The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
3
|
sequence length |
55
|
structure length |
55
|
Chain Sequence |
PPTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGSIRKHDPPLSSIPC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the dimerization domain of DiGeorge Critical Region 8
pubmed doi rcsb |
| molecule tags |
Nuclear protein
|
| source organism |
Homo sapiens
|
| molecule keywords |
Microprocessor complex subunit DGCR8
|
| total genus |
3
|
| structure length |
55
|
| sequence length |
55
|
| ec nomenclature | |
| pdb deposition date | 2010-01-14 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | Ubiquitin Ligase Nedd4; Chain: W; | Ubiquitin Ligase Nedd4; Chain: W; |
#chains in the Genus database with same CATH superfamily 4QIB A; 2ZQV A; 2YSF A; 2ZQU A; 3M7N A; 2LAJ A; 2RE3 A; 5CQ2 A; 2XPA A; 2M8J A; 3KAH A; 4U85 A; 1EG3 A; 1F8A B; 5AHT A; 3TCZ A; 3LE4 A; 3KAB A; 2EZ5 W; 2ZR5 A; 2ZR6 A; 3WH0 A; 3L4H A; 2XP4 A; 3KAI A; 2JV4 A; 3OOB A; 2JX8 A; 2M8I A; 1YW5 A; 3KCE A; 2ZR4 A; 2XPB A; 2XP5 A; 3TDB A; 2Q5A A; 4U86 A; 2YSB A; 2DMV A; 4U84 A; 2E45 A; 3KAD A; 1PIN A; 2ZQS A; 2YSG A; 2KXQ A; 2XP7 A; 3KAF A; 2F21 A; 2DK7 A; 2XP3 A; 2MDI A; 2XP9 A; 2XP6 A; 1O6W A; 2DWV A; 2JXW A; 2XP8 A; 2DJY A; 3KAG A; 3ODK A; 2ITK A; 1ZCN A; 1K9Q A; 2DK1 A; 1JMQ A; 1K9R A; 2ZQT A; 2ZAJ A; 1I5H W; 3M85 A; 1EG4 A; 2YSI A; 2JMF A; 1TK7 A; 4REX A; 1WR7 A; 1NMV A; 3NTP A; 2BA1 A; 2M3O W; 3CNG A; 2YSH A; 3TC5 A; 4E5R A; 2L4J A; 1WMV A; #chains in the Genus database with same CATH topology 4QIB A; 2WAE A; 5U47 A; 2ZQV A; 2YSF A; 3FS8 A; 2ZQU A; 3M7N A; 2LAJ A; 2RE3 A; 5CQ2 A; 1RP5 A; 2XPA A; 4A0U A; 2M8J A; 3KAH A; 4U85 A; 1EG3 A; 1F8A B; 5AHT A; 3TCZ A; 3LE4 A; 2Y8N B; 4A0T A; 3KAB A; 2EZ5 W; 2ZR5 A; 2ZR6 A; 2QRV A; 3WH0 A; 3L4H A; 2XP4 A; 3KAI A; 2JV4 A; 3OOB A; 1FLC A; 2JX8 A; 2M8I A; 1YW5 A; 3KCE A; 3LKX A; 3MCB A; 5E62 A; 2ZR4 A; 2XPB A; 2YAJ B; 2XP5 A; 3TDB A; 2Q5A A; 4U86 A; 2YSB A; 2DMV A; 4U84 A; 5E66 A; 2E45 A; 3KAD A; 2WAD A; 1PIN A; 2ZQS A; 2YSG A; 4GLX A; 2KXQ A; 2XP7 A; 3KAF A; 2F21 A; 2DK7 A; 2XP3 A; 2MDI A; 2XP9 A; 2XP6 A; 1O6W A; 3MCB B; 2DWV A; 2JXW A; 2XP8 A; 2DJY A; 4E5R A; 3KAG A; 3ODK A; 3MQG A; 5E65 A; 2ITK A; 3PQH A; 2OWO A; 1ZCN A; 1K9Q A; 2DK1 A; 1JMQ A; 1K9R A; 2ZQT A; 2ZAJ A; 1I5H W; 3M85 A; 1EG4 A; 2YSI A; 2JMF A; 1TK7 A; 4REX A; 1WR7 A; 5E64 A; 3LKX B; 1NMV A; 3MQH A; 5E5W A; 3NTP A; 2BA1 A; 3FSC A; 3FSB A; 2M3O W; 3CNG A; 2YSH A; 3TC5 A; 1TR8 A; 2L4J A; 1WMV A; #chains in the Genus database with same CATH homology 4QIB A; 2WAE A; 5U47 A; 2ZQV A; 2YSF A; 3FS8 A; 2ZQU A; 3M7N A; 2LAJ A; 2RE3 A; 5CQ2 A; 1RP5 A; 2XPA A; 4A0U A; 2M8J A; 3KAH A; 4U85 A; 1EG3 A; 1F8A B; 5AHT A; 3TCZ A; 3LE4 A; 2Y8N B; 4A0T A; 3KAB A; 2EZ5 W; 2ZR5 A; 2ZR6 A; 2QRV A; 3WH0 A; 3L4H A; 2XP4 A; 3KAI A; 2JV4 A; 3OOB A; 1FLC A; 2JX8 A; 2M8I A; 1YW5 A; 3KCE A; 3LKX A; 3MCB A; 5E62 A; 2ZR4 A; 2XPB A; 2YAJ B; 2XP5 A; 3TDB A; 2Q5A A; 4U86 A; 2YSB A; 2DMV A; 4U84 A; 5E66 A; 2E45 A; 3KAD A; 2WAD A; 1PIN A; 2ZQS A; 2YSG A; 4GLX A; 2KXQ A; 2XP7 A; 3KAF A; 2F21 A; 2DK7 A; 2XP3 A; 2MDI A; 2XP9 A; 2XP6 A; 1O6W A; 3MCB B; 2DWV A; 2JXW A; 2XP8 A; 2DJY A; 4E5R A; 3KAG A; 3ODK A; 3MQG A; 5E65 A; 2ITK A; 3PQH A; 2OWO A; 1ZCN A; 1K9Q A; 2DK1 A; 1JMQ A; 1K9R A; 2ZQT A; 2ZAJ A; 1I5H W; 3M85 A; 1EG4 A; 2YSI A; 2JMF A; 1TK7 A; 4REX A; 1WR7 A; 5E64 A; 3LKX B; 1NMV A; 3MQH A; 5E5W A; 3NTP A; 2BA1 A; 3FSC A; 3FSB A; 2M3O W; 3CNG A; 2YSH A; 3TC5 A; 1TR8 A; 2L4J A; 1WMV A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
