2RE3 | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	183
structure length	183
Chain Sequence	SADGLLASARAIKSKGPAPVHLWNPPFNGDIDMRIARDGTWFYQGTPINRPAMVRLFSSILKREEDRFYLVTPVEKVGIRVDDAPFVAVDVEVAGQGRKQVLTFTTHVGDSAVAGEGNPIRMAQDPATGEPAPYVHVRAGLEALIDRKSFYRLMDLGEIEDGWFGLWSSGSFFPLMTVEELER

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Silicibacter pomeroyi dss-3
publication title	Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction. pubmed doi rcsb
molecule keywords	Uncharacterized protein
total genus	40
structure length	183
sequence length	183
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-09-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF06938	DUF1285	Protein of unknown function (DUF1285)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.70.10	Mainly Beta	Single Sheet	Ubiquitin Ligase Nedd4; Chain: W;	Ubiquitin Ligase Nedd4; Chain: W;	2re3A03
2.30.270.10	Mainly Beta	Roll	duf1285 protein fold	duf1285 protein	2re3A02
3.10.540.10	Alpha Beta	Roll	duf1285 like fold	duf1285 like domain	2re3A01

4E5RA 2JV4A 1JMQA 1K9RA 2ZAJA 1F8AB 3TDBA 2JMFA 1O6WA 2XPAA 2XP3A 2DJYA 1NMVA 2DWVA 2ZQTA 2DK7A 1ZCNA 2Q5AA 1TK7A 2LAJA 4REXA 3OOBA 3KAIA 2YSIA 4U86A 3KADA 2L4JA 3KAFA 2KXQA 2E45A 2ZR5A 3M85A 2XP5A 2M3OW 2ZR6A 2F21A 4U85A 3CNGA 2XP6A 2XP8A 2JX8A 2DMVA 2M8IA 2ZQVA 3L4HA 2RA9A 1K9QA 2MDIA 2ZR4A 2XP9A 2RE3A 3NTPA 3WH0A 3KAHA 2ZQSA 1I5HW 2XPBA 2DK1A 2YSFA 3TCZA 3M7NA 2XP7A 3KCEA 5AHTA 1WMVA 3KABA 3LE4A 3KAGA 2EZ5W 2BA1A 5CQ2A 2ITKA 1PINA 1WR7A 1EG4A 2YSBA 1YW5A 2JXWA 2M8JA 3ODKA 2YSGA 2YSHA 3TC5A 2ZQUA 4QIBA 4U84A 1EG3A 2XP4A
chains in the Genus database with same CATH superfamily

4E5RA 1W4AA 2JV4A 1JMQA 1K9RA 1W46A 2ZAJA 1F8AB 3TDBA 2Y8NB 2JMFA 1O6WA 2OWOA 2XPAA 2XP3A 3IMNA 2DJYA 1NMVA 2DWVA 2ZQTA 2VHJA 2DK7A 1W49A 1ZCNA 2Q5AA 1TK7A 3INAA 2LAJA 4REXA 1FLCA 3OOBA 4A0TA 1W47A 1W44A 1W4BA 2YAJB 3KAIA 2YSIA 1TR8A 4BLRA 5E62A 4U86A 5E66A 5E64A 3KADA 2L4JA 3KAFA 2KXQA 2E45A 2ZR5A 3LKXB 2VHTA 3M85A 2XP5A 5U47A 1RP5A 2M3OW 3MCBA 2ZR6A 2F21A 4U85A 2WADA 1W48A 3CNGA 2XP6A 2XP8A 2JX8A 1YWYA 2DMVA 2M8IA 2ZQVA 3L4HA 5E65A 2RA9A 1K9QA 2MDIA 3PQHA 2ZR4A 2XP9A 2VHUA 2RE3A 3NTPA 4BLTA 1W4CA 3WH0A 3KAHA 2ZQSA 1I5HW 2XPBA 2DK1A 2QRVA 2YSFA 3TCZA 3M7NA 3IN9A 2XP7A 3KCEA 5AHTA 1WMVA 3FSCA 3KABA 3LE4A 3KAGA 2EZ5W 2BA1A 5CQ2A 2ITKA 4A0UA 1PINA 1WR7A 1EG4A 2YSBA 1YW5A 2JXWA 3LKXA 2VHQA 3FS8A 2M8JA 3MQGA 3ODKA 2YSGA 2VHCA 3IKWA 2YSHA 3TC5A 2ZQUA 4QIBA 4BLSA 3MCBB 2WAEA 5E5WA 4U84A 4GLXA 3FSBA 3ILRA 3MQHA 1EG3A 2XP4A
chains in the Genus database with same CATH topology

4E5RA 2JV4A 1JMQA 1K9RA 2ZAJA 1F8AB 3TDBA 2Y8NB 2JMFA 1O6WA 2OWOA 2XPAA 2XP3A 2DJYA 1NMVA 2DWVA 2ZQTA 2DK7A 1ZCNA 2Q5AA 1TK7A 2LAJA 4REXA 1FLCA 3OOBA 4A0TA 2YAJB 3KAIA 2YSIA 1TR8A 5E62A 4U86A 5E66A 5E64A 3KADA 2L4JA 3KAFA 2KXQA 2E45A 2ZR5A 3LKXB 3M85A 2XP5A 5U47A 1RP5A 2M3OW 3MCBA 2ZR6A 2F21A 4U85A 2WADA 3CNGA 2XP6A 2XP8A 2JX8A 2DMVA 2M8IA 2ZQVA 3L4HA 5E65A 2RA9A 1K9QA 2MDIA 3PQHA 2ZR4A 2XP9A 2RE3A 3NTPA 3WH0A 3KAHA 2ZQSA 1I5HW 2XPBA 2DK1A 2QRVA 2YSFA 3TCZA 3M7NA 2XP7A 3KCEA 5AHTA 1WMVA 3FSCA 3KABA 3LE4A 3KAGA 2EZ5W 2BA1A 5CQ2A 2ITKA 4A0UA 1PINA 1WR7A 1EG4A 2YSBA 1YW5A 2JXWA 3LKXA 3FS8A 2M8JA 3MQGA 3ODKA 2YSGA 2YSHA 3TC5A 2ZQUA 4QIBA 3MCBB 2WAEA 5E5WA 4U84A 4GLXA 3FSBA 3MQHA 1EG3A 2XP4A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4E5R A;  2JV4 A;  1JMQ A;  1K9R A;  2ZAJ A;  1F8A B;  3TDB A;  2JMF A;  1O6W A;  2XPA A;  2XP3 A;  2DJY A;  1NMV A;  2DWV A;  2ZQT A;  2DK7 A;  1ZCN A;  2Q5A A;  1TK7 A;  2LAJ A;  4REX A;  3OOB A;  3KAI A;  2YSI A;  4U86 A;  3KAD A;  2L4J A;  3KAF A;  2KXQ A;  2E45 A;  2ZR5 A;  3M85 A;  2XP5 A;  2M3O W;  2ZR6 A;  2F21 A;  4U85 A;  3CNG A;  2XP6 A;  2XP8 A;  2JX8 A;  2DMV A;  2M8I A;  2ZQV A;  3L4H A;  2RA9 A;  1K9Q A;  2MDI A;  2ZR4 A;  2XP9 A;  2RE3 A;  3NTP A;  3WH0 A;  3KAH A;  2ZQS A;  1I5H W;  2XPB A;  2DK1 A;  2YSF A;  3TCZ A;  3M7N A;  2XP7 A;  3KCE A;  5AHT A;  1WMV A;  3KAB A;  3LE4 A;  3KAG A;  2EZ5 W;  2BA1 A;  5CQ2 A;  2ITK A;  1PIN A;  1WR7 A;  1EG4 A;  2YSB A;  1YW5 A;  2JXW A;  2M8J A;  3ODK A;  2YSG A;  2YSH A;  3TC5 A;  2ZQU A;  4QIB A;  4U84 A;  1EG3 A;  2XP4 A; 
#chains in the Genus database with same CATH topology
 4E5R A;  1W4A A;  2JV4 A;  1JMQ A;  1K9R A;  1W46 A;  2ZAJ A;  1F8A B;  3TDB A;  2Y8N B;  2JMF A;  1O6W A;  2OWO A;  2XPA A;  2XP3 A;  3IMN A;  2DJY A;  1NMV A;  2DWV A;  2ZQT A;  2VHJ A;  2DK7 A;  1W49 A;  1ZCN A;  2Q5A A;  1TK7 A;  3INA A;  2LAJ A;  4REX A;  1FLC A;  3OOB A;  4A0T A;  1W47 A;  1W44 A;  1W4B A;  2YAJ B;  3KAI A;  2YSI A;  1TR8 A;  4BLR A;  5E62 A;  4U86 A;  5E66 A;  5E64 A;  3KAD A;  2L4J A;  3KAF A;  2KXQ A;  2E45 A;  2ZR5 A;  3LKX B;  2VHT A;  3M85 A;  2XP5 A;  5U47 A;  1RP5 A;  2M3O W;  3MCB A;  2ZR6 A;  2F21 A;  4U85 A;  2WAD A;  1W48 A;  3CNG A;  2XP6 A;  2XP8 A;  2JX8 A;  1YWY A;  2DMV A;  2M8I A;  2ZQV A;  3L4H A;  5E65 A;  2RA9 A;  1K9Q A;  2MDI A;  3PQH A;  2ZR4 A;  2XP9 A;  2VHU A;  2RE3 A;  3NTP A;  4BLT A;  1W4C A;  3WH0 A;  3KAH A;  2ZQS A;  1I5H W;  2XPB A;  2DK1 A;  2QRV A;  2YSF A;  3TCZ A;  3M7N A;  3IN9 A;  2XP7 A;  3KCE A;  5AHT A;  1WMV A;  3FSC A;  3KAB A;  3LE4 A;  3KAG A;  2EZ5 W;  2BA1 A;  5CQ2 A;  2ITK A;  4A0U A;  1PIN A;  1WR7 A;  1EG4 A;  2YSB A;  1YW5 A;  2JXW A;  3LKX A;  2VHQ A;  3FS8 A;  2M8J A;  3MQG A;  3ODK A;  2YSG A;  2VHC A;  3IKW A;  2YSH A;  3TC5 A;  2ZQU A;  4QIB A;  4BLS A;  3MCB B;  2WAE A;  5E5W A;  4U84 A;  4GLX A;  3FSB A;  3ILR A;  3MQH A;  1EG3 A;  2XP4 A; 
#chains in the Genus database with same CATH homology
 4E5R A;  2JV4 A;  1JMQ A;  1K9R A;  2ZAJ A;  1F8A B;  3TDB A;  2Y8N B;  2JMF A;  1O6W A;  2OWO A;  2XPA A;  2XP3 A;  2DJY A;  1NMV A;  2DWV A;  2ZQT A;  2DK7 A;  1ZCN A;  2Q5A A;  1TK7 A;  2LAJ A;  4REX A;  1FLC A;  3OOB A;  4A0T A;  2YAJ B;  3KAI A;  2YSI A;  1TR8 A;  5E62 A;  4U86 A;  5E66 A;  5E64 A;  3KAD A;  2L4J A;  3KAF A;  2KXQ A;  2E45 A;  2ZR5 A;  3LKX B;  3M85 A;  2XP5 A;  5U47 A;  1RP5 A;  2M3O W;  3MCB A;  2ZR6 A;  2F21 A;  4U85 A;  2WAD A;  3CNG A;  2XP6 A;  2XP8 A;  2JX8 A;  2DMV A;  2M8I A;  2ZQV A;  3L4H A;  5E65 A;  2RA9 A;  1K9Q A;  2MDI A;  3PQH A;  2ZR4 A;  2XP9 A;  2RE3 A;  3NTP A;  3WH0 A;  3KAH A;  2ZQS A;  1I5H W;  2XPB A;  2DK1 A;  2QRV A;  2YSF A;  3TCZ A;  3M7N A;  2XP7 A;  3KCE A;  5AHT A;  1WMV A;  3FSC A;  3KAB A;  3LE4 A;  3KAG A;  2EZ5 W;  2BA1 A;  5CQ2 A;  2ITK A;  4A0U A;  1PIN A;  1WR7 A;  1EG4 A;  2YSB A;  1YW5 A;  2JXW A;  3LKX A;  3FS8 A;  2M8J A;  3MQG A;  3ODK A;  2YSG A;  2YSH A;  3TC5 A;  2ZQU A;  4QIB A;  3MCB B;  2WAE A;  5E5W A;  4U84 A;  4GLX A;  3FSB A;  3MQH A;  1EG3 A;  2XP4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2RE3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations