1O6WA

Solution structure of the prp40 ww domain pair of the yeast splicing factor prp40
Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
75
structure length
75
Chain Sequence
MSIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFEKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (18-21)TI1 (9-12)S2 (14-18)S3 (24-25)TI3 (50-53)S5 (55-59)TI4 (59-62)S1 (4-8)S4 (46-49)S6 (64-66)AH1 (30-43)Updating...
connected with : NaN
molecule tags Nuclear protein
source organism Saccharomyces cerevisiae
publication title Solution Structure and Ligand Recognition of the Ww Domain Pair of the Yeast Splicing Factor Prp40
pubmed doi rcsb
molecule keywords PRE-MRNA PROCESSING PROTEIN PRP40
total genus 9
structure length 75
sequence length 75
ec nomenclature
pdb deposition date 2002-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1o6wA02
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1o6wA01
2M8JA 2ZQVA 3ODKA 3TCZA 2ITKA 4U86A 2MDIA 3LE4A 2DMVA 1TK7A 2ZAJA 1PINA 1O6WA 3CNGA 2M3OW 3KAFA 3TC5A 2XP7A 2YSFA 2YSBA 3M7NA 2EZ5W 4U85A 2M8IA 3KCEA 2XPBA 2XP8A 5CQ2A 3KABA 2JXWA 1K9QA 2YSGA 2E45A 2XP4A 2L4JA 2XP5A 2XP3A 3TDBA 2JX8A 2JMFA 2Q5AA 1ZCNA 3NTPA 4QIBA 2ZR5A 2YSHA 2BA1A 2JV4A 2ZQTA 2ZR4A 2DK1A 1NMVA 2DWVA 4E5RA 1I5HW 1JMQA 1EG3A 1K9RA 3OOBA 2XP9A 2YSIA 3WH0A 2DK7A 2ZQUA 3M85A 2F21A 2KXQA 2XP6A 2XPAA 2ZQSA 2LAJA 2RE3A 2ZR6A 3KAGA 5AHTA 4REXA 1F8AB 1EG4A 4U84A 3KAIA 3L4HA 3KADA 1YW5A 1WR7A 2DJYA 3KAHA 1WMVA
chains in the Genus database with same CATH superfamily
2M8JA 3FSCA 2ZQVA 3ODKA 5E65A 3TCZA 2ITKA 3MQHA 4U86A 5E5WA 4A0TA 2MDIA 2WAEA 3LE4A 2DMVA 1TK7A 2ZAJA 1PINA 1O6WA 3CNGA 2M3OW 3KAFA 1FLCA 3TC5A 2OWOA 2XP7A 4A0UA 2YSFA 2YSBA 3M7NA 2EZ5W 5E64A 5U47A 4U85A 2M8IA 3KCEA 2XPBA 3MCBA 2XP8A 1RP5A 5CQ2A 5E66A 3MCBB 3KABA 2JXWA 1K9QA 2YSGA 2YAJB 2E45A 2XP4A 2L4JA 2XP5A 2XP3A 3TDBA 2JX8A 2JMFA 2Q5AA 1ZCNA 3NTPA 4QIBA 2ZR5A 2YSHA 3FS8A 2BA1A 2JV4A 2ZQTA 2ZR4A 3LKXB 2DK1A 1NMVA 1TR8A 4GLXA 2DWVA 5E62A 4E5RA 1I5HW 2Y8NB 1JMQA 1EG3A 1K9RA 3OOBA 3LKXA 2XP9A 2YSIA 3WH0A 2DK7A 2ZQUA 3M85A 2F21A 2KXQA 2XP6A 2XPAA 2ZQSA 2LAJA 2RE3A 2ZR6A 3KAGA 5AHTA 4REXA 1F8AB 1EG4A 4U84A 3KAIA 3L4HA 3KADA 2QRVA 3MQGA 1YW5A 3FSBA 1WR7A 2DJYA 3KAHA 3PQHA 1WMVA 2WADA
chains in the Genus database with same CATH topology
2M8JA 3FSCA 2ZQVA 3ODKA 5E65A 3TCZA 2ITKA 3MQHA 4U86A 5E5WA 4A0TA 2MDIA 2WAEA 3LE4A 2DMVA 1TK7A 2ZAJA 1PINA 1O6WA 3CNGA 2M3OW 3KAFA 1FLCA 3TC5A 2OWOA 2XP7A 4A0UA 2YSFA 2YSBA 3M7NA 2EZ5W 5E64A 5U47A 4U85A 2M8IA 3KCEA 2XPBA 3MCBA 2XP8A 1RP5A 5CQ2A 5E66A 3MCBB 3KABA 2JXWA 1K9QA 2YSGA 2YAJB 2E45A 2XP4A 2L4JA 2XP5A 2XP3A 3TDBA 2JX8A 2JMFA 2Q5AA 1ZCNA 3NTPA 4QIBA 2ZR5A 2YSHA 3FS8A 2BA1A 2JV4A 2ZQTA 2ZR4A 3LKXB 2DK1A 1NMVA 1TR8A 4GLXA 2DWVA 5E62A 4E5RA 1I5HW 2Y8NB 1JMQA 1EG3A 1K9RA 3OOBA 3LKXA 2XP9A 2YSIA 3WH0A 2DK7A 2ZQUA 3M85A 2F21A 2KXQA 2XP6A 2XPAA 2ZQSA 2LAJA 2RE3A 2ZR6A 3KAGA 5AHTA 4REXA 1F8AB 1EG4A 4U84A 3KAIA 3L4HA 3KADA 2QRVA 3MQGA 1YW5A 3FSBA 1WR7A 2DJYA 3KAHA 3PQHA 1WMVA 2WADA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M8J A;  2ZQV A;  3ODK A;  3TCZ A;  2ITK A;  4U86 A;  2MDI A;  3LE4 A;  2DMV A;  1TK7 A;  2ZAJ A;  1PIN A;  1O6W A;  3CNG A;  2M3O W;  3KAF A;  3TC5 A;  2XP7 A;  2YSF A;  2YSB A;  3M7N A;  2EZ5 W;  4U85 A;  2M8I A;  3KCE A;  2XPB A;  2XP8 A;  5CQ2 A;  3KAB A;  2JXW A;  1K9Q A;  2YSG A;  2E45 A;  2XP4 A;  2L4J A;  2XP5 A;  2XP3 A;  3TDB A;  2JX8 A;  2JMF A;  2Q5A A;  1ZCN A;  3NTP A;  4QIB A;  2ZR5 A;  2YSH A;  2BA1 A;  2JV4 A;  2ZQT A;  2ZR4 A;  2DK1 A;  1NMV A;  2DWV A;  4E5R A;  1I5H W;  1JMQ A;  1EG3 A;  1K9R A;  3OOB A;  2XP9 A;  2YSI A;  3WH0 A;  2DK7 A;  2ZQU A;  3M85 A;  2F21 A;  2KXQ A;  2XP6 A;  2XPA A;  2ZQS A;  2LAJ A;  2RE3 A;  2ZR6 A;  3KAG A;  5AHT A;  4REX A;  1F8A B;  1EG4 A;  4U84 A;  3KAI A;  3L4H A;  3KAD A;  1YW5 A;  1WR7 A;  2DJY A;  3KAH A;  1WMV A; 
#chains in the Genus database with same CATH topology
 2M8J A;  3FSC A;  2ZQV A;  3ODK A;  5E65 A;  3TCZ A;  2ITK A;  3MQH A;  4U86 A;  5E5W A;  4A0T A;  2MDI A;  2WAE A;  3LE4 A;  2DMV A;  1TK7 A;  2ZAJ A;  1PIN A;  1O6W A;  3CNG A;  2M3O W;  3KAF A;  1FLC A;  3TC5 A;  2OWO A;  2XP7 A;  4A0U A;  2YSF A;  2YSB A;  3M7N A;  2EZ5 W;  5E64 A;  5U47 A;  4U85 A;  2M8I A;  3KCE A;  2XPB A;  3MCB A;  2XP8 A;  1RP5 A;  5CQ2 A;  5E66 A;  3MCB B;  3KAB A;  2JXW A;  1K9Q A;  2YSG A;  2YAJ B;  2E45 A;  2XP4 A;  2L4J A;  2XP5 A;  2XP3 A;  3TDB A;  2JX8 A;  2JMF A;  2Q5A A;  1ZCN A;  3NTP A;  4QIB A;  2ZR5 A;  2YSH A;  3FS8 A;  2BA1 A;  2JV4 A;  2ZQT A;  2ZR4 A;  3LKX B;  2DK1 A;  1NMV A;  1TR8 A;  4GLX A;  2DWV A;  5E62 A;  4E5R A;  1I5H W;  2Y8N B;  1JMQ A;  1EG3 A;  1K9R A;  3OOB A;  3LKX A;  2XP9 A;  2YSI A;  3WH0 A;  2DK7 A;  2ZQU A;  3M85 A;  2F21 A;  2KXQ A;  2XP6 A;  2XPA A;  2ZQS A;  2LAJ A;  2RE3 A;  2ZR6 A;  3KAG A;  5AHT A;  4REX A;  1F8A B;  1EG4 A;  4U84 A;  3KAI A;  3L4H A;  3KAD A;  2QRV A;  3MQG A;  1YW5 A;  3FSB A;  1WR7 A;  2DJY A;  3KAH A;  3PQH A;  1WMV A;  2WAD A; 
#chains in the Genus database with same CATH homology
 2M8J A;  3FSC A;  2ZQV A;  3ODK A;  5E65 A;  3TCZ A;  2ITK A;  3MQH A;  4U86 A;  5E5W A;  4A0T A;  2MDI A;  2WAE A;  3LE4 A;  2DMV A;  1TK7 A;  2ZAJ A;  1PIN A;  1O6W A;  3CNG A;  2M3O W;  3KAF A;  1FLC A;  3TC5 A;  2OWO A;  2XP7 A;  4A0U A;  2YSF A;  2YSB A;  3M7N A;  2EZ5 W;  5E64 A;  5U47 A;  4U85 A;  2M8I A;  3KCE A;  2XPB A;  3MCB A;  2XP8 A;  1RP5 A;  5CQ2 A;  5E66 A;  3MCB B;  3KAB A;  2JXW A;  1K9Q A;  2YSG A;  2YAJ B;  2E45 A;  2XP4 A;  2L4J A;  2XP5 A;  2XP3 A;  3TDB A;  2JX8 A;  2JMF A;  2Q5A A;  1ZCN A;  3NTP A;  4QIB A;  2ZR5 A;  2YSH A;  3FS8 A;  2BA1 A;  2JV4 A;  2ZQT A;  2ZR4 A;  3LKX B;  2DK1 A;  1NMV A;  1TR8 A;  4GLX A;  2DWV A;  5E62 A;  4E5R A;  1I5H W;  2Y8N B;  1JMQ A;  1EG3 A;  1K9R A;  3OOB A;  3LKX A;  2XP9 A;  2YSI A;  3WH0 A;  2DK7 A;  2ZQU A;  3M85 A;  2F21 A;  2KXQ A;  2XP6 A;  2XPA A;  2ZQS A;  2LAJ A;  2RE3 A;  2ZR6 A;  3KAG A;  5AHT A;  4REX A;  1F8A B;  1EG4 A;  4U84 A;  3KAI A;  3L4H A;  3KAD A;  2QRV A;  3MQG A;  1YW5 A;  3FSB A;  1WR7 A;  2DJY A;  3KAH A;  3PQH A;  1WMV A;  2WAD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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