2L4JA

Yap ww2
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
GSPNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLETR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
source organism Oryzias latipes
publication title Structural Features and Ligand Binding Properties of Tandem WW Domains from YAP and TAZ, Nuclear Effectors of the Hippo Pathway.
pubmed doi rcsb
molecule keywords Yes-associated protein 2 (YAP2)
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2010-10-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2l4jA00
2YSHA 4U86A 1WMVA 1ZCNA 1TK7A 3KCEA 2MDIA 3KAIA 5CQ2A 1K9RA 3WH0A 3KAFA 2E45A 3M85A 3KAHA 2ZQUA 1YW5A 2RE3A 2F21A 3NTPA 2Q5AA 1PINA 2YSGA 2L4JA 1NMVA 2YSBA 2YSIA 2XP3A 3OOBA 2ZR6A 5AHTA 2JV4A 2ITKA 2JX8A 4E5RA 2XPAA 3TC5A 3KADA 2XP4A 3L4HA 1JMQA 2LAJA 2XP7A 2EZ5W 2XP5A 2XPBA 1O6WA 2ZQVA 1WR7A 2YSFA 2DK1A 3KAGA 2DJYA 4U85A 2XP9A 4REXA 2ZR5A 2XP8A 2M8IA 1I5HW 2ZAJA 2DMVA 2ZQSA 1EG4A 1EG3A 4QIBA 2DK7A 2DWVA 2BA1A 3M7NA 4U84A 1F8AB 3ODKA 2JXWA 2M3OW 2ZQTA 2M8JA 2KXQA 3TDBA 2JMFA 1K9QA 3CNGA 3KABA 2ZR4A 3TCZA 2XP6A 3LE4A
chains in the Genus database with same CATH superfamily
2YSHA 4U86A 1WMVA 1ZCNA 1TK7A 3KCEA 2MDIA 3KAIA 5CQ2A 1K9RA 2WAEA 3WH0A 3KAFA 4GLXA 2E45A 3M85A 3KAHA 2ZQUA 1YW5A 2RE3A 2F21A 3NTPA 3LKXB 2Q5AA 1PINA 2YSGA 2L4JA 1NMVA 2YSBA 2YSIA 2XP3A 3OOBA 2ZR6A 5AHTA 2JV4A 1FLCA 3FS8A 1RP5A 5E65A 2ITKA 2JX8A 4E5RA 3FSBA 3MCBA 2XPAA 3TC5A 3KADA 2XP4A 2Y8NB 3L4HA 1JMQA 2LAJA 2XP7A 5E64A 2EZ5W 2XP5A 4A0UA 2OWOA 2XPBA 1O6WA 2ZQVA 1WR7A 2YSFA 2DK1A 3KAGA 2DJYA 3LKXA 4U85A 3PQHA 2XP9A 4REXA 3MCBB 5E62A 2ZR5A 2XP8A 1TR8A 2M8IA 1I5HW 2ZAJA 2DMVA 2ZQSA 2WADA 1EG4A 1EG3A 4QIBA 2DWVA 2DK7A 2BA1A 3FSCA 4U84A 3M7NA 3MQGA 1F8AB 4A0TA 3ODKA 3MQHA 2JXWA 2M3OW 2ZQTA 2M8JA 5U47A 2KXQA 3TDBA 2JMFA 1K9QA 3CNGA 5E66A 3KABA 2YAJB 2ZR4A 3TCZA 5E5WA 2QRVA 2XP6A 3LE4A
chains in the Genus database with same CATH topology
2YSHA 4U86A 1WMVA 1ZCNA 1TK7A 3KCEA 2MDIA 3KAIA 5CQ2A 1K9RA 2WAEA 3WH0A 3KAFA 4GLXA 2E45A 3M85A 3KAHA 2ZQUA 1YW5A 2RE3A 2F21A 3NTPA 3LKXB 2Q5AA 1PINA 2YSGA 2L4JA 1NMVA 2YSBA 2YSIA 2XP3A 3OOBA 2ZR6A 5AHTA 2JV4A 1FLCA 3FS8A 1RP5A 5E65A 2ITKA 2JX8A 4E5RA 3FSBA 3MCBA 2XPAA 3TC5A 3KADA 2XP4A 2Y8NB 3L4HA 1JMQA 2LAJA 2XP7A 5E64A 2EZ5W 2XP5A 4A0UA 2OWOA 2XPBA 1O6WA 2ZQVA 1WR7A 2YSFA 2DK1A 3KAGA 2DJYA 3LKXA 4U85A 3PQHA 2XP9A 4REXA 3MCBB 5E62A 2ZR5A 2XP8A 1TR8A 2M8IA 1I5HW 2ZAJA 2DMVA 2ZQSA 2WADA 1EG4A 1EG3A 4QIBA 2DWVA 2DK7A 2BA1A 3FSCA 4U84A 3M7NA 3MQGA 1F8AB 4A0TA 3ODKA 3MQHA 2JXWA 2M3OW 2ZQTA 2M8JA 5U47A 2KXQA 3TDBA 2JMFA 1K9QA 3CNGA 5E66A 3KABA 2YAJB 2ZR4A 3TCZA 5E5WA 2QRVA 2XP6A 3LE4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YSH A;  4U86 A;  1WMV A;  1ZCN A;  1TK7 A;  3KCE A;  2MDI A;  3KAI A;  5CQ2 A;  1K9R A;  3WH0 A;  3KAF A;  2E45 A;  3M85 A;  3KAH A;  2ZQU A;  1YW5 A;  2RE3 A;  2F21 A;  3NTP A;  2Q5A A;  1PIN A;  2YSG A;  2L4J A;  1NMV A;  2YSB A;  2YSI A;  2XP3 A;  3OOB A;  2ZR6 A;  5AHT A;  2JV4 A;  2ITK A;  2JX8 A;  4E5R A;  2XPA A;  3TC5 A;  3KAD A;  2XP4 A;  3L4H A;  1JMQ A;  2LAJ A;  2XP7 A;  2EZ5 W;  2XP5 A;  2XPB A;  1O6W A;  2ZQV A;  1WR7 A;  2YSF A;  2DK1 A;  3KAG A;  2DJY A;  4U85 A;  2XP9 A;  4REX A;  2ZR5 A;  2XP8 A;  2M8I A;  1I5H W;  2ZAJ A;  2DMV A;  2ZQS A;  1EG4 A;  1EG3 A;  4QIB A;  2DK7 A;  2DWV A;  2BA1 A;  3M7N A;  4U84 A;  1F8A B;  3ODK A;  2JXW A;  2M3O W;  2ZQT A;  2M8J A;  2KXQ A;  3TDB A;  2JMF A;  1K9Q A;  3CNG A;  3KAB A;  2ZR4 A;  3TCZ A;  2XP6 A;  3LE4 A; 
#chains in the Genus database with same CATH topology
 2YSH A;  4U86 A;  1WMV A;  1ZCN A;  1TK7 A;  3KCE A;  2MDI A;  3KAI A;  5CQ2 A;  1K9R A;  2WAE A;  3WH0 A;  3KAF A;  4GLX A;  2E45 A;  3M85 A;  3KAH A;  2ZQU A;  1YW5 A;  2RE3 A;  2F21 A;  3NTP A;  3LKX B;  2Q5A A;  1PIN A;  2YSG A;  2L4J A;  1NMV A;  2YSB A;  2YSI A;  2XP3 A;  3OOB A;  2ZR6 A;  5AHT A;  2JV4 A;  1FLC A;  3FS8 A;  1RP5 A;  5E65 A;  2ITK A;  2JX8 A;  4E5R A;  3FSB A;  3MCB A;  2XPA A;  3TC5 A;  3KAD A;  2XP4 A;  2Y8N B;  3L4H A;  1JMQ A;  2LAJ A;  2XP7 A;  5E64 A;  2EZ5 W;  2XP5 A;  4A0U A;  2OWO A;  2XPB A;  1O6W A;  2ZQV A;  1WR7 A;  2YSF A;  2DK1 A;  3KAG A;  2DJY A;  3LKX A;  4U85 A;  3PQH A;  2XP9 A;  4REX A;  3MCB B;  5E62 A;  2ZR5 A;  2XP8 A;  1TR8 A;  2M8I A;  1I5H W;  2ZAJ A;  2DMV A;  2ZQS A;  2WAD A;  1EG4 A;  1EG3 A;  4QIB A;  2DWV A;  2DK7 A;  2BA1 A;  3FSC A;  4U84 A;  3M7N A;  3MQG A;  1F8A B;  4A0T A;  3ODK A;  3MQH A;  2JXW A;  2M3O W;  2ZQT A;  2M8J A;  5U47 A;  2KXQ A;  3TDB A;  2JMF A;  1K9Q A;  3CNG A;  5E66 A;  3KAB A;  2YAJ B;  2ZR4 A;  3TCZ A;  5E5W A;  2QRV A;  2XP6 A;  3LE4 A; 
#chains in the Genus database with same CATH homology
 2YSH A;  4U86 A;  1WMV A;  1ZCN A;  1TK7 A;  3KCE A;  2MDI A;  3KAI A;  5CQ2 A;  1K9R A;  2WAE A;  3WH0 A;  3KAF A;  4GLX A;  2E45 A;  3M85 A;  3KAH A;  2ZQU A;  1YW5 A;  2RE3 A;  2F21 A;  3NTP A;  3LKX B;  2Q5A A;  1PIN A;  2YSG A;  2L4J A;  1NMV A;  2YSB A;  2YSI A;  2XP3 A;  3OOB A;  2ZR6 A;  5AHT A;  2JV4 A;  1FLC A;  3FS8 A;  1RP5 A;  5E65 A;  2ITK A;  2JX8 A;  4E5R A;  3FSB A;  3MCB A;  2XPA A;  3TC5 A;  3KAD A;  2XP4 A;  2Y8N B;  3L4H A;  1JMQ A;  2LAJ A;  2XP7 A;  5E64 A;  2EZ5 W;  2XP5 A;  4A0U A;  2OWO A;  2XPB A;  1O6W A;  2ZQV A;  1WR7 A;  2YSF A;  2DK1 A;  3KAG A;  2DJY A;  3LKX A;  4U85 A;  3PQH A;  2XP9 A;  4REX A;  3MCB B;  5E62 A;  2ZR5 A;  2XP8 A;  1TR8 A;  2M8I A;  1I5H W;  2ZAJ A;  2DMV A;  2ZQS A;  2WAD A;  1EG4 A;  1EG3 A;  4QIB A;  2DWV A;  2DK7 A;  2BA1 A;  3FSC A;  4U84 A;  3M7N A;  3MQG A;  1F8A B;  4A0T A;  3ODK A;  3MQH A;  2JXW A;  2M3O W;  2ZQT A;  2M8J A;  5U47 A;  2KXQ A;  3TDB A;  2JMF A;  1K9Q A;  3CNG A;  5E66 A;  3KAB A;  2YAJ B;  2ZR4 A;  3TCZ A;  5E5W A;  2QRV A;  2XP6 A;  3LE4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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