2YSBA

Solution structure of the first ww domain from the mouse salvador homolog 1 protein (sav1)
Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
49
structure length
49
Chain Sequence
GSSGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (10-12)TVIII1 (37-40)S1 (16-21)TII1 (13-16)S2 (25-30)TI1 (30-33)S3 (35-37)TI3 (40-43)Updating...
connected with : NaN
molecule tags Protein binding
source organism Mus musculus
publication title Solution structure of the first WW domain from the mouse salvador homolog 1 protein (SAV1)
rcsb
molecule keywords Salvador homolog 1 protein
total genus 3
structure length 49
sequence length 49
ec nomenclature
pdb deposition date 2007-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 2ysbA01
1WR7A 3TC5A 4U84A 2JXWA 1EG3A 2YSHA 2XP8A 2JX8A 2Q5AA 2KXQA 1NMVA 4QIBA 3KABA 2ZQTA 2ZR5A 3KCEA 2YSGA 2F21A 2ZQVA 3KAFA 3TDBA 3KAIA 2BA1A 2XP5A 2XP4A 2DK1A 2ZR4A 2XPAA 2ZR6A 2XP7A 2XP9A 3NTPA 2L4JA 2RE3A 3KAHA 3L4HA 4U86A 5AHTA 1I5HW 1F8AB 2DWVA 2ZQSA 1O6WA 2EZ5W 4U85A 2LAJA 2XP3A 1TK7A 5CQ2A 1PINA 1ZCNA 3M85A 4REXA 2YSFA 1WMVA 2XP6A 4E5RA 3LE4A 2JV4A 2DJYA 2YSBA 2M8JA 3M7NA 3TCZA 2DK7A 3WH0A 3CNGA 3OOBA 1JMQA 2YSIA 1EG4A 1YW5A 2MDIA 3KAGA 2JMFA 3ODKA 2M3OW 2DMVA 3KADA 2XPBA 2ITKA 2E45A 2ZQUA 1K9RA 2ZAJA 2M8IA 1K9QA
chains in the Genus database with same CATH superfamily
3FSCA 1WR7A 3TC5A 4U84A 2JXWA 1EG3A 1FLCA 5E64A 2YSHA 2XP8A 2JX8A 2Q5AA 2KXQA 5E66A 1NMVA 4QIBA 3KABA 2ZQTA 2ZR5A 3KCEA 3LKXA 2YSGA 3LKXB 2F21A 2ZQVA 3KAFA 3MQGA 3TDBA 3KAIA 2BA1A 2XP5A 2XP4A 1RP5A 2OWOA 2YAJB 2DK1A 2ZR4A 2XPAA 5E65A 2ZR6A 5E62A 2XP7A 2XP9A 2WAEA 3NTPA 2L4JA 2RE3A 3KAHA 3L4HA 4U86A 5AHTA 1I5HW 1F8AB 4A0UA 2DWVA 2ZQSA 5E5WA 3FS8A 3MQHA 3MCBA 3MCBB 2QRVA 1O6WA 4A0TA 2EZ5W 3PQHA 4U85A 2LAJA 2WADA 2XP3A 1TK7A 5CQ2A 5U47A 1PINA 1ZCNA 3M85A 4REXA 2YSFA 1TR8A 1WMVA 2XP6A 4E5RA 3LE4A 2JV4A 2DJYA 2YSBA 2M8JA 3M7NA 3TCZA 2DK7A 3WH0A 3CNGA 3OOBA 1JMQA 2YSIA 1EG4A 1YW5A 2MDIA 3FSBA 2Y8NB 4GLXA 3KAGA 2JMFA 3ODKA 2M3OW 2DMVA 3KADA 2XPBA 2ITKA 2E45A 2ZQUA 1K9RA 2ZAJA 2M8IA 1K9QA
chains in the Genus database with same CATH topology
3FSCA 1WR7A 3TC5A 4U84A 2JXWA 1EG3A 1FLCA 5E64A 2YSHA 2XP8A 2JX8A 2Q5AA 2KXQA 5E66A 1NMVA 4QIBA 3KABA 2ZQTA 2ZR5A 3KCEA 3LKXA 2YSGA 3LKXB 2F21A 2ZQVA 3KAFA 3MQGA 3TDBA 3KAIA 2BA1A 2XP5A 2XP4A 1RP5A 2OWOA 2YAJB 2DK1A 2ZR4A 2XPAA 5E65A 2ZR6A 5E62A 2XP7A 2XP9A 2WAEA 3NTPA 2L4JA 2RE3A 3KAHA 3L4HA 4U86A 5AHTA 1I5HW 1F8AB 4A0UA 2DWVA 2ZQSA 5E5WA 3FS8A 3MQHA 3MCBA 3MCBB 2QRVA 1O6WA 4A0TA 2EZ5W 3PQHA 4U85A 2LAJA 2WADA 2XP3A 1TK7A 5CQ2A 5U47A 1PINA 1ZCNA 3M85A 4REXA 2YSFA 1TR8A 1WMVA 2XP6A 4E5RA 3LE4A 2JV4A 2DJYA 2YSBA 2M8JA 3M7NA 3TCZA 2DK7A 3WH0A 3CNGA 3OOBA 1JMQA 2YSIA 1EG4A 1YW5A 2MDIA 3FSBA 2Y8NB 4GLXA 3KAGA 2JMFA 3ODKA 2M3OW 2DMVA 3KADA 2XPBA 2ITKA 2E45A 2ZQUA 1K9RA 2ZAJA 2M8IA 1K9QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WR7 A;  3TC5 A;  4U84 A;  2JXW A;  1EG3 A;  2YSH A;  2XP8 A;  2JX8 A;  2Q5A A;  2KXQ A;  1NMV A;  4QIB A;  3KAB A;  2ZQT A;  2ZR5 A;  3KCE A;  2YSG A;  2F21 A;  2ZQV A;  3KAF A;  3TDB A;  3KAI A;  2BA1 A;  2XP5 A;  2XP4 A;  2DK1 A;  2ZR4 A;  2XPA A;  2ZR6 A;  2XP7 A;  2XP9 A;  3NTP A;  2L4J A;  2RE3 A;  3KAH A;  3L4H A;  4U86 A;  5AHT A;  1I5H W;  1F8A B;  2DWV A;  2ZQS A;  1O6W A;  2EZ5 W;  4U85 A;  2LAJ A;  2XP3 A;  1TK7 A;  5CQ2 A;  1PIN A;  1ZCN A;  3M85 A;  4REX A;  2YSF A;  1WMV A;  2XP6 A;  4E5R A;  3LE4 A;  2JV4 A;  2DJY A;  2YSB A;  2M8J A;  3M7N A;  3TCZ A;  2DK7 A;  3WH0 A;  3CNG A;  3OOB A;  1JMQ A;  2YSI A;  1EG4 A;  1YW5 A;  2MDI A;  3KAG A;  2JMF A;  3ODK A;  2M3O W;  2DMV A;  3KAD A;  2XPB A;  2ITK A;  2E45 A;  2ZQU A;  1K9R A;  2ZAJ A;  2M8I A;  1K9Q A; 
#chains in the Genus database with same CATH topology
 3FSC A;  1WR7 A;  3TC5 A;  4U84 A;  2JXW A;  1EG3 A;  1FLC A;  5E64 A;  2YSH A;  2XP8 A;  2JX8 A;  2Q5A A;  2KXQ A;  5E66 A;  1NMV A;  4QIB A;  3KAB A;  2ZQT A;  2ZR5 A;  3KCE A;  3LKX A;  2YSG A;  3LKX B;  2F21 A;  2ZQV A;  3KAF A;  3MQG A;  3TDB A;  3KAI A;  2BA1 A;  2XP5 A;  2XP4 A;  1RP5 A;  2OWO A;  2YAJ B;  2DK1 A;  2ZR4 A;  2XPA A;  5E65 A;  2ZR6 A;  5E62 A;  2XP7 A;  2XP9 A;  2WAE A;  3NTP A;  2L4J A;  2RE3 A;  3KAH A;  3L4H A;  4U86 A;  5AHT A;  1I5H W;  1F8A B;  4A0U A;  2DWV A;  2ZQS A;  5E5W A;  3FS8 A;  3MQH A;  3MCB A;  3MCB B;  2QRV A;  1O6W A;  4A0T A;  2EZ5 W;  3PQH A;  4U85 A;  2LAJ A;  2WAD A;  2XP3 A;  1TK7 A;  5CQ2 A;  5U47 A;  1PIN A;  1ZCN A;  3M85 A;  4REX A;  2YSF A;  1TR8 A;  1WMV A;  2XP6 A;  4E5R A;  3LE4 A;  2JV4 A;  2DJY A;  2YSB A;  2M8J A;  3M7N A;  3TCZ A;  2DK7 A;  3WH0 A;  3CNG A;  3OOB A;  1JMQ A;  2YSI A;  1EG4 A;  1YW5 A;  2MDI A;  3FSB A;  2Y8N B;  4GLX A;  3KAG A;  2JMF A;  3ODK A;  2M3O W;  2DMV A;  3KAD A;  2XPB A;  2ITK A;  2E45 A;  2ZQU A;  1K9R A;  2ZAJ A;  2M8I A;  1K9Q A; 
#chains in the Genus database with same CATH homology
 3FSC A;  1WR7 A;  3TC5 A;  4U84 A;  2JXW A;  1EG3 A;  1FLC A;  5E64 A;  2YSH A;  2XP8 A;  2JX8 A;  2Q5A A;  2KXQ A;  5E66 A;  1NMV A;  4QIB A;  3KAB A;  2ZQT A;  2ZR5 A;  3KCE A;  3LKX A;  2YSG A;  3LKX B;  2F21 A;  2ZQV A;  3KAF A;  3MQG A;  3TDB A;  3KAI A;  2BA1 A;  2XP5 A;  2XP4 A;  1RP5 A;  2OWO A;  2YAJ B;  2DK1 A;  2ZR4 A;  2XPA A;  5E65 A;  2ZR6 A;  5E62 A;  2XP7 A;  2XP9 A;  2WAE A;  3NTP A;  2L4J A;  2RE3 A;  3KAH A;  3L4H A;  4U86 A;  5AHT A;  1I5H W;  1F8A B;  4A0U A;  2DWV A;  2ZQS A;  5E5W A;  3FS8 A;  3MQH A;  3MCB A;  3MCB B;  2QRV A;  1O6W A;  4A0T A;  2EZ5 W;  3PQH A;  4U85 A;  2LAJ A;  2WAD A;  2XP3 A;  1TK7 A;  5CQ2 A;  5U47 A;  1PIN A;  1ZCN A;  3M85 A;  4REX A;  2YSF A;  1TR8 A;  1WMV A;  2XP6 A;  4E5R A;  3LE4 A;  2JV4 A;  2DJY A;  2YSB A;  2M8J A;  3M7N A;  3TCZ A;  2DK7 A;  3WH0 A;  3CNG A;  3OOB A;  1JMQ A;  2YSI A;  1EG4 A;  1YW5 A;  2MDI A;  3FSB A;  2Y8N B;  4GLX A;  3KAG A;  2JMF A;  3ODK A;  2M3O W;  2DMV A;  3KAD A;  2XPB A;  2ITK A;  2E45 A;  2ZQU A;  1K9R A;  2ZAJ A;  2M8I A;  1K9Q A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.