2M3OW

Structure and dynamics of a human nedd4 ww domain-enac complex
Total Genus 4

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
43
structure length
43
Chain Sequence
GSMEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Peptide binding protein/protein binding
source organism Homo sapiens
publication title Structure and dynamics of human Nedd4-1 WW3 in complex with the alpha ENaC PY motif.
pubmed doi rcsb
molecule keywords E3 ubiquitin-protein ligase NEDD4
total genus 4
structure length 43
sequence length 43
ec nomenclature ec 2.3.2.26: HECT-type E3 ubiquitin transferase.
pdb deposition date 2013-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2m3oW01
2XP6A 2ZQUA 2XP8A 2YSFA 2YSBA 2YSHA 4U86A 2MDIA 2ZQSA 1YW5A 3M85A 1O6WA 2JX8A 1TK7A 4E5RA 2JXWA 1WR7A 3M7NA 2DMVA 2ITKA 5AHTA 2ZQTA 1K9RA 2L4JA 3KADA 4QIBA 2KXQA 3ODKA 3KAFA 2JMFA 3TDBA 1WMVA 3TCZA 3L4HA 1ZCNA 3CNGA 2DK7A 2M8JA 2F21A 2M3OW 5CQ2A 1K9QA 4REXA 3LE4A 4U85A 2ZQVA 1NMVA 2DK1A 3KABA 2ZR5A 2ZR4A 3KAGA 2EZ5W 2XP7A 3KAHA 2XP3A 1PINA 3WH0A 1JMQA 2YSIA 2E45A 2XPBA 3OOBA 3TC5A 2DWVA 2Q5AA 2DJYA 2JV4A 3KCEA 2YSGA 1EG3A 2M8IA 2BA1A 2XP9A 2XP4A 2XP5A 3NTPA 4U84A 1EG4A 2XPAA 3KAIA 1F8AB 2ZR6A 2LAJA 2RE3A 2ZAJA 1I5HW
chains in the Genus database with same CATH superfamily
2XP6A 2ZQUA 2XP8A 4A0TA 2YAJB 2YSFA 2YSBA 3MQGA 5E65A 2YSHA 4U86A 4A0UA 2MDIA 2ZQSA 1YW5A 3M85A 1RP5A 1O6WA 2JX8A 3FSBA 1TK7A 4E5RA 2JXWA 5E64A 1WR7A 3M7NA 2DMVA 3PQHA 5U47A 2ITKA 5AHTA 2ZQTA 3FSCA 1K9RA 2L4JA 3KADA 4QIBA 2KXQA 3ODKA 3KAFA 2JMFA 3TDBA 1WMVA 3TCZA 3L4HA 2WADA 1ZCNA 2WAEA 5E5WA 3CNGA 3LKXB 1TR8A 3FS8A 3MCBA 2DK7A 2M8JA 2F21A 2M3OW 5CQ2A 5E66A 1K9QA 4REXA 4GLXA 3LE4A 4U85A 2ZQVA 1NMVA 2DK1A 1FLCA 3KABA 2ZR5A 2ZR4A 3KAGA 2EZ5W 2OWOA 2XP7A 3KAHA 2XP3A 1PINA 3WH0A 1JMQA 2YSIA 2E45A 2XPBA 3OOBA 3TC5A 2DWVA 2Q5AA 2DJYA 2JV4A 3KCEA 2YSGA 1EG3A 2M8IA 2BA1A 2XP9A 2Y8NB 3MQHA 2XP4A 2XP5A 3NTPA 4U84A 1EG4A 2XPAA 2QRVA 3KAIA 1F8AB 3LKXA 2ZR6A 2LAJA 3MCBB 2RE3A 2ZAJA 1I5HW 5E62A
chains in the Genus database with same CATH topology
2XP6A 2ZQUA 2XP8A 4A0TA 2YAJB 2YSFA 2YSBA 3MQGA 5E65A 2YSHA 4U86A 4A0UA 2MDIA 2ZQSA 1YW5A 3M85A 1RP5A 1O6WA 2JX8A 3FSBA 1TK7A 4E5RA 2JXWA 5E64A 1WR7A 3M7NA 2DMVA 3PQHA 5U47A 2ITKA 5AHTA 2ZQTA 3FSCA 1K9RA 2L4JA 3KADA 4QIBA 2KXQA 3ODKA 3KAFA 2JMFA 3TDBA 1WMVA 3TCZA 3L4HA 2WADA 1ZCNA 2WAEA 5E5WA 3CNGA 3LKXB 1TR8A 3FS8A 3MCBA 2DK7A 2M8JA 2F21A 2M3OW 5CQ2A 5E66A 1K9QA 4REXA 4GLXA 3LE4A 4U85A 2ZQVA 1NMVA 2DK1A 1FLCA 3KABA 2ZR5A 2ZR4A 3KAGA 2EZ5W 2OWOA 2XP7A 3KAHA 2XP3A 1PINA 3WH0A 1JMQA 2YSIA 2E45A 2XPBA 3OOBA 3TC5A 2DWVA 2Q5AA 2DJYA 2JV4A 3KCEA 2YSGA 1EG3A 2M8IA 2BA1A 2XP9A 2Y8NB 3MQHA 2XP4A 2XP5A 3NTPA 4U84A 1EG4A 2XPAA 2QRVA 3KAIA 1F8AB 3LKXA 2ZR6A 2LAJA 3MCBB 2RE3A 2ZAJA 1I5HW 5E62A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XP6 A;  2ZQU A;  2XP8 A;  2YSF A;  2YSB A;  2YSH A;  4U86 A;  2MDI A;  2ZQS A;  1YW5 A;  3M85 A;  1O6W A;  2JX8 A;  1TK7 A;  4E5R A;  2JXW A;  1WR7 A;  3M7N A;  2DMV A;  2ITK A;  5AHT A;  2ZQT A;  1K9R A;  2L4J A;  3KAD A;  4QIB A;  2KXQ A;  3ODK A;  3KAF A;  2JMF A;  3TDB A;  1WMV A;  3TCZ A;  3L4H A;  1ZCN A;  3CNG A;  2DK7 A;  2M8J A;  2F21 A;  2M3O W;  5CQ2 A;  1K9Q A;  4REX A;  3LE4 A;  4U85 A;  2ZQV A;  1NMV A;  2DK1 A;  3KAB A;  2ZR5 A;  2ZR4 A;  3KAG A;  2EZ5 W;  2XP7 A;  3KAH A;  2XP3 A;  1PIN A;  3WH0 A;  1JMQ A;  2YSI A;  2E45 A;  2XPB A;  3OOB A;  3TC5 A;  2DWV A;  2Q5A A;  2DJY A;  2JV4 A;  3KCE A;  2YSG A;  1EG3 A;  2M8I A;  2BA1 A;  2XP9 A;  2XP4 A;  2XP5 A;  3NTP A;  4U84 A;  1EG4 A;  2XPA A;  3KAI A;  1F8A B;  2ZR6 A;  2LAJ A;  2RE3 A;  2ZAJ A;  1I5H W; 
#chains in the Genus database with same CATH topology
 2XP6 A;  2ZQU A;  2XP8 A;  4A0T A;  2YAJ B;  2YSF A;  2YSB A;  3MQG A;  5E65 A;  2YSH A;  4U86 A;  4A0U A;  2MDI A;  2ZQS A;  1YW5 A;  3M85 A;  1RP5 A;  1O6W A;  2JX8 A;  3FSB A;  1TK7 A;  4E5R A;  2JXW A;  5E64 A;  1WR7 A;  3M7N A;  2DMV A;  3PQH A;  5U47 A;  2ITK A;  5AHT A;  2ZQT A;  3FSC A;  1K9R A;  2L4J A;  3KAD A;  4QIB A;  2KXQ A;  3ODK A;  3KAF A;  2JMF A;  3TDB A;  1WMV A;  3TCZ A;  3L4H A;  2WAD A;  1ZCN A;  2WAE A;  5E5W A;  3CNG A;  3LKX B;  1TR8 A;  3FS8 A;  3MCB A;  2DK7 A;  2M8J A;  2F21 A;  2M3O W;  5CQ2 A;  5E66 A;  1K9Q A;  4REX A;  4GLX A;  3LE4 A;  4U85 A;  2ZQV A;  1NMV A;  2DK1 A;  1FLC A;  3KAB A;  2ZR5 A;  2ZR4 A;  3KAG A;  2EZ5 W;  2OWO A;  2XP7 A;  3KAH A;  2XP3 A;  1PIN A;  3WH0 A;  1JMQ A;  2YSI A;  2E45 A;  2XPB A;  3OOB A;  3TC5 A;  2DWV A;  2Q5A A;  2DJY A;  2JV4 A;  3KCE A;  2YSG A;  1EG3 A;  2M8I A;  2BA1 A;  2XP9 A;  2Y8N B;  3MQH A;  2XP4 A;  2XP5 A;  3NTP A;  4U84 A;  1EG4 A;  2XPA A;  2QRV A;  3KAI A;  1F8A B;  3LKX A;  2ZR6 A;  2LAJ A;  3MCB B;  2RE3 A;  2ZAJ A;  1I5H W;  5E62 A; 
#chains in the Genus database with same CATH homology
 2XP6 A;  2ZQU A;  2XP8 A;  4A0T A;  2YAJ B;  2YSF A;  2YSB A;  3MQG A;  5E65 A;  2YSH A;  4U86 A;  4A0U A;  2MDI A;  2ZQS A;  1YW5 A;  3M85 A;  1RP5 A;  1O6W A;  2JX8 A;  3FSB A;  1TK7 A;  4E5R A;  2JXW A;  5E64 A;  1WR7 A;  3M7N A;  2DMV A;  3PQH A;  5U47 A;  2ITK A;  5AHT A;  2ZQT A;  3FSC A;  1K9R A;  2L4J A;  3KAD A;  4QIB A;  2KXQ A;  3ODK A;  3KAF A;  2JMF A;  3TDB A;  1WMV A;  3TCZ A;  3L4H A;  2WAD A;  1ZCN A;  2WAE A;  5E5W A;  3CNG A;  3LKX B;  1TR8 A;  3FS8 A;  3MCB A;  2DK7 A;  2M8J A;  2F21 A;  2M3O W;  5CQ2 A;  5E66 A;  1K9Q A;  4REX A;  4GLX A;  3LE4 A;  4U85 A;  2ZQV A;  1NMV A;  2DK1 A;  1FLC A;  3KAB A;  2ZR5 A;  2ZR4 A;  3KAG A;  2EZ5 W;  2OWO A;  2XP7 A;  3KAH A;  2XP3 A;  1PIN A;  3WH0 A;  1JMQ A;  2YSI A;  2E45 A;  2XPB A;  3OOB A;  3TC5 A;  2DWV A;  2Q5A A;  2DJY A;  2JV4 A;  3KCE A;  2YSG A;  1EG3 A;  2M8I A;  2BA1 A;  2XP9 A;  2Y8N B;  3MQH A;  2XP4 A;  2XP5 A;  3NTP A;  4U84 A;  1EG4 A;  2XPA A;  2QRV A;  3KAI A;  1F8A B;  3LKX A;  2ZR6 A;  2LAJ A;  3MCB B;  2RE3 A;  2ZAJ A;  1I5H W;  5E62 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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