2JMFA

Solution structure of the su(dx) ww4- notch py peptide complex
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
43
structure length
43
Chain Sequence
VSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase/signaling protein
source organism Drosophila melanogaster
publication title Specificity and Autoregulation of Notch Binding by Tandem WW Domains in Suppressor of Deltex
pubmed doi rcsb
molecule keywords E3 ubiquitin-protein ligase suppressor of deltex
total genus 2
structure length 43
sequence length 43
ec nomenclature ec 2.3.2.26: HECT-type E3 ubiquitin transferase.
pdb deposition date 2006-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2jmfA01
2JX8A 2BA1A 3KADA 1NMVA 3KCEA 1WR7A 5CQ2A 2YSIA 1PINA 2EZ5W 4REXA 2DMVA 1TK7A 2XP8A 2JXWA 2XP9A 2MDIA 4QIBA 4U86A 2RE3A 3ODKA 2M3OW 3WH0A 3M85A 2DJYA 3CNGA 3L4HA 3KAFA 2JV4A 2L4JA 2YSBA 2DK1A 2LAJA 2YSHA 2ZR5A 3NTPA 2JMFA 3KAGA 1YW5A 2YSFA 2XPBA 1JMQA 2M8IA 4E5RA 1I5HW 3LE4A 1K9QA 1F8AB 3TCZA 1K9RA 2DWVA 3M7NA 2XP6A 2XP5A 2ZAJA 3TDBA 2M8JA 4U84A 2Q5AA 2KXQA 2XPAA 2ITKA 2YSGA 2XP3A 3KAHA 2DK7A 1O6WA 1ZCNA 2ZQUA 1EG4A 2XP7A 5AHTA 1EG3A 2ZQTA 2E45A 3TC5A 2ZR6A 2ZR4A 3KAIA 1WMVA 2XP4A 2F21A 4U85A 3OOBA 2ZQSA 3KABA 2ZQVA
chains in the Genus database with same CATH superfamily
2JX8A 2BA1A 3KADA 2Y8NB 1NMVA 3KCEA 1WR7A 5CQ2A 2YSIA 1PINA 2EZ5W 3FSCA 4REXA 2DMVA 1TK7A 5E62A 3MCBA 3MQGA 2XP8A 2JXWA 2XP9A 2MDIA 5E64A 4QIBA 4U86A 2RE3A 2YAJB 3ODKA 2M3OW 3WH0A 3M85A 2DJYA 4A0TA 3CNGA 3L4HA 3KAFA 2JV4A 2L4JA 4A0UA 2YSBA 2DK1A 2LAJA 1FLCA 2YSHA 2ZR5A 3NTPA 2JMFA 3KAGA 1YW5A 2WADA 2YSFA 5U47A 2XPBA 1JMQA 2M8IA 4E5RA 1I5HW 3LE4A 1K9QA 1F8AB 3TCZA 1K9RA 2DWVA 3M7NA 2XP6A 3LKXB 2XP5A 2ZAJA 5E5WA 3TDBA 2M8JA 4U84A 2WAEA 2Q5AA 2KXQA 2XPAA 3FSBA 2OWOA 2ITKA 2YSGA 2QRVA 2XP3A 5E66A 3KAHA 3FS8A 2DK7A 1O6WA 1ZCNA 2ZQUA 1EG4A 2XP7A 3PQHA 5AHTA 1EG3A 2ZQTA 2E45A 3LKXA 3TC5A 2ZR6A 2ZR4A 3KAIA 1WMVA 2XP4A 2F21A 4U85A 5E65A 3OOBA 4GLXA 1TR8A 3MCBB 3MQHA 2ZQSA 3KABA 1RP5A 2ZQVA
chains in the Genus database with same CATH topology
2JX8A 2BA1A 3KADA 2Y8NB 1NMVA 3KCEA 1WR7A 5CQ2A 2YSIA 1PINA 2EZ5W 3FSCA 4REXA 2DMVA 1TK7A 5E62A 3MCBA 3MQGA 2XP8A 2JXWA 2XP9A 2MDIA 5E64A 4QIBA 4U86A 2RE3A 2YAJB 3ODKA 2M3OW 3WH0A 3M85A 2DJYA 4A0TA 3CNGA 3L4HA 3KAFA 2JV4A 2L4JA 4A0UA 2YSBA 2DK1A 2LAJA 1FLCA 2YSHA 2ZR5A 3NTPA 2JMFA 3KAGA 1YW5A 2WADA 2YSFA 5U47A 2XPBA 1JMQA 2M8IA 4E5RA 1I5HW 3LE4A 1K9QA 1F8AB 3TCZA 1K9RA 2DWVA 3M7NA 2XP6A 3LKXB 2XP5A 2ZAJA 5E5WA 3TDBA 2M8JA 4U84A 2WAEA 2Q5AA 2KXQA 2XPAA 3FSBA 2OWOA 2ITKA 2YSGA 2QRVA 2XP3A 5E66A 3KAHA 3FS8A 2DK7A 1O6WA 1ZCNA 2ZQUA 1EG4A 2XP7A 3PQHA 5AHTA 1EG3A 2ZQTA 2E45A 3LKXA 3TC5A 2ZR6A 2ZR4A 3KAIA 1WMVA 2XP4A 2F21A 4U85A 5E65A 3OOBA 4GLXA 1TR8A 3MCBB 3MQHA 2ZQSA 3KABA 1RP5A 2ZQVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JX8 A;  2BA1 A;  3KAD A;  1NMV A;  3KCE A;  1WR7 A;  5CQ2 A;  2YSI A;  1PIN A;  2EZ5 W;  4REX A;  2DMV A;  1TK7 A;  2XP8 A;  2JXW A;  2XP9 A;  2MDI A;  4QIB A;  4U86 A;  2RE3 A;  3ODK A;  2M3O W;  3WH0 A;  3M85 A;  2DJY A;  3CNG A;  3L4H A;  3KAF A;  2JV4 A;  2L4J A;  2YSB A;  2DK1 A;  2LAJ A;  2YSH A;  2ZR5 A;  3NTP A;  2JMF A;  3KAG A;  1YW5 A;  2YSF A;  2XPB A;  1JMQ A;  2M8I A;  4E5R A;  1I5H W;  3LE4 A;  1K9Q A;  1F8A B;  3TCZ A;  1K9R A;  2DWV A;  3M7N A;  2XP6 A;  2XP5 A;  2ZAJ A;  3TDB A;  2M8J A;  4U84 A;  2Q5A A;  2KXQ A;  2XPA A;  2ITK A;  2YSG A;  2XP3 A;  3KAH A;  2DK7 A;  1O6W A;  1ZCN A;  2ZQU A;  1EG4 A;  2XP7 A;  5AHT A;  1EG3 A;  2ZQT A;  2E45 A;  3TC5 A;  2ZR6 A;  2ZR4 A;  3KAI A;  1WMV A;  2XP4 A;  2F21 A;  4U85 A;  3OOB A;  2ZQS A;  3KAB A;  2ZQV A; 
#chains in the Genus database with same CATH topology
 2JX8 A;  2BA1 A;  3KAD A;  2Y8N B;  1NMV A;  3KCE A;  1WR7 A;  5CQ2 A;  2YSI A;  1PIN A;  2EZ5 W;  3FSC A;  4REX A;  2DMV A;  1TK7 A;  5E62 A;  3MCB A;  3MQG A;  2XP8 A;  2JXW A;  2XP9 A;  2MDI A;  5E64 A;  4QIB A;  4U86 A;  2RE3 A;  2YAJ B;  3ODK A;  2M3O W;  3WH0 A;  3M85 A;  2DJY A;  4A0T A;  3CNG A;  3L4H A;  3KAF A;  2JV4 A;  2L4J A;  4A0U A;  2YSB A;  2DK1 A;  2LAJ A;  1FLC A;  2YSH A;  2ZR5 A;  3NTP A;  2JMF A;  3KAG A;  1YW5 A;  2WAD A;  2YSF A;  5U47 A;  2XPB A;  1JMQ A;  2M8I A;  4E5R A;  1I5H W;  3LE4 A;  1K9Q A;  1F8A B;  3TCZ A;  1K9R A;  2DWV A;  3M7N A;  2XP6 A;  3LKX B;  2XP5 A;  2ZAJ A;  5E5W A;  3TDB A;  2M8J A;  4U84 A;  2WAE A;  2Q5A A;  2KXQ A;  2XPA A;  3FSB A;  2OWO A;  2ITK A;  2YSG A;  2QRV A;  2XP3 A;  5E66 A;  3KAH A;  3FS8 A;  2DK7 A;  1O6W A;  1ZCN A;  2ZQU A;  1EG4 A;  2XP7 A;  3PQH A;  5AHT A;  1EG3 A;  2ZQT A;  2E45 A;  3LKX A;  3TC5 A;  2ZR6 A;  2ZR4 A;  3KAI A;  1WMV A;  2XP4 A;  2F21 A;  4U85 A;  5E65 A;  3OOB A;  4GLX A;  1TR8 A;  3MCB B;  3MQH A;  2ZQS A;  3KAB A;  1RP5 A;  2ZQV A; 
#chains in the Genus database with same CATH homology
 2JX8 A;  2BA1 A;  3KAD A;  2Y8N B;  1NMV A;  3KCE A;  1WR7 A;  5CQ2 A;  2YSI A;  1PIN A;  2EZ5 W;  3FSC A;  4REX A;  2DMV A;  1TK7 A;  5E62 A;  3MCB A;  3MQG A;  2XP8 A;  2JXW A;  2XP9 A;  2MDI A;  5E64 A;  4QIB A;  4U86 A;  2RE3 A;  2YAJ B;  3ODK A;  2M3O W;  3WH0 A;  3M85 A;  2DJY A;  4A0T A;  3CNG A;  3L4H A;  3KAF A;  2JV4 A;  2L4J A;  4A0U A;  2YSB A;  2DK1 A;  2LAJ A;  1FLC A;  2YSH A;  2ZR5 A;  3NTP A;  2JMF A;  3KAG A;  1YW5 A;  2WAD A;  2YSF A;  5U47 A;  2XPB A;  1JMQ A;  2M8I A;  4E5R A;  1I5H W;  3LE4 A;  1K9Q A;  1F8A B;  3TCZ A;  1K9R A;  2DWV A;  3M7N A;  2XP6 A;  3LKX B;  2XP5 A;  2ZAJ A;  5E5W A;  3TDB A;  2M8J A;  4U84 A;  2WAE A;  2Q5A A;  2KXQ A;  2XPA A;  3FSB A;  2OWO A;  2ITK A;  2YSG A;  2QRV A;  2XP3 A;  5E66 A;  3KAH A;  3FS8 A;  2DK7 A;  1O6W A;  1ZCN A;  2ZQU A;  1EG4 A;  2XP7 A;  3PQH A;  5AHT A;  1EG3 A;  2ZQT A;  2E45 A;  3LKX A;  3TC5 A;  2ZR6 A;  2ZR4 A;  3KAI A;  1WMV A;  2XP4 A;  2F21 A;  4U85 A;  5E65 A;  3OOB A;  4GLX A;  1TR8 A;  3MCB B;  3MQH A;  2ZQS A;  3KAB A;  1RP5 A;  2ZQV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.