4IQJM

Structure of poliiialpha-tauc-dna complex suggests an atomic model of the replisome
Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
177
structure length
138
Chain Sequence
HHHHHHKAGEAQDLAEGWRAFLEALKPTLRAFVREARPHLEGKTLVLRFPESKAFHHLLPLARAQFGVEELAFVLEKKSLSLEDPPWEAEEGEDPSEELRRLARLLGGRLLWVRKPKAPEAEEPVSEDGIGGNGIMPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of PolIIIalpha-Tauc-DNA complex suggests an atomic model of the replisome
pubmed doi rcsb
molecule tags Transferase/dna
source organism Thermus aquaticus
molecule keywords DNA (5'-D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*
total genus 13
structure length 138
sequence length 177
chains with identical sequence N, O, P
ec nomenclature
pdb deposition date 2013-01-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.100 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Ribonucleotide Reductase Protein R1; domain 1 4iqjM02
4IQJM
chains in the Genus database with same CATH superfamily
1I0AA 2QGAB 1DOFA 1C3UA 1Z4KA 1FUPA 2D28C 1Q5NA 2FUSA 1TJUA 3RRPA 4APBA 1U15A 2X75A 1Z4PX 1U0LA 5HW2A 1K7WA 1U16A 1YFMA 3BHGA 2JARA 1K62A 4L57A 2JAUA 2PFMA 3RD8A 1IW7D 3GZHA 4EFCA 2PTSA 2PTQA 4NLEA 1FUOA 1DCNA 4E88A 2I7DA 3E04A 1YFEA 3R6QA 4APAA 4ADLA 4MX2A 1RE5A 3TV2A 1KQ7A 1Z4IA 3NO9A 1JSWA 2RCNA 2E9FA 3OCEA 4IQJM 1TJWA 1HY0A 1XWOA 3QBPA 1C3CA 1TJVA 4L6CA 1J3UA 1Z4QA 2YV5A 3R6VA 3CI0K 5F91A 2PTRA 3OCFA 4YIHA 3U13A 1Q92A 1Z4JA 1VDKA 4L6AA 5D6BA 3F4TA 1TJ7A 4MWOA 3GTDA 3F4RA 1MH9A 1FURA 4MUMA 2HVGA 1AUWA 1Z4LA 1T9HA 1FUQA 4ADMA 3C8TA 3F4SA 1Q91A 4YIKA 4HGVA 3U19A 1Z4MA 4EEIA 2JAWA 4NSLA 2D27A 4NFLA 5F92A 2JAOA 3BWVA 1HY1A
chains in the Genus database with same CATH topology
3F4RA 3F4SA 2D27A 1IW7D 3F4TA 4IQJM 2D28C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IQJ M; 
#chains in the Genus database with same CATH topology
 1I0A A;  2QGA B;  1DOF A;  1C3U A;  1Z4K A;  1FUP A;  2D28 C;  1Q5N A;  2FUS A;  1TJU A;  3RRP A;  4APB A;  1U15 A;  2X75 A;  1Z4P X;  1U0L A;  5HW2 A;  1K7W A;  1U16 A;  1YFM A;  3BHG A;  2JAR A;  1K62 A;  4L57 A;  2JAU A;  2PFM A;  3RD8 A;  1IW7 D;  3GZH A;  4EFC A;  2PTS A;  2PTQ A;  4NLE A;  1FUO A;  1DCN A;  4E88 A;  2I7D A;  3E04 A;  1YFE A;  3R6Q A;  4APA A;  4ADL A;  4MX2 A;  1RE5 A;  3TV2 A;  1KQ7 A;  1Z4I A;  3NO9 A;  1JSW A;  2RCN A;  2E9F A;  3OCE A;  4IQJ M;  1TJW A;  1HY0 A;  1XWO A;  3QBP A;  1C3C A;  1TJV A;  4L6C A;  1J3U A;  1Z4Q A;  2YV5 A;  3R6V A;  3CI0 K;  5F91 A;  2PTR A;  3OCF A;  4YIH A;  3U13 A;  1Q92 A;  1Z4J A;  1VDK A;  4L6A A;  5D6B A;  3F4T A;  1TJ7 A;  4MWO A;  3GTD A;  3F4R A;  1MH9 A;  1FUR A;  4MUM A;  2HVG A;  1AUW A;  1Z4L A;  1T9H A;  1FUQ A;  4ADM A;  3C8T A;  3F4S A;  1Q91 A;  4YIK A;  4HGV A;  3U19 A;  1Z4M A;  4EEI A;  2JAW A;  4NSL A;  2D27 A;  4NFL A;  5F92 A;  2JAO A;  3BWV A;  1HY1 A; 
#chains in the Genus database with same CATH homology
 3F4R A;  3F4S A;  2D27 A;  1IW7 D;  3F4T A;  4IQJ M;  2D28 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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