2MDIA

Solution structure of the pp2ww mutant (kpp2ww) of hypb
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
56
structure length
56
Chain Sequence
GSDLPPPSPPAAATIVLPPNWKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (10-13)TI3 (12-15)TI4 (18-21)S2 (30-35)TI5 (36-39)TIV3 (35-38)S3 (40-42)TIV4 (42-45)EMPTYTI6 (51-54)TI7 (52-55)TVIII1 (47-50)S1 (22-26)Updating...
connected with : NaN
molecule tags Transferase
source organism Homo sapiens
publication title Autoinhibitory structure of the WW domain of HYPB/SETD2 regulates its interaction with the proline-rich region of huntingtin.
pubmed doi rcsb
molecule keywords Histone-lysine N-methyltransferase SETD2
total genus 2
structure length 56
sequence length 56
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2013-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2mdiA00
2ZQUA 2XPBA 1EG3A 4U85A 4U84A 2E45A 5CQ2A 2DK1A 2JMFA 2MDIA 4E5RA 5AHTA 3M85A 2ITKA 2DWVA 3KABA 2XPAA 2XP6A 2YSGA 3TC5A 3LE4A 1NMVA 2DK7A 2YSFA 2JX8A 3KAIA 2F21A 3KAFA 1WR7A 3KAHA 2YSIA 1I5HW 3TCZA 3KADA 1ZCNA 2ZQSA 2ZR5A 2BA1A 1EG4A 2XP7A 2KXQA 2ZR6A 3CNGA 2XP4A 2YSBA 3OOBA 2M3OW 2DJYA 1K9RA 1JMQA 1WMVA 2ZR4A 2XP5A 2XP3A 1K9QA 2EZ5W 1O6WA 2L4JA 1PINA 3WH0A 2M8JA 3ODKA 1YW5A 2Q5AA 2M8IA 4REXA 2ZQVA 2JXWA 3KCEA 2XP9A 3TDBA 3M7NA 2ZAJA 2LAJA 2YSHA 2XP8A 3NTPA 1TK7A 1F8AB 2RE3A 4QIBA 2JV4A 2ZQTA 3KAGA 4U86A 2DMVA 3L4HA
chains in the Genus database with same CATH superfamily
2ZQUA 2XPBA 1EG3A 5E66A 4U85A 4U84A 2E45A 5CQ2A 2DK1A 3MCBA 2JMFA 2MDIA 4E5RA 5AHTA 3M85A 2ITKA 2DWVA 2Y8NB 3KABA 2XPAA 2XP6A 2YSGA 3LKXA 3TC5A 3LE4A 1NMVA 2DK7A 2YSFA 2JX8A 2YAJB 3KAIA 2F21A 3KAFA 1WR7A 3KAHA 2YSIA 1I5HW 5E62A 3TCZA 3KADA 3FS8A 1ZCNA 5E65A 3MCBB 4A0TA 2ZQSA 2ZR5A 2BA1A 1EG4A 2XP7A 2KXQA 2ZR6A 3CNGA 2XP4A 2YSBA 5E64A 2OWOA 3OOBA 2M3OW 2DJYA 3MQGA 3PQHA 1K9RA 1JMQA 3LKXB 1WMVA 2ZR4A 2XP5A 2XP3A 1K9QA 4GLXA 2EZ5W 1TR8A 3FSCA 1O6WA 2L4JA 1PINA 3WH0A 5E5WA 2M8JA 3ODKA 1YW5A 1FLCA 1RP5A 2Q5AA 2M8IA 4REXA 2QRVA 2ZQVA 2JXWA 3KCEA 2XP9A 3TDBA 3M7NA 2ZAJA 2LAJA 2YSHA 5U47A 2XP8A 3NTPA 1TK7A 1F8AB 2RE3A 3MQHA 4QIBA 2WADA 2JV4A 2ZQTA 3FSBA 3KAGA 2WAEA 4A0UA 4U86A 2DMVA 3L4HA
chains in the Genus database with same CATH topology
2ZQUA 2XPBA 1EG3A 5E66A 4U85A 4U84A 2E45A 5CQ2A 2DK1A 3MCBA 2JMFA 2MDIA 4E5RA 5AHTA 3M85A 2ITKA 2DWVA 2Y8NB 3KABA 2XPAA 2XP6A 2YSGA 3LKXA 3TC5A 3LE4A 1NMVA 2DK7A 2YSFA 2JX8A 2YAJB 3KAIA 2F21A 3KAFA 1WR7A 3KAHA 2YSIA 1I5HW 5E62A 3TCZA 3KADA 3FS8A 1ZCNA 5E65A 3MCBB 4A0TA 2ZQSA 2ZR5A 2BA1A 1EG4A 2XP7A 2KXQA 2ZR6A 3CNGA 2XP4A 2YSBA 5E64A 2OWOA 3OOBA 2M3OW 2DJYA 3MQGA 3PQHA 1K9RA 1JMQA 3LKXB 1WMVA 2ZR4A 2XP5A 2XP3A 1K9QA 4GLXA 2EZ5W 1TR8A 3FSCA 1O6WA 2L4JA 1PINA 3WH0A 5E5WA 2M8JA 3ODKA 1YW5A 1FLCA 1RP5A 2Q5AA 2M8IA 4REXA 2QRVA 2ZQVA 2JXWA 3KCEA 2XP9A 3TDBA 3M7NA 2ZAJA 2LAJA 2YSHA 5U47A 2XP8A 3NTPA 1TK7A 1F8AB 2RE3A 3MQHA 4QIBA 2WADA 2JV4A 2ZQTA 3FSBA 3KAGA 2WAEA 4A0UA 4U86A 2DMVA 3L4HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZQU A;  2XPB A;  1EG3 A;  4U85 A;  4U84 A;  2E45 A;  5CQ2 A;  2DK1 A;  2JMF A;  2MDI A;  4E5R A;  5AHT A;  3M85 A;  2ITK A;  2DWV A;  3KAB A;  2XPA A;  2XP6 A;  2YSG A;  3TC5 A;  3LE4 A;  1NMV A;  2DK7 A;  2YSF A;  2JX8 A;  3KAI A;  2F21 A;  3KAF A;  1WR7 A;  3KAH A;  2YSI A;  1I5H W;  3TCZ A;  3KAD A;  1ZCN A;  2ZQS A;  2ZR5 A;  2BA1 A;  1EG4 A;  2XP7 A;  2KXQ A;  2ZR6 A;  3CNG A;  2XP4 A;  2YSB A;  3OOB A;  2M3O W;  2DJY A;  1K9R A;  1JMQ A;  1WMV A;  2ZR4 A;  2XP5 A;  2XP3 A;  1K9Q A;  2EZ5 W;  1O6W A;  2L4J A;  1PIN A;  3WH0 A;  2M8J A;  3ODK A;  1YW5 A;  2Q5A A;  2M8I A;  4REX A;  2ZQV A;  2JXW A;  3KCE A;  2XP9 A;  3TDB A;  3M7N A;  2ZAJ A;  2LAJ A;  2YSH A;  2XP8 A;  3NTP A;  1TK7 A;  1F8A B;  2RE3 A;  4QIB A;  2JV4 A;  2ZQT A;  3KAG A;  4U86 A;  2DMV A;  3L4H A; 
#chains in the Genus database with same CATH topology
 2ZQU A;  2XPB A;  1EG3 A;  5E66 A;  4U85 A;  4U84 A;  2E45 A;  5CQ2 A;  2DK1 A;  3MCB A;  2JMF A;  2MDI A;  4E5R A;  5AHT A;  3M85 A;  2ITK A;  2DWV A;  2Y8N B;  3KAB A;  2XPA A;  2XP6 A;  2YSG A;  3LKX A;  3TC5 A;  3LE4 A;  1NMV A;  2DK7 A;  2YSF A;  2JX8 A;  2YAJ B;  3KAI A;  2F21 A;  3KAF A;  1WR7 A;  3KAH A;  2YSI A;  1I5H W;  5E62 A;  3TCZ A;  3KAD A;  3FS8 A;  1ZCN A;  5E65 A;  3MCB B;  4A0T A;  2ZQS A;  2ZR5 A;  2BA1 A;  1EG4 A;  2XP7 A;  2KXQ A;  2ZR6 A;  3CNG A;  2XP4 A;  2YSB A;  5E64 A;  2OWO A;  3OOB A;  2M3O W;  2DJY A;  3MQG A;  3PQH A;  1K9R A;  1JMQ A;  3LKX B;  1WMV A;  2ZR4 A;  2XP5 A;  2XP3 A;  1K9Q A;  4GLX A;  2EZ5 W;  1TR8 A;  3FSC A;  1O6W A;  2L4J A;  1PIN A;  3WH0 A;  5E5W A;  2M8J A;  3ODK A;  1YW5 A;  1FLC A;  1RP5 A;  2Q5A A;  2M8I A;  4REX A;  2QRV A;  2ZQV A;  2JXW A;  3KCE A;  2XP9 A;  3TDB A;  3M7N A;  2ZAJ A;  2LAJ A;  2YSH A;  5U47 A;  2XP8 A;  3NTP A;  1TK7 A;  1F8A B;  2RE3 A;  3MQH A;  4QIB A;  2WAD A;  2JV4 A;  2ZQT A;  3FSB A;  3KAG A;  2WAE A;  4A0U A;  4U86 A;  2DMV A;  3L4H A; 
#chains in the Genus database with same CATH homology
 2ZQU A;  2XPB A;  1EG3 A;  5E66 A;  4U85 A;  4U84 A;  2E45 A;  5CQ2 A;  2DK1 A;  3MCB A;  2JMF A;  2MDI A;  4E5R A;  5AHT A;  3M85 A;  2ITK A;  2DWV A;  2Y8N B;  3KAB A;  2XPA A;  2XP6 A;  2YSG A;  3LKX A;  3TC5 A;  3LE4 A;  1NMV A;  2DK7 A;  2YSF A;  2JX8 A;  2YAJ B;  3KAI A;  2F21 A;  3KAF A;  1WR7 A;  3KAH A;  2YSI A;  1I5H W;  5E62 A;  3TCZ A;  3KAD A;  3FS8 A;  1ZCN A;  5E65 A;  3MCB B;  4A0T A;  2ZQS A;  2ZR5 A;  2BA1 A;  1EG4 A;  2XP7 A;  2KXQ A;  2ZR6 A;  3CNG A;  2XP4 A;  2YSB A;  5E64 A;  2OWO A;  3OOB A;  2M3O W;  2DJY A;  3MQG A;  3PQH A;  1K9R A;  1JMQ A;  3LKX B;  1WMV A;  2ZR4 A;  2XP5 A;  2XP3 A;  1K9Q A;  4GLX A;  2EZ5 W;  1TR8 A;  3FSC A;  1O6W A;  2L4J A;  1PIN A;  3WH0 A;  5E5W A;  2M8J A;  3ODK A;  1YW5 A;  1FLC A;  1RP5 A;  2Q5A A;  2M8I A;  4REX A;  2QRV A;  2ZQV A;  2JXW A;  3KCE A;  2XP9 A;  3TDB A;  3M7N A;  2ZAJ A;  2LAJ A;  2YSH A;  5U47 A;  2XP8 A;  3NTP A;  1TK7 A;  1F8A B;  2RE3 A;  3MQH A;  4QIB A;  2WAD A;  2JV4 A;  2ZQT A;  3FSB A;  3KAG A;  2WAE A;  4A0U A;  4U86 A;  2DMV A;  3L4H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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