4IQJM

Structure of poliiialpha-tauc-dna complex suggests an atomic model of the replisome
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
177
structure length
138
Chain Sequence
HHHHHHKAGEAQDLAEGWRAFLEALKPTLRAFVREARPHLEGKTLVLRFPESKAFHHLLPLARAQFGVEELAFVLEKKSLSLEDPPWEAEEGEDPSEELRRLARLLGGRLLWVRKPKAPEAEEPVSEDGIGGNGIMPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase/dna
source organism Thermus aquaticus
publication title Structure of PolIIIalpha-Tauc-DNA complex suggests an atomic model of the replisome
pubmed doi rcsb
molecule keywords DNA (5'-D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*
total genus 13
structure length 138
sequence length 177
chains with identical sequence N, O, P
ec nomenclature
pdb deposition date 2013-01-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.100 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Ribonucleotide Reductase Protein R1; domain 1 4iqjM02
4IQJM
chains in the Genus database with same CATH superfamily
1Z4LA 1DOFA 2JARA 1AUWA 2RCNA 3OCFA 4MUMA 1C3UA 3F4RA 1TJUA 3E04A 5F92A 1FUOA 5D6BA 4EFCA 2FUSA 1TJ7A 2I7DA 2JAOA 2PTRA 2PTSA 1Q91A 2D27A 3BWVA 1Z4IA 1XWOA 1U16A 3RD8A 4NSLA 1VDKA 4APAA 3F4TA 1K7WA 4HGVA 1Z4PX 1FURA 1C3CA 1K62A 1KQ7A 1Q92A 4L6CA 1FUQA 4NLEA 1YFEA 3GTDA 1T9HA 2D28C 2X75A 3C8TA 1Q5NA 2YV5A 1TJVA 4APBA 3BHGA 2PFMA 1Z4JA 3TV2A 1YFMA 1FUPA 4MWOA 1RE5A 3NO9A 3RRPA 1U15A 1Z4MA 1JSWA 3GZHA 3F4SA 4YIHA 3U13A 4NFLA 3R6VA 3QBPA 2JAWA 1I0AA 2E9FA 1U0LA 5HW2A 1Z4QA 4L6AA 1MH9A 3R6QA 4E88A 4YIKA 4L57A 1IW7D 2JAUA 2HVGA 1Z4KA 1TJWA 1DCNA 4ADLA 2QGAB 4ADMA 3CI0K 3U19A 3OCEA 1HY1A 2PTQA 1J3UA 1HY0A 4EEIA 5F91A 4IQJM 4MX2A
chains in the Genus database with same CATH topology
4IQJM 2D27A 1IW7D 3F4SA 3F4RA 3F4TA 2D28C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IQJ M; 
#chains in the Genus database with same CATH topology
 1Z4L A;  1DOF A;  2JAR A;  1AUW A;  2RCN A;  3OCF A;  4MUM A;  1C3U A;  3F4R A;  1TJU A;  3E04 A;  5F92 A;  1FUO A;  5D6B A;  4EFC A;  2FUS A;  1TJ7 A;  2I7D A;  2JAO A;  2PTR A;  2PTS A;  1Q91 A;  2D27 A;  3BWV A;  1Z4I A;  1XWO A;  1U16 A;  3RD8 A;  4NSL A;  1VDK A;  4APA A;  3F4T A;  1K7W A;  4HGV A;  1Z4P X;  1FUR A;  1C3C A;  1K62 A;  1KQ7 A;  1Q92 A;  4L6C A;  1FUQ A;  4NLE A;  1YFE A;  3GTD A;  1T9H A;  2D28 C;  2X75 A;  3C8T A;  1Q5N A;  2YV5 A;  1TJV A;  4APB A;  3BHG A;  2PFM A;  1Z4J A;  3TV2 A;  1YFM A;  1FUP A;  4MWO A;  1RE5 A;  3NO9 A;  3RRP A;  1U15 A;  1Z4M A;  1JSW A;  3GZH A;  3F4S A;  4YIH A;  3U13 A;  4NFL A;  3R6V A;  3QBP A;  2JAW A;  1I0A A;  2E9F A;  1U0L A;  5HW2 A;  1Z4Q A;  4L6A A;  1MH9 A;  3R6Q A;  4E88 A;  4YIK A;  4L57 A;  1IW7 D;  2JAU A;  2HVG A;  1Z4K A;  1TJW A;  1DCN A;  4ADL A;  2QGA B;  4ADM A;  3CI0 K;  3U19 A;  3OCE A;  1HY1 A;  2PTQ A;  1J3U A;  1HY0 A;  4EEI A;  5F91 A;  4IQJ M;  4MX2 A; 
#chains in the Genus database with same CATH homology
 4IQJ M;  2D27 A;  1IW7 D;  3F4S A;  3F4R A;  3F4T A;  2D28 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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