3MCBB

Crystal structure of nac domains of human nascent polypeptide-associated complex (nac)
Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
58
structure length
58
Chain Sequence
VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (55-56)Updating...
connected with : NaN
molecule tags Chaperone
source organism Homo sapiens
publication title Crystal structures of NAC domains of human nascent polypeptide-associated complex (NAC) and its alphaNAC subunit
pubmed doi rcsb
molecule keywords Nascent polypeptide-associated complex subunit alpha
total genus 11
structure length 58
sequence length 58
ec nomenclature
pdb deposition date 2010-03-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.30 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 3mcbB00
1TR8A 3MCBB 3LKXA 3MCBA 3LKXB
chains in the Genus database with same CATH superfamily
2DK1A 4A0TA 3FS8A 2JV4A 4GLXA 1JMQA 1TR8A 3KAGA 5E5WA 3KAIA 2XPAA 2LAJA 3KAHA 1ZCNA 2XP9A 2M3OW 2ZQSA 5U47A 5AHTA 2DK7A 1WMVA 3TC5A 2ZQUA 2ZR4A 3FSCA 3KABA 2WAEA 2XP7A 3M85A 2YSFA 1F8AB 1RP5A 5E66A 2ZAJA 2DWVA 3LKXA 3KCEA 2M8IA 2XP6A 1TK7A 5E64A 2M8JA 1YW5A 2XP5A 3PQHA 4U86A 1O6WA 3MQGA 2F21A 2L4JA 3WH0A 1I5HW 3NTPA 4E5RA 2DJYA 2YAJB 5E62A 2WADA 2ZR5A 2MDIA 4U84A 1EG4A 2KXQA 2JMFA 1EG3A 2BA1A 3L4HA 2Y8NB 2XP8A 3KADA 2ZR6A 5CQ2A 1WR7A 2JX8A 1K9QA 2ZQVA 1PINA 2E45A 4A0UA 3MCBA 2OWOA 2DMVA 3LKXB 4REXA 3M7NA 2XP3A 2EZ5W 3CNGA 3ODKA 4QIBA 3TDBA 2JXWA 2Q5AA 3MQHA 3TCZA 2YSHA 2XPBA 4U85A 3MCBB 2ITKA 2YSBA 3OOBA 1FLCA 2QRVA 3LE4A 2YSIA 3FSBA 3KAFA 2RE3A 5E65A 2XP4A 2ZQTA 1NMVA 1K9RA 2YSGA
chains in the Genus database with same CATH topology
2DK1A 4A0TA 3FS8A 2JV4A 4GLXA 1JMQA 1TR8A 3KAGA 5E5WA 3KAIA 2XPAA 2LAJA 3KAHA 1ZCNA 2XP9A 2M3OW 2ZQSA 5U47A 5AHTA 2DK7A 1WMVA 3TC5A 2ZQUA 2ZR4A 3FSCA 3KABA 2WAEA 2XP7A 3M85A 2YSFA 1F8AB 1RP5A 5E66A 2ZAJA 2DWVA 3LKXA 3KCEA 2M8IA 2XP6A 1TK7A 5E64A 2M8JA 1YW5A 2XP5A 3PQHA 4U86A 1O6WA 3MQGA 2F21A 2L4JA 3WH0A 1I5HW 3NTPA 4E5RA 2DJYA 2YAJB 5E62A 2WADA 2ZR5A 2MDIA 4U84A 1EG4A 2KXQA 2JMFA 1EG3A 2BA1A 3L4HA 2Y8NB 2XP8A 3KADA 2ZR6A 5CQ2A 1WR7A 2JX8A 1K9QA 2ZQVA 1PINA 2E45A 4A0UA 3MCBA 2OWOA 2DMVA 3LKXB 4REXA 3M7NA 2XP3A 2EZ5W 3CNGA 3ODKA 4QIBA 3TDBA 2JXWA 2Q5AA 3MQHA 3TCZA 2YSHA 2XPBA 4U85A 3MCBB 2ITKA 2YSBA 3OOBA 1FLCA 2QRVA 3LE4A 2YSIA 3FSBA 3KAFA 2RE3A 5E65A 2XP4A 2ZQTA 1NMVA 1K9RA 2YSGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TR8 A;  3MCB B;  3LKX A;  3MCB A;  3LKX B; 
#chains in the Genus database with same CATH topology
 2DK1 A;  4A0T A;  3FS8 A;  2JV4 A;  4GLX A;  1JMQ A;  1TR8 A;  3KAG A;  5E5W A;  3KAI A;  2XPA A;  2LAJ A;  3KAH A;  1ZCN A;  2XP9 A;  2M3O W;  2ZQS A;  5U47 A;  5AHT A;  2DK7 A;  1WMV A;  3TC5 A;  2ZQU A;  2ZR4 A;  3FSC A;  3KAB A;  2WAE A;  2XP7 A;  3M85 A;  2YSF A;  1F8A B;  1RP5 A;  5E66 A;  2ZAJ A;  2DWV A;  3LKX A;  3KCE A;  2M8I A;  2XP6 A;  1TK7 A;  5E64 A;  2M8J A;  1YW5 A;  2XP5 A;  3PQH A;  4U86 A;  1O6W A;  3MQG A;  2F21 A;  2L4J A;  3WH0 A;  1I5H W;  3NTP A;  4E5R A;  2DJY A;  2YAJ B;  5E62 A;  2WAD A;  2ZR5 A;  2MDI A;  4U84 A;  1EG4 A;  2KXQ A;  2JMF A;  1EG3 A;  2BA1 A;  3L4H A;  2Y8N B;  2XP8 A;  3KAD A;  2ZR6 A;  5CQ2 A;  1WR7 A;  2JX8 A;  1K9Q A;  2ZQV A;  1PIN A;  2E45 A;  4A0U A;  3MCB A;  2OWO A;  2DMV A;  3LKX B;  4REX A;  3M7N A;  2XP3 A;  2EZ5 W;  3CNG A;  3ODK A;  4QIB A;  3TDB A;  2JXW A;  2Q5A A;  3MQH A;  3TCZ A;  2YSH A;  2XPB A;  4U85 A;  3MCB B;  2ITK A;  2YSB A;  3OOB A;  1FLC A;  2QRV A;  3LE4 A;  2YSI A;  3FSB A;  3KAF A;  2RE3 A;  5E65 A;  2XP4 A;  2ZQT A;  1NMV A;  1K9R A;  2YSG A; 
#chains in the Genus database with same CATH homology
 2DK1 A;  4A0T A;  3FS8 A;  2JV4 A;  4GLX A;  1JMQ A;  1TR8 A;  3KAG A;  5E5W A;  3KAI A;  2XPA A;  2LAJ A;  3KAH A;  1ZCN A;  2XP9 A;  2M3O W;  2ZQS A;  5U47 A;  5AHT A;  2DK7 A;  1WMV A;  3TC5 A;  2ZQU A;  2ZR4 A;  3FSC A;  3KAB A;  2WAE A;  2XP7 A;  3M85 A;  2YSF A;  1F8A B;  1RP5 A;  5E66 A;  2ZAJ A;  2DWV A;  3LKX A;  3KCE A;  2M8I A;  2XP6 A;  1TK7 A;  5E64 A;  2M8J A;  1YW5 A;  2XP5 A;  3PQH A;  4U86 A;  1O6W A;  3MQG A;  2F21 A;  2L4J A;  3WH0 A;  1I5H W;  3NTP A;  4E5R A;  2DJY A;  2YAJ B;  5E62 A;  2WAD A;  2ZR5 A;  2MDI A;  4U84 A;  1EG4 A;  2KXQ A;  2JMF A;  1EG3 A;  2BA1 A;  3L4H A;  2Y8N B;  2XP8 A;  3KAD A;  2ZR6 A;  5CQ2 A;  1WR7 A;  2JX8 A;  1K9Q A;  2ZQV A;  1PIN A;  2E45 A;  4A0U A;  3MCB A;  2OWO A;  2DMV A;  3LKX B;  4REX A;  3M7N A;  2XP3 A;  2EZ5 W;  3CNG A;  3ODK A;  4QIB A;  3TDB A;  2JXW A;  2Q5A A;  3MQH A;  3TCZ A;  2YSH A;  2XPB A;  4U85 A;  3MCB B;  2ITK A;  2YSB A;  3OOB A;  1FLC A;  2QRV A;  3LE4 A;  2YSI A;  3FSB A;  3KAF A;  2RE3 A;  5E65 A;  2XP4 A;  2ZQT A;  1NMV A;  1K9R A;  2YSG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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