1K9RA

Yap65 ww domain complexed to acetyl-plppy
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
40
structure length
40
Chain Sequence
FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
publication title Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope.
pubmed doi rcsb
molecule keywords 65 kDa Yes-associated protein
total genus 3
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2001-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1k9rA00
3KAHA 5CQ2A 2EZ5W 1EG3A 2XP9A 2L4JA 4REXA 2DK7A 2YSFA 2XP8A 3CNGA 2Q5AA 2XPBA 2YSBA 3NTPA 2JXWA 3WH0A 2BA1A 2M3OW 3TC5A 1PINA 4QIBA 2F21A 2ZQVA 3LE4A 2XP5A 2DWVA 2XP4A 2ZQUA 2XP6A 1K9QA 4E5RA 2YSGA 2ZQSA 1YW5A 2ITKA 4U86A 3M7NA 2ZQTA 2DK1A 2RE3A 1ZCNA 1WR7A 2DJYA 3KAIA 3KABA 4U85A 2M8JA 2ZAJA 2ZR5A 2E45A 4U84A 1TK7A 3KAGA 3TCZA 3L4HA 5AHTA 2JMFA 2M8IA 1EG4A 2YSHA 3M85A 2LAJA 2JV4A 3ODKA 1K9RA 2JX8A 1I5HW 2ZR6A 2ZR4A 3TDBA 2XP7A 2XP3A 2DMVA 1NMVA 1JMQA 2YSIA 2MDIA 3KCEA 3OOBA 1WMVA 1F8AB 1O6WA 2XPAA 3KADA 2KXQA 3KAFA
chains in the Genus database with same CATH superfamily
3KAHA 5CQ2A 3MCBB 2EZ5W 1EG3A 5U47A 5E5WA 2XP9A 2L4JA 4REXA 3MCBA 2DK7A 2YSFA 2XP8A 3CNGA 2Q5AA 2XPBA 4GLXA 2YSBA 3NTPA 2JXWA 3WH0A 2BA1A 2M3OW 3FSCA 3TC5A 1PINA 4QIBA 2F21A 5E64A 2ZQVA 2QRVA 3LE4A 2XP5A 2DWVA 2XP4A 2ZQUA 2XP6A 4A0TA 4A0UA 1K9QA 4E5RA 5E62A 2YSGA 2ZQSA 1YW5A 2ITKA 1TR8A 4U86A 3M7NA 3PQHA 2ZQTA 2DK1A 2RE3A 1ZCNA 1WR7A 2DJYA 3KAIA 3KABA 1FLCA 4U85A 2M8JA 2ZAJA 2ZR5A 2E45A 4U84A 1TK7A 3KAGA 3TCZA 3L4HA 5AHTA 2JMFA 2M8IA 2OWOA 1EG4A 2YSHA 2YAJB 3LKXB 3M85A 3MQHA 2LAJA 2JV4A 3ODKA 1K9RA 2JX8A 2WADA 1I5HW 3MQGA 3LKXA 2ZR6A 2ZR4A 3TDBA 2XP7A 2XP3A 5E65A 2DMVA 3FSBA 1NMVA 2Y8NB 1JMQA 2YSIA 2MDIA 3KCEA 3OOBA 1RP5A 5E66A 1WMVA 3FS8A 1F8AB 1O6WA 2XPAA 2WAEA 3KADA 2KXQA 3KAFA
chains in the Genus database with same CATH topology
3KAHA 5CQ2A 3MCBB 2EZ5W 1EG3A 5U47A 5E5WA 2XP9A 2L4JA 4REXA 3MCBA 2DK7A 2YSFA 2XP8A 3CNGA 2Q5AA 2XPBA 4GLXA 2YSBA 3NTPA 2JXWA 3WH0A 2BA1A 2M3OW 3FSCA 3TC5A 1PINA 4QIBA 2F21A 5E64A 2ZQVA 2QRVA 3LE4A 2XP5A 2DWVA 2XP4A 2ZQUA 2XP6A 4A0TA 4A0UA 1K9QA 4E5RA 5E62A 2YSGA 2ZQSA 1YW5A 2ITKA 1TR8A 4U86A 3M7NA 3PQHA 2ZQTA 2DK1A 2RE3A 1ZCNA 1WR7A 2DJYA 3KAIA 3KABA 1FLCA 4U85A 2M8JA 2ZAJA 2ZR5A 2E45A 4U84A 1TK7A 3KAGA 3TCZA 3L4HA 5AHTA 2JMFA 2M8IA 2OWOA 1EG4A 2YSHA 2YAJB 3LKXB 3M85A 3MQHA 2LAJA 2JV4A 3ODKA 1K9RA 2JX8A 2WADA 1I5HW 3MQGA 3LKXA 2ZR6A 2ZR4A 3TDBA 2XP7A 2XP3A 5E65A 2DMVA 3FSBA 1NMVA 2Y8NB 1JMQA 2YSIA 2MDIA 3KCEA 3OOBA 1RP5A 5E66A 1WMVA 3FS8A 1F8AB 1O6WA 2XPAA 2WAEA 3KADA 2KXQA 3KAFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KAH A;  5CQ2 A;  2EZ5 W;  1EG3 A;  2XP9 A;  2L4J A;  4REX A;  2DK7 A;  2YSF A;  2XP8 A;  3CNG A;  2Q5A A;  2XPB A;  2YSB A;  3NTP A;  2JXW A;  3WH0 A;  2BA1 A;  2M3O W;  3TC5 A;  1PIN A;  4QIB A;  2F21 A;  2ZQV A;  3LE4 A;  2XP5 A;  2DWV A;  2XP4 A;  2ZQU A;  2XP6 A;  1K9Q A;  4E5R A;  2YSG A;  2ZQS A;  1YW5 A;  2ITK A;  4U86 A;  3M7N A;  2ZQT A;  2DK1 A;  2RE3 A;  1ZCN A;  1WR7 A;  2DJY A;  3KAI A;  3KAB A;  4U85 A;  2M8J A;  2ZAJ A;  2ZR5 A;  2E45 A;  4U84 A;  1TK7 A;  3KAG A;  3TCZ A;  3L4H A;  5AHT A;  2JMF A;  2M8I A;  1EG4 A;  2YSH A;  3M85 A;  2LAJ A;  2JV4 A;  3ODK A;  1K9R A;  2JX8 A;  1I5H W;  2ZR6 A;  2ZR4 A;  3TDB A;  2XP7 A;  2XP3 A;  2DMV A;  1NMV A;  1JMQ A;  2YSI A;  2MDI A;  3KCE A;  3OOB A;  1WMV A;  1F8A B;  1O6W A;  2XPA A;  3KAD A;  2KXQ A;  3KAF A; 
#chains in the Genus database with same CATH topology
 3KAH A;  5CQ2 A;  3MCB B;  2EZ5 W;  1EG3 A;  5U47 A;  5E5W A;  2XP9 A;  2L4J A;  4REX A;  3MCB A;  2DK7 A;  2YSF A;  2XP8 A;  3CNG A;  2Q5A A;  2XPB A;  4GLX A;  2YSB A;  3NTP A;  2JXW A;  3WH0 A;  2BA1 A;  2M3O W;  3FSC A;  3TC5 A;  1PIN A;  4QIB A;  2F21 A;  5E64 A;  2ZQV A;  2QRV A;  3LE4 A;  2XP5 A;  2DWV A;  2XP4 A;  2ZQU A;  2XP6 A;  4A0T A;  4A0U A;  1K9Q A;  4E5R A;  5E62 A;  2YSG A;  2ZQS A;  1YW5 A;  2ITK A;  1TR8 A;  4U86 A;  3M7N A;  3PQH A;  2ZQT A;  2DK1 A;  2RE3 A;  1ZCN A;  1WR7 A;  2DJY A;  3KAI A;  3KAB A;  1FLC A;  4U85 A;  2M8J A;  2ZAJ A;  2ZR5 A;  2E45 A;  4U84 A;  1TK7 A;  3KAG A;  3TCZ A;  3L4H A;  5AHT A;  2JMF A;  2M8I A;  2OWO A;  1EG4 A;  2YSH A;  2YAJ B;  3LKX B;  3M85 A;  3MQH A;  2LAJ A;  2JV4 A;  3ODK A;  1K9R A;  2JX8 A;  2WAD A;  1I5H W;  3MQG A;  3LKX A;  2ZR6 A;  2ZR4 A;  3TDB A;  2XP7 A;  2XP3 A;  5E65 A;  2DMV A;  3FSB A;  1NMV A;  2Y8N B;  1JMQ A;  2YSI A;  2MDI A;  3KCE A;  3OOB A;  1RP5 A;  5E66 A;  1WMV A;  3FS8 A;  1F8A B;  1O6W A;  2XPA A;  2WAE A;  3KAD A;  2KXQ A;  3KAF A; 
#chains in the Genus database with same CATH homology
 3KAH A;  5CQ2 A;  3MCB B;  2EZ5 W;  1EG3 A;  5U47 A;  5E5W A;  2XP9 A;  2L4J A;  4REX A;  3MCB A;  2DK7 A;  2YSF A;  2XP8 A;  3CNG A;  2Q5A A;  2XPB A;  4GLX A;  2YSB A;  3NTP A;  2JXW A;  3WH0 A;  2BA1 A;  2M3O W;  3FSC A;  3TC5 A;  1PIN A;  4QIB A;  2F21 A;  5E64 A;  2ZQV A;  2QRV A;  3LE4 A;  2XP5 A;  2DWV A;  2XP4 A;  2ZQU A;  2XP6 A;  4A0T A;  4A0U A;  1K9Q A;  4E5R A;  5E62 A;  2YSG A;  2ZQS A;  1YW5 A;  2ITK A;  1TR8 A;  4U86 A;  3M7N A;  3PQH A;  2ZQT A;  2DK1 A;  2RE3 A;  1ZCN A;  1WR7 A;  2DJY A;  3KAI A;  3KAB A;  1FLC A;  4U85 A;  2M8J A;  2ZAJ A;  2ZR5 A;  2E45 A;  4U84 A;  1TK7 A;  3KAG A;  3TCZ A;  3L4H A;  5AHT A;  2JMF A;  2M8I A;  2OWO A;  1EG4 A;  2YSH A;  2YAJ B;  3LKX B;  3M85 A;  3MQH A;  2LAJ A;  2JV4 A;  3ODK A;  1K9R A;  2JX8 A;  2WAD A;  1I5H W;  3MQG A;  3LKX A;  2ZR6 A;  2ZR4 A;  3TDB A;  2XP7 A;  2XP3 A;  5E65 A;  2DMV A;  3FSB A;  1NMV A;  2Y8N B;  1JMQ A;  2YSI A;  2MDI A;  3KCE A;  3OOB A;  1RP5 A;  5E66 A;  1WMV A;  3FS8 A;  1F8A B;  1O6W A;  2XPA A;  2WAE A;  3KAD A;  2KXQ A;  3KAF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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