2DMVA

Solution structure of the second ww domain of itchy homolog e3 ubiquitin protein ligase (itch)
Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
43
structure length
43
Chain Sequence
GSSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (12-16)TII1 (9-12)TI2 (26-29)TI1 (17-20)S2 (22-26)TI3 (27-30)S3 (31-33)TIV1 (33-36)Updating...
connected with : NaN
molecule tags Ligase
source organism Homo sapiens
publication title Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch)
rcsb
molecule keywords Itchy homolog E3 ubiquitin protein ligase
total genus 3
structure length 43
sequence length 43
ec nomenclature ec 2.3.2.26: HECT-type E3 ubiquitin transferase.
pdb deposition date 2006-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2dmvA01
2XP8A 3KAGA 2F21A 2JX8A 2YSIA 2E45A 4E5RA 2DK7A 2M8JA 2EZ5W 1ZCNA 2M8IA 4REXA 4QIBA 1NMVA 2JMFA 3LE4A 2YSGA 2RE3A 2ZR6A 1TK7A 1WMVA 2ZQSA 2KXQA 2DWVA 3TDBA 3CNGA 1F8AB 2M3OW 1K9RA 1I5HW 2ZQVA 2ITKA 2L4JA 2JXWA 2LAJA 3KAFA 4U84A 2DMVA 4U86A 2XP6A 2XP4A 1K9QA 2DK1A 2XP7A 3KAHA 2ZAJA 2JV4A 3NTPA 2Q5AA 3ODKA 3KAIA 4U85A 5AHTA 3WH0A 2XP9A 2ZQUA 5CQ2A 2YSBA 3L4HA 1PINA 1EG4A 2XPAA 2ZR5A 3KCEA 3KADA 2YSFA 1YW5A 1EG3A 3M7NA 2XPBA 3KABA 2ZR4A 3TC5A 1O6WA 3TCZA 2ZQTA 2DJYA 2YSHA 2BA1A 2MDIA 2XP3A 2XP5A 1WR7A 3OOBA 3M85A 1JMQA
chains in the Genus database with same CATH superfamily
2XP8A 3KAGA 5E5WA 3MQHA 2F21A 2JX8A 2YSIA 2E45A 3FS8A 4E5RA 2DK7A 2M8JA 2EZ5W 1ZCNA 2M8IA 4REXA 2YAJB 4QIBA 1NMVA 2JMFA 3LE4A 2OWOA 2YSGA 2RE3A 2ZR6A 1FLCA 1TK7A 1WMVA 2ZQSA 3LKXA 2KXQA 2DWVA 3TDBA 3CNGA 1F8AB 5E64A 1TR8A 2M3OW 3PQHA 1K9RA 1I5HW 1RP5A 2ZQVA 2ITKA 2L4JA 2JXWA 2LAJA 4A0UA 5E65A 3KAFA 4U84A 5U47A 2DMVA 4U86A 5E62A 2Y8NB 2XP6A 2WAEA 2XP4A 3FSCA 1K9QA 2DK1A 2XP7A 3KAHA 2ZAJA 2JV4A 3NTPA 2Q5AA 3ODKA 3KAIA 4U85A 3FSBA 5AHTA 3MCBB 3WH0A 2XP9A 2ZQUA 5CQ2A 3LKXB 2QRVA 2WADA 5E66A 2YSBA 3L4HA 1PINA 1EG4A 3MQGA 2XPAA 2ZR5A 3KCEA 3KADA 2YSFA 1YW5A 4GLXA 1EG3A 3M7NA 2XPBA 3KABA 2ZR4A 3TC5A 1O6WA 4A0TA 3TCZA 2ZQTA 2DJYA 2YSHA 2BA1A 2MDIA 2XP3A 2XP5A 3MCBA 1WR7A 3OOBA 3M85A 1JMQA
chains in the Genus database with same CATH topology
2XP8A 3KAGA 5E5WA 3MQHA 2F21A 2JX8A 2YSIA 2E45A 3FS8A 4E5RA 2DK7A 2M8JA 2EZ5W 1ZCNA 2M8IA 4REXA 2YAJB 4QIBA 1NMVA 2JMFA 3LE4A 2OWOA 2YSGA 2RE3A 2ZR6A 1FLCA 1TK7A 1WMVA 2ZQSA 3LKXA 2KXQA 2DWVA 3TDBA 3CNGA 1F8AB 5E64A 1TR8A 2M3OW 3PQHA 1K9RA 1I5HW 1RP5A 2ZQVA 2ITKA 2L4JA 2JXWA 2LAJA 4A0UA 5E65A 3KAFA 4U84A 5U47A 2DMVA 4U86A 5E62A 2Y8NB 2XP6A 2WAEA 2XP4A 3FSCA 1K9QA 2DK1A 2XP7A 3KAHA 2ZAJA 2JV4A 3NTPA 2Q5AA 3ODKA 3KAIA 4U85A 3FSBA 5AHTA 3MCBB 3WH0A 2XP9A 2ZQUA 5CQ2A 3LKXB 2QRVA 2WADA 5E66A 2YSBA 3L4HA 1PINA 1EG4A 3MQGA 2XPAA 2ZR5A 3KCEA 3KADA 2YSFA 1YW5A 4GLXA 1EG3A 3M7NA 2XPBA 3KABA 2ZR4A 3TC5A 1O6WA 4A0TA 3TCZA 2ZQTA 2DJYA 2YSHA 2BA1A 2MDIA 2XP3A 2XP5A 3MCBA 1WR7A 3OOBA 3M85A 1JMQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XP8 A;  3KAG A;  2F21 A;  2JX8 A;  2YSI A;  2E45 A;  4E5R A;  2DK7 A;  2M8J A;  2EZ5 W;  1ZCN A;  2M8I A;  4REX A;  4QIB A;  1NMV A;  2JMF A;  3LE4 A;  2YSG A;  2RE3 A;  2ZR6 A;  1TK7 A;  1WMV A;  2ZQS A;  2KXQ A;  2DWV A;  3TDB A;  3CNG A;  1F8A B;  2M3O W;  1K9R A;  1I5H W;  2ZQV A;  2ITK A;  2L4J A;  2JXW A;  2LAJ A;  3KAF A;  4U84 A;  2DMV A;  4U86 A;  2XP6 A;  2XP4 A;  1K9Q A;  2DK1 A;  2XP7 A;  3KAH A;  2ZAJ A;  2JV4 A;  3NTP A;  2Q5A A;  3ODK A;  3KAI A;  4U85 A;  5AHT A;  3WH0 A;  2XP9 A;  2ZQU A;  5CQ2 A;  2YSB A;  3L4H A;  1PIN A;  1EG4 A;  2XPA A;  2ZR5 A;  3KCE A;  3KAD A;  2YSF A;  1YW5 A;  1EG3 A;  3M7N A;  2XPB A;  3KAB A;  2ZR4 A;  3TC5 A;  1O6W A;  3TCZ A;  2ZQT A;  2DJY A;  2YSH A;  2BA1 A;  2MDI A;  2XP3 A;  2XP5 A;  1WR7 A;  3OOB A;  3M85 A;  1JMQ A; 
#chains in the Genus database with same CATH topology
 2XP8 A;  3KAG A;  5E5W A;  3MQH A;  2F21 A;  2JX8 A;  2YSI A;  2E45 A;  3FS8 A;  4E5R A;  2DK7 A;  2M8J A;  2EZ5 W;  1ZCN A;  2M8I A;  4REX A;  2YAJ B;  4QIB A;  1NMV A;  2JMF A;  3LE4 A;  2OWO A;  2YSG A;  2RE3 A;  2ZR6 A;  1FLC A;  1TK7 A;  1WMV A;  2ZQS A;  3LKX A;  2KXQ A;  2DWV A;  3TDB A;  3CNG A;  1F8A B;  5E64 A;  1TR8 A;  2M3O W;  3PQH A;  1K9R A;  1I5H W;  1RP5 A;  2ZQV A;  2ITK A;  2L4J A;  2JXW A;  2LAJ A;  4A0U A;  5E65 A;  3KAF A;  4U84 A;  5U47 A;  2DMV A;  4U86 A;  5E62 A;  2Y8N B;  2XP6 A;  2WAE A;  2XP4 A;  3FSC A;  1K9Q A;  2DK1 A;  2XP7 A;  3KAH A;  2ZAJ A;  2JV4 A;  3NTP A;  2Q5A A;  3ODK A;  3KAI A;  4U85 A;  3FSB A;  5AHT A;  3MCB B;  3WH0 A;  2XP9 A;  2ZQU A;  5CQ2 A;  3LKX B;  2QRV A;  2WAD A;  5E66 A;  2YSB A;  3L4H A;  1PIN A;  1EG4 A;  3MQG A;  2XPA A;  2ZR5 A;  3KCE A;  3KAD A;  2YSF A;  1YW5 A;  4GLX A;  1EG3 A;  3M7N A;  2XPB A;  3KAB A;  2ZR4 A;  3TC5 A;  1O6W A;  4A0T A;  3TCZ A;  2ZQT A;  2DJY A;  2YSH A;  2BA1 A;  2MDI A;  2XP3 A;  2XP5 A;  3MCB A;  1WR7 A;  3OOB A;  3M85 A;  1JMQ A; 
#chains in the Genus database with same CATH homology
 2XP8 A;  3KAG A;  5E5W A;  3MQH A;  2F21 A;  2JX8 A;  2YSI A;  2E45 A;  3FS8 A;  4E5R A;  2DK7 A;  2M8J A;  2EZ5 W;  1ZCN A;  2M8I A;  4REX A;  2YAJ B;  4QIB A;  1NMV A;  2JMF A;  3LE4 A;  2OWO A;  2YSG A;  2RE3 A;  2ZR6 A;  1FLC A;  1TK7 A;  1WMV A;  2ZQS A;  3LKX A;  2KXQ A;  2DWV A;  3TDB A;  3CNG A;  1F8A B;  5E64 A;  1TR8 A;  2M3O W;  3PQH A;  1K9R A;  1I5H W;  1RP5 A;  2ZQV A;  2ITK A;  2L4J A;  2JXW A;  2LAJ A;  4A0U A;  5E65 A;  3KAF A;  4U84 A;  5U47 A;  2DMV A;  4U86 A;  5E62 A;  2Y8N B;  2XP6 A;  2WAE A;  2XP4 A;  3FSC A;  1K9Q A;  2DK1 A;  2XP7 A;  3KAH A;  2ZAJ A;  2JV4 A;  3NTP A;  2Q5A A;  3ODK A;  3KAI A;  4U85 A;  3FSB A;  5AHT A;  3MCB B;  3WH0 A;  2XP9 A;  2ZQU A;  5CQ2 A;  3LKX B;  2QRV A;  2WAD A;  5E66 A;  2YSB A;  3L4H A;  1PIN A;  1EG4 A;  3MQG A;  2XPA A;  2ZR5 A;  3KCE A;  3KAD A;  2YSF A;  1YW5 A;  4GLX A;  1EG3 A;  3M7N A;  2XPB A;  3KAB A;  2ZR4 A;  3TC5 A;  1O6W A;  4A0T A;  3TCZ A;  2ZQT A;  2DJY A;  2YSH A;  2BA1 A;  2MDI A;  2XP3 A;  2XP5 A;  3MCB A;  1WR7 A;  3OOB A;  3M85 A;  1JMQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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