAJ A;  2RE3 A;  1EG3 A;  3CNG A;  5E64 A;  3FS8 A;  4QIB A;  2ZQT A;  4GLX A;  1K9R A;  2OWO A;  3FSC A;  1I5H W;  2ITK A;  2M8I A;  2WAD A;  2YAJ B;  2ZAJ A;  2DMV A;  2M8J A;  2JXW A;  5E66 A;  2M3O W;  5E65 A;  1TK7 A;  2Q5A A;  5AHT A;  2DJY A;  2WAE A;  2XPA A;  3LKX B;  2ZR4 A;  3MQG A;  5U47 A;  3LE4 A;  3NTP A;  2JX8 A;  2YSG A;  3PQH A;  2L4J A;  2JMF A;  2MDI A;  3TDB A;  2YSB A;  3LKX A;  2QRV A;  1EG4 A;  1TR8 A;  3OOB A;  2XP4 A;  2Y8N B;  2ZQV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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