1WR7A

Solution structure of the third ww domain of nedd4-2
Total Genus 4
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
41
structure length
41
Chain Sequence
GSPGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (1-4)EMPTYTIV1 (7-10)TI5 (37-40)S1 (13-18)TI2 (10-13)TIV2 (27-30)TI3 (18-21)S2 (22-27)TI4 (28-31)S3 (32-34)Updating...
connected with : NaN
publication title Solution structures of the WW domains of Nedd4-2
rcsb
molecule keywords Nedd4-2
molecule tags Ligase
source organism Mus musculus
total genus 4
structure length 41
sequence length 41
ec nomenclature ec 2.3.2.26: HECT-type E3 ubiquitin transferase.
pdb deposition date 2004-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 1wr7A01
2XP4A 1EG4A 1NMVA 3KAFA 2YSHA 2XP8A 3KABA 1I5HW 1K9QA 2DMVA 5AHTA 2YSGA 3TC5A 3TDBA 2M8JA 3KAIA 1ZCNA 3CNGA 1F8AB 3NTPA 2ZQVA 1EG3A 2EZ5W 2DK1A 2M3OW 4U84A 2F21A 2L4JA 2LAJA 4U86A 2JV4A 2DWVA 3OOBA 2ITKA 2JX8A 2ZR5A 2KXQA 2XPAA 2DJYA 1O6WA 3M85A 3M7NA 2XP7A 2DK7A 1TK7A 2ZR6A 4REXA 2ZQTA 1PINA 2XP6A 4QIBA 3KAGA 2BA1A 3ODKA 1YW5A 2XP5A 2MDIA 1K9RA 2ZAJA 1JMQA 2JMFA 3KADA 4E5RA 3LE4A 2XP9A 3WH0A 4U85A 2RE3A 1WMVA 2XPBA 2ZR4A 3KAHA 2ZQUA 3KCEA 2YSBA 2Q5AA 2YSIA 2ZQSA 2E45A 2XP3A 3TCZA 1WR7A 2M8IA 5CQ2A 3L4HA 2YSFA 2JXWA
chains in the Genus database with same CATH superfamily
2WADA 2XP4A 1EG4A 1NMVA 3FSBA 3MCBA 3KAFA 2YSHA 2XP8A 3KABA 2Y8NB 1I5HW 2WAEA 3MQGA 4GLXA 1K9QA 2DMVA 5AHTA 5E62A 2YSGA 3TC5A 3TDBA 2M8JA 2YAJB 3KAIA 1ZCNA 3LKXB 3CNGA 1F8AB 3NTPA 2ZQVA 1EG3A 2EZ5W 2DK1A 2M3OW 4U84A 2F21A 2L4JA 2LAJA 3FS8A 4U86A 2JV4A 5U47A 2DWVA 3OOBA 2ITKA 4A0UA 4A0TA 2JX8A 2ZR5A 2KXQA 2XPAA 2DJYA 1O6WA 3M85A 3M7NA 2XP7A 2DK7A 5E66A 1TK7A 3LKXA 2ZR6A 4REXA 2ZQTA 1PINA 2XP6A 4QIBA 1FLCA 3KAGA 2BA1A 3ODKA 1YW5A 2XP5A 2MDIA 1K9RA 2QRVA 2ZAJA 1JMQA 3FSCA 2JMFA 3KADA 4E5RA 3LE4A 2XP9A 3WH0A 3MQHA 4U85A 2RE3A 1WMVA 2XPBA 2ZR4A 3MCBB 3KAHA 2ZQUA 3KCEA 3PQHA 2YSBA 5E5WA 5E64A 2Q5AA 2OWOA 2YSIA 2ZQSA 2E45A 2XP3A 1RP5A 3TCZA 1WR7A 2M8IA 1TR8A 5CQ2A 3L4HA 5E65A 2YSFA 2JXWA
chains in the Genus database with same CATH topology
2WADA 2XP4A 1EG4A 1NMVA 3FSBA 3MCBA 3KAFA 2YSHA 2XP8A 3KABA 2Y8NB 1I5HW 2WAEA 3MQGA 4GLXA 1K9QA 2DMVA 5AHTA 5E62A 2YSGA 3TC5A 3TDBA 2M8JA 2YAJB 3KAIA 1ZCNA 3LKXB 3CNGA 1F8AB 3NTPA 2ZQVA 1EG3A 2EZ5W 2DK1A 2M3OW 4U84A 2F21A 2L4JA 2LAJA 3FS8A 4U86A 2JV4A 5U47A 2DWVA 3OOBA 2ITKA 4A0UA 4A0TA 2JX8A 2ZR5A 2KXQA 2XPAA 2DJYA 1O6WA 3M85A 3M7NA 2XP7A 2DK7A 5E66A 1TK7A 3LKXA 2ZR6A 4REXA 2ZQTA 1PINA 2XP6A 4QIBA 1FLCA 3KAGA 2BA1A 3ODKA 1YW5A 2XP5A 2MDIA 1K9RA 2QRVA 2ZAJA 1JMQA 3FSCA 2JMFA 3KADA 4E5RA 3LE4A 2XP9A 3WH0A 3MQHA 4U85A 2RE3A 1WMVA 2XPBA 2ZR4A 3MCBB 3KAHA 2ZQUA 3KCEA 3PQHA 2YSBA 5E5WA 5E64A 2Q5AA 2OWOA 2YSIA 2ZQSA 2E45A 2XP3A 1RP5A 3TCZA 1WR7A 2M8IA 1TR8A 5CQ2A 3L4HA 5E65A 2YSFA 2JXWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XP4 A;  1EG4 A;  1NMV A;  3KAF A;  2YSH A;  2XP8 A;  3KAB A;  1I5H W;  1K9Q A;  2DMV A;  5AHT A;  2YSG A;  3TC5 A;  3TDB A;  2M8J A;  3KAI A;  1ZCN A;  3CNG A;  1F8A B;  3NTP A;  2ZQV A;  1EG3 A;  2EZ5 W;  2DK1 A;  2M3O W;  4U84 A;  2F21 A;  2L4J A;  2LAJ A;  4U86 A;  2JV4 A;  2DWV A;  3OOB A;  2ITK A;  2JX8 A;  2ZR5 A;  2KXQ A;  2XPA A;  2DJY A;  1O6W A;  3M85 A;  3M7N A;  2XP7 A;  2DK7 A;  1TK7 A;  2ZR6 A;  4REX A;  2ZQT A;  1PIN A;  2XP6 A;  4QIB A;  3KAG A;  2BA1 A;  3ODK A;  1YW5 A;  2XP5 A;  2MDI A;  1K9R A;  2ZAJ A;  1JMQ A;  2JMF A;  3KAD A;  4E5R A;  3LE4 A;  2XP9 A;  3WH0 A;  4U85 A;  2RE3 A;  1WMV A;  2XPB A;  2ZR4 A;  3KAH A;  2ZQU A;  3KCE A;  2YSB A;  2Q5A A;  2YSI A;  2ZQS A;  2E45 A;  2XP3 A;  3TCZ A;  1WR7 A;  2M8I A;  5CQ2 A;  3L4H A;  2YSF A;  2JXW A; 
#chains in the Genus database with same CATH topology
 2WAD A;  2XP4 A;  1EG4 A;  1NMV A;  3FSB A;  3MCB A;  3KAF A;  2YSH A;  2XP8 A;  3KAB A;  2Y8N B;  1I5H W;  2WAE A;  3MQG A;  4GLX A;  1K9Q A;  2DMV A;  5AHT A;  5E62 A;  2YSG A;  3TC5 A;  3TDB A;  2M8J A;  2YAJ B;  3KAI A;  1ZCN A;  3LKX B;  3CNG A;  1F8A B;  3NTP A;  2ZQV A;  1EG3 A;  2EZ5 W;  2DK1 A;  2M3O W;  4U84 A;  2F21 A;  2L4J A;  2LAJ A;  3FS8 A;  4U86 A;  2JV4 A;  5U47 A;  2DWV A;  3OOB A;  2ITK A;  4A0U A;  4A0T A;  2JX8 A;  2ZR5 A;  2KXQ A;  2XPA A;  2DJY A;  1O6W A;  3M85 A;  3M7N A;  2XP7 A;  2DK7 A;  5E66 A;  1TK7 A;  3LKX A;  2ZR6 A;  4REX A;  2ZQT A;  1PIN A;  2XP6 A;  4QIB A;  1FLC A;  3KAG A;  2BA1 A;  3ODK A;  1YW5 A;  2XP5 A;  2MDI A;  1K9R A;  2QRV A;  2ZAJ A;  1JMQ A;  3FSC A;  2JMF A;  3KAD A;  4E5R A;  3LE4 A;  2XP9 A;  3WH0 A;  3MQH A;  4U85 A;  2RE3 A;  1WMV A;  2XPB A;  2ZR4 A;  3MCB B;  3KAH A;  2ZQU A;  3KCE A;  3PQH A;  2YSB A;  5E5W A;  5E64 A;  2Q5A A;  2OWO A;  2YSI A;  2ZQS A;  2E45 A;  2XP3 A;  1RP5 A;  3TCZ A;  1WR7 A;  2M8I A;  1TR8 A;  5CQ2 A;  3L4H A;  5E65 A;  2YSF A;  2JXW A; 
#chains in the Genus database with same CATH homology
 2WAD A;  2XP4 A;  1EG4 A;  1NMV A;  3FSB A;  3MCB A;  3KAF A;  2YSH A;  2XP8 A;  3KAB A;  2Y8N B;  1I5H W;  2WAE A;  3MQG A;  4GLX A;  1K9Q A;  2DMV A;  5AHT A;  5E62 A;  2YSG A;  3TC5 A;  3TDB A;  2M8J A;  2YAJ B;  3KAI A;  1ZCN A;  3LKX B;  3CNG A;  1F8A B;  3NTP A;  2ZQV A;  1EG3 A;  2EZ5 W;  2DK1 A;  2M3O W;  4U84 A;  2F21 A;  2L4J A;  2LAJ A;  3FS8 A;  4U86 A;  2JV4 A;  5U47 A;  2DWV A;  3OOB A;  2ITK A;  4A0U A;  4A0T A;  2JX8 A;  2ZR5 A;  2KXQ A;  2XPA A;  2DJY A;  1O6W A;  3M85 A;  3M7N A;  2XP7 A;  2DK7 A;  5E66 A;  1TK7 A;  3LKX A;  2ZR6 A;  4REX A;  2ZQT A;  1PIN A;  2XP6 A;  4QIB A;  1FLC A;  3KAG A;  2BA1 A;  3ODK A;  1YW5 A;  2XP5 A;  2MDI A;  1K9R A;  2QRV A;  2ZAJ A;  1JMQ A;  3FSC A;  2JMF A;  3KAD A;  4E5R A;  3LE4 A;  2XP9 A;  3WH0 A;  3MQH A;  4U85 A;  2RE3 A;  1WMV A;  2XPB A;  2ZR4 A;  3MCB B;  3KAH A;  2ZQU A;  3KCE A;  3PQH A;  2YSB A;  5E5W A;  5E64 A;  2Q5A A;  2OWO A;  2YSI A;  2ZQS A;  2E45 A;  2XP3 A;  1RP5 A;  3TCZ A;  1WR7 A;  2M8I A;  1TR8 A;  5CQ2 A;  3L4H A;  5E65 A;  2YSF A;  2JXW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.