1K9Q | Genus

Total Genus 4

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	4
sequence length	40
structure length	40
Chain Sequence	FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
publication title	Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope. pubmed doi rcsb
molecule keywords	65 kDa Yes-associated protein
total genus	4
structure length	40
sequence length	40
ec nomenclature
pdb deposition date	2001-10-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00397	WW	WW domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.70.10	Mainly Beta	Single Sheet	Ubiquitin Ligase Nedd4; Chain: W;	Ubiquitin Ligase Nedd4; Chain: W;	1k9qA00

3NTPA 2XP9A 3KAHA 2XP6A 2XPAA 1YW5A 3M7NA 2LAJA 3L4HA 2BA1A 3KCEA 2ZR6A 2L4JA 2F21A 2DK1A 2KXQA 2YSFA 1NMVA 3CNGA 2YSBA 3KAFA 3M85A 1WR7A 2MDIA 4U86A 2ZQVA 1I5HW 1ZCNA 2YSGA 1PINA 2YSHA 2ZQSA 2DK7A 2XP5A 4U85A 2Q5AA 2ZR5A 3OOBA 2XP8A 3TDBA 2ZQTA 1EG3A 2M8JA 2ZQUA 2JXWA 4U84A 1F8AB 1O6WA 2EZ5W 2JMFA 2JV4A 2ZR4A 2DJYA 3KAGA 1TK7A 2RE3A 5AHTA 3ODKA 5CQ2A 3TCZA 1EG4A 2XP7A 2M3OW 4REXA 4E5RA 1JMQA 2XP4A 1K9QA 3LE4A 2ZAJA 2DMVA 3KABA 2DWVA 2ITKA 2M8IA 2XP3A 3KADA 1WMVA 2YSIA 3TC5A 4QIBA 2XPBA 2JX8A 1K9RA 3WH0A 3KAIA 2E45A
chains in the Genus database with same CATH superfamily

3NTPA 2XP9A 3KAHA 1FLCA 2XP6A 4A0TA 2XPAA 3MCBA 1YW5A 3M7NA 2LAJA 3L4HA 2BA1A 3KCEA 3LKXB 2ZR6A 2L4JA 5U47A 2F21A 2DK1A 3PQHA 1TR8A 2KXQA 2YSFA 1NMVA 3CNGA 2YSBA 3KAFA 3M85A 1WR7A 2MDIA 3FSBA 4U86A 2ZQVA 1I5HW 1ZCNA 2YSGA 1PINA 2YSHA 2ZQSA 2DK7A 2XP5A 3FS8A 2Q5AA 4U85A 2ZR5A 5E66A 5E5WA 3OOBA 2XP8A 3TDBA 2ZQTA 1EG3A 2M8JA 2OWOA 2ZQUA 2JXWA 3LKXA 4U84A 1F8AB 1O6WA 2EZ5W 2JMFA 2QRVA 3MQGA 2JV4A 5E65A 2ZR4A 2DJYA 3KAGA 1TK7A 2RE3A 5AHTA 2YAJB 5E62A 3ODKA 5CQ2A 3TCZA 1EG4A 2XP7A 2M3OW 5E64A 4REXA 4E5RA 1JMQA 2XP4A 1K9QA 3LE4A 3MCBB 2ZAJA 3FSCA 4A0UA 3MQHA 2DMVA 3KABA 2DWVA 2ITKA 2M8IA 2XP3A 3KADA 1WMVA 1RP5A 2Y8NB 2YSIA 3TC5A 4GLXA 4QIBA 2XPBA 2JX8A 2WADA 1K9RA 3WH0A 3KAIA 2WAEA 2E45A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3NTP A;  2XP9 A;  3KAH A;  2XP6 A;  2XPA A;  1YW5 A;  3M7N A;  2LAJ A;  3L4H A;  2BA1 A;  3KCE A;  2ZR6 A;  2L4J A;  2F21 A;  2DK1 A;  2KXQ A;  2YSF A;  1NMV A;  3CNG A;  2YSB A;  3KAF A;  3M85 A;  1WR7 A;  2MDI A;  4U86 A;  2ZQV A;  1I5H W;  1ZCN A;  2YSG A;  1PIN A;  2YSH A;  2ZQS A;  2DK7 A;  2XP5 A;  4U85 A;  2Q5A A;  2ZR5 A;  3OOB A;  2XP8 A;  3TDB A;  2ZQT A;  1EG3 A;  2M8J A;  2ZQU A;  2JXW A;  4U84 A;  1F8A B;  1O6W A;  2EZ5 W;  2JMF A;  2JV4 A;  2ZR4 A;  2DJY A;  3KAG A;  1TK7 A;  2RE3 A;  5AHT A;  3ODK A;  5CQ2 A;  3TCZ A;  1EG4 A;  2XP7 A;  2M3O W;  4REX A;  4E5R A;  1JMQ A;  2XP4 A;  1K9Q A;  3LE4 A;  2ZAJ A;  2DMV A;  3KAB A;  2DWV A;  2ITK A;  2M8I A;  2XP3 A;  3KAD A;  1WMV A;  2YSI A;  3TC5 A;  4QIB A;  2XPB A;  2JX8 A;  1K9R A;  3WH0 A;  3KAI A;  2E45 A; 
#chains in the Genus database with same CATH topology
 3NTP A;  2XP9 A;  3KAH A;  1FLC A;  2XP6 A;  4A0T A;  2XPA A;  3MCB A;  1YW5 A;  3M7N A;  2LAJ A;  3L4H A;  2BA1 A;  3KCE A;  3LKX B;  2ZR6 A;  2L4J A;  5U47 A;  2F21 A;  2DK1 A;  3PQH A;  1TR8 A;  2KXQ A;  2YSF A;  1NMV A;  3CNG A;  2YSB A;  3KAF A;  3M85 A;  1WR7 A;  2MDI A;  3FSB A;  4U86 A;  2ZQV A;  1I5H W;  1ZCN A;  2YSG A;  1PIN A;  2YSH A;  2ZQS A;  2DK7 A;  2XP5 A;  3FS8 A;  2Q5A A;  4U85 A;  2ZR5 A;  5E66 A;  5E5W A;  3OOB A;  2XP8 A;  3TDB A;  2ZQT A;  1EG3 A;  2M8J A;  2OWO A;  2ZQU A;  2JXW A;  3LKX A;  4U84 A;  1F8A B;  1O6W A;  2EZ5 W;  2JMF A;  2QRV A;  3MQG A;  2JV4 A;  5E65 A;  2ZR4 A;  2DJY A;  3KAG A;  1TK7 A;  2RE3 A;  5AHT A;  2YAJ B;  5E62 A;  3ODK A;  5CQ2 A;  3TCZ A;  1EG4 A;  2XP7 A;  2M3O W;  5E64 A;  4REX A;  4E5R A;  1JMQ A;  2XP4 A;  1K9Q A;  3LE4 A;  3MCB B;  2ZAJ A;  3FSC A;  4A0U A;  3MQH A;  2DMV A;  3KAB A;  2DWV A;  2ITK A;  2M8I A;  2XP3 A;  3KAD A;  1WMV A;  1RP5 A;  2Y8N B;  2YSI A;  3TC5 A;  4GLX A;  4QIB A;  2XPB A;  2JX8 A;  2WAD A;  1K9R A;  3WH0 A;  3KAI A;  2WAE A;  2E45 A; 
#chains in the Genus database with same CATH homology
 3NTP A;  2XP9 A;  3KAH A;  1FLC A;  2XP6 A;  4A0T A;  2XPA A;  3MCB A;  1YW5 A;  3M7N A;  2LAJ A;  3L4H A;  2BA1 A;  3KCE A;  3LKX B;  2ZR6 A;  2L4J A;  5U47 A;  2F21 A;  2DK1 A;  3PQH A;  1TR8 A;  2KXQ A;  2YSF A;  1NMV A;  3CNG A;  2YSB A;  3KAF A;  3M85 A;  1WR7 A;  2MDI A;  3FSB A;  4U86 A;  2ZQV A;  1I5H W;  1ZCN A;  2YSG A;  1PIN A;  2YSH A;  2ZQS A;  2DK7 A;  2XP5 A;  3FS8 A;  2Q5A A;  4U85 A;  2ZR5 A;  5E66 A;  5E5W A;  3OOB A;  2XP8 A;  3TDB A;  2ZQT A;  1EG3 A;  2M8J A;  2OWO A;  2ZQU A;  2JXW A;  3LKX A;  4U84 A;  1F8A B;  1O6W A;  2EZ5 W;  2JMF A;  2QRV A;  3MQG A;  2JV4 A;  5E65 A;  2ZR4 A;  2DJY A;  3KAG A;  1TK7 A;  2RE3 A;  5AHT A;  2YAJ B;  5E62 A;  3ODK A;  5CQ2 A;  3TCZ A;  1EG4 A;  2XP7 A;  2M3O W;  5E64 A;  4REX A;  4E5R A;  1JMQ A;  2XP4 A;  1K9Q A;  3LE4 A;  3MCB B;  2ZAJ A;  3FSC A;  4A0U A;  3MQH A;  2DMV A;  3KAB A;  2DWV A;  2ITK A;  2M8I A;  2XP3 A;  3KAD A;  1WMV A;  1RP5 A;  2Y8N B;  2YSI A;  3TC5 A;  4GLX A;  4QIB A;  2XPB A;  2JX8 A;  2WAD A;  1K9R A;  3WH0 A;  3KAI A;  2WAE A;  2E45 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1K9QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations