1O6WA

Solution structure of the prp40 ww domain pair of the yeast splicing factor prp40
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
75
structure length
75
Chain Sequence
MSIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution Structure and Ligand Recognition of the Ww Domain Pair of the Yeast Splicing Factor Prp40
pubmed doi rcsb
molecule tags Nuclear protein
source organism Saccharomyces cerevisiae
molecule keywords PRE-MRNA PROCESSING PROTEIN PRP40
total genus 9
structure length 75
sequence length 75
ec nomenclature
pdb deposition date 2002-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1o6wA02
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1o6wA01
1JMQA 4U85A 2XP8A 2DJYA 3KABA 3OOBA 2ZQUA 2F21A 2ZQTA 2YSFA 3LE4A 2ZR4A 2XP5A 2YSBA 2ZQVA 4QIBA 2DWVA 3M7NA 5CQ2A 1K9QA 3KAFA 3KAIA 2YSGA 2RE3A 1F8AB 1NMVA 2M3OW 1EG3A 4U86A 1K9RA 4U84A 2JX8A 1WMVA 3KADA 2BA1A 2EZ5W 1TK7A 3CNGA 2XP4A 3NTPA 2ITKA 2DMVA 2ZQSA 1PINA 2ZR6A 1WR7A 2ZAJA 2E45A 2YSHA 3ODKA 2XP3A 2XP9A 2M8JA 3TDBA 3M85A 3WH0A 3L4HA 2XPAA 4REXA 2XPBA 2DK1A 2Q5AA 2MDIA 2XP7A 4E5RA 3KAGA 2L4JA 3TC5A 2KXQA 2YSIA 3TCZA 1YW5A 1EG4A 2XP6A 1I5HW 3KAHA 2JV4A 2ZR5A 1O6WA 3KCEA 5AHTA 2M8IA 2JXWA 2LAJA 2JMFA 2DK7A 1ZCNA
chains in the Genus database with same CATH superfamily
1JMQA 1RP5A 4U85A 2WAEA 2XP8A 2DJYA 3KABA 3OOBA 2ZQUA 2F21A 2ZQTA 2YSFA 3LE4A 2ZR4A 2XP5A 2YSBA 5E5WA 2ZQVA 4QIBA 3FS8A 2DWVA 3M7NA 3MCBB 5CQ2A 1K9QA 3KAFA 3MCBA 3KAIA 2YSGA 2RE3A 2YAJB 1F8AB 1NMVA 2M3OW 3FSBA 2WADA 1EG3A 4U86A 1K9RA 4U84A 2JX8A 2QRVA 1WMVA 3KADA 2BA1A 4A0TA 2EZ5W 3PQHA 5E62A 1TK7A 3CNGA 1TR8A 2XP4A 3FSCA 5E64A 2ITKA 3NTPA 2DMVA 3MQGA 2ZQSA 1PINA 2ZR6A 1WR7A 2ZAJA 2E45A 2YSHA 3ODKA 2XP3A 2XP9A 2M8JA 3TDBA 3M85A 2OWOA 3WH0A 3L4HA 2XPAA 4REXA 2XPBA 2DK1A 2Q5AA 2MDIA 2Y8NB 5E65A 2XP7A 4E5RA 1FLCA 4A0UA 3LKXB 3KAGA 3LKXA 2L4JA 3TC5A 2KXQA 2YSIA 4GLXA 3TCZA 1YW5A 1EG4A 2XP6A 1I5HW 3KAHA 2JV4A 3MQHA 2ZR5A 1O6WA 5U47A 3KCEA 5AHTA 2M8IA 2JXWA 2LAJA 2JMFA 2DK7A 5E66A 1ZCNA
chains in the Genus database with same CATH topology
1JMQA 1RP5A 4U85A 2WAEA 2XP8A 2DJYA 3KABA 3OOBA 2ZQUA 2F21A 2ZQTA 2YSFA 3LE4A 2ZR4A 2XP5A 2YSBA 5E5WA 2ZQVA 4QIBA 3FS8A 2DWVA 3M7NA 3MCBB 5CQ2A 1K9QA 3KAFA 3MCBA 3KAIA 2YSGA 2RE3A 2YAJB 1F8AB 1NMVA 2M3OW 3FSBA 2WADA 1EG3A 4U86A 1K9RA 4U84A 2JX8A 2QRVA 1WMVA 3KADA 2BA1A 4A0TA 2EZ5W 3PQHA 5E62A 1TK7A 3CNGA 1TR8A 2XP4A 3FSCA 5E64A 2ITKA 3NTPA 2DMVA 3MQGA 2ZQSA 1PINA 2ZR6A 1WR7A 2ZAJA 2E45A 2YSHA 3ODKA 2XP3A 2XP9A 2M8JA 3TDBA 3M85A 2OWOA 3WH0A 3L4HA 2XPAA 4REXA 2XPBA 2DK1A 2Q5AA 2MDIA 2Y8NB 5E65A 2XP7A 4E5RA 1FLCA 4A0UA 3LKXB 3KAGA 3LKXA 2L4JA 3TC5A 2KXQA 2YSIA 4GLXA 3TCZA 1YW5A 1EG4A 2XP6A 1I5HW 3KAHA 2JV4A 3MQHA 2ZR5A 1O6WA 5U47A 3KCEA 5AHTA 2M8IA 2JXWA 2LAJA 2JMFA 2DK7A 5E66A 1ZCNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JMQ A;  4U85 A;  2XP8 A;  2DJY A;  3KAB A;  3OOB A;  2ZQU A;  2F21 A;  2ZQT A;  2YSF A;  3LE4 A;  2ZR4 A;  2XP5 A;  2YSB A;  2ZQV A;  4QIB A;  2DWV A;  3M7N A;  5CQ2 A;  1K9Q A;  3KAF A;  3KAI A;  2YSG A;  2RE3 A;  1F8A B;  1NMV A;  2M3O W;  1EG3 A;  4U86 A;  1K9R A;  4U84 A;  2JX8 A;  1WMV A;  3KAD A;  2BA1 A;  2EZ5 W;  1TK7 A;  3CNG A;  2XP4 A;  3NTP A;  2ITK A;  2DMV A;  2ZQS A;  1PIN A;  2ZR6 A;  1WR7 A;  2ZAJ A;  2E45 A;  2YSH A;  3ODK A;  2XP3 A;  2XP9 A;  2M8J A;  3TDB A;  3M85 A;  3WH0 A;  3L4H A;  2XPA A;  4REX A;  2XPB A;  2DK1 A;  2Q5A A;  2MDI A;  2XP7 A;  4E5R A;  3KAG A;  2L4J A;  3TC5 A;  2KXQ A;  2YSI A;  3TCZ A;  1YW5 A;  1EG4 A;  2XP6 A;  1I5H W;  3KAH A;  2JV4 A;  2ZR5 A;  1O6W A;  3KCE A;  5AHT A;  2M8I A;  2JXW A;  2LAJ A;  2JMF A;  2DK7 A;  1ZCN A; 
#chains in the Genus database with same CATH topology
 1JMQ A;  1RP5 A;  4U85 A;  2WAE A;  2XP8 A;  2DJY A;  3KAB A;  3OOB A;  2ZQU A;  2F21 A;  2ZQT A;  2YSF A;  3LE4 A;  2ZR4 A;  2XP5 A;  2YSB A;  5E5W A;  2ZQV A;  4QIB A;  3FS8 A;  2DWV A;  3M7N A;  3MCB B;  5CQ2 A;  1K9Q A;  3KAF A;  3MCB A;  3KAI A;  2YSG A;  2RE3 A;  2YAJ B;  1F8A B;  1NMV A;  2M3O W;  3FSB A;  2WAD A;  1EG3 A;  4U86 A;  1K9R A;  4U84 A;  2JX8 A;  2QRV A;  1WMV A;  3KAD A;  2BA1 A;  4A0T A;  2EZ5 W;  3PQH A;  5E62 A;  1TK7 A;  3CNG A;  1TR8 A;  2XP4 A;  3FSC A;  5E64 A;  2ITK A;  3NTP A;  2DMV A;  3MQG A;  2ZQS A;  1PIN A;  2ZR6 A;  1WR7 A;  2ZAJ A;  2E45 A;  2YSH A;  3ODK A;  2XP3 A;  2XP9 A;  2M8J A;  3TDB A;  3M85 A;  2OWO A;  3WH0 A;  3L4H A;  2XPA A;  4REX A;  2XPB A;  2DK1 A;  2Q5A A;  2MDI A;  2Y8N B;  5E65 A;  2XP7 A;  4E5R A;  1FLC A;  4A0U A;  3LKX B;  3KAG A;  3LKX A;  2L4J A;  3TC5 A;  2KXQ A;  2YSI A;  4GLX A;  3TCZ A;  1YW5 A;  1EG4 A;  2XP6 A;  1I5H W;  3KAH A;  2JV4 A;  3MQH A;  2ZR5 A;  1O6W A;  5U47 A;  3KCE A;  5AHT A;  2M8I A;  2JXW A;  2LAJ A;  2JMF A;  2DK7 A;  5E66 A;  1ZCN A; 
#chains in the Genus database with same CATH homology
 1JMQ A;  1RP5 A;  4U85 A;  2WAE A;  2XP8 A;  2DJY A;  3KAB A;  3OOB A;  2ZQU A;  2F21 A;  2ZQT A;  2YSF A;  3LE4 A;  2ZR4 A;  2XP5 A;  2YSB A;  5E5W A;  2ZQV A;  4QIB A;  3FS8 A;  2DWV A;  3M7N A;  3MCB B;  5CQ2 A;  1K9Q A;  3KAF A;  3MCB A;  3KAI A;  2YSG A;  2RE3 A;  2YAJ B;  1F8A B;  1NMV A;  2M3O W;  3FSB A;  2WAD A;  1EG3 A;  4U86 A;  1K9R A;  4U84 A;  2JX8 A;  2QRV A;  1WMV A;  3KAD A;  2BA1 A;  4A0T A;  2EZ5 W;  3PQH A;  5E62 A;  1TK7 A;  3CNG A;  1TR8 A;  2XP4 A;  3FSC A;  5E64 A;  2ITK A;  3NTP A;  2DMV A;  3MQG A;  2ZQS A;  1PIN A;  2ZR6 A;  1WR7 A;  2ZAJ A;  2E45 A;  2YSH A;  3ODK A;  2XP3 A;  2XP9 A;  2M8J A;  3TDB A;  3M85 A;  2OWO A;  3WH0 A;  3L4H A;  2XPA A;  4REX A;  2XPB A;  2DK1 A;  2Q5A A;  2MDI A;  2Y8N B;  5E65 A;  2XP7 A;  4E5R A;  1FLC A;  4A0U A;  3LKX B;  3KAG A;  3LKX A;  2L4J A;  3TC5 A;  2KXQ A;  2YSI A;  4GLX A;  3TCZ A;  1YW5 A;  1EG4 A;  2XP6 A;  1I5H W;  3KAH A;  2JV4 A;  3MQH A;  2ZR5 A;  1O6W A;  5U47 A;  3KCE A;  5AHT A;  2M8I A;  2JXW A;  2LAJ A;  2JMF A;  2DK7 A;  5E66 A;  1ZCN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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