4IQJM

Structure of poliiialpha-tauc-dna complex suggests an atomic model of the replisome
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
177
structure length
138
Chain Sequence
HHHHHHKAGEAQDLAEGWRAFLEALKPTLRAFVREARPHLEGKTLVLRFPESKAFHHLLPLARAQFGVEELAFVLEKKSLSLEDPPWEAEEGEDPSEELRRLARLLGGRLLWVRKPKAPEAEEPVSEDGIGGNGIMPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords DNA (5'-D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*
publication title Structure of PolIIIalpha-Tauc-DNA complex suggests an atomic model of the replisome
pubmed doi rcsb
source organism Thermus aquaticus
molecule tags Transferase/dna
total genus 13
structure length 138
sequence length 177
chains with identical sequence N, O, P
ec nomenclature
pdb deposition date 2013-01-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.100 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Ribonucleotide Reductase Protein R1; domain 1 4iqjM02
4IQJM
chains in the Genus database with same CATH superfamily
2D28C 1VDKA 1Q91A 3GZHA 4L6AA 2FUSA 2E9FA 2JARA 5D6BA 3C8TA 2JAOA 3BHGA 1TJUA 5F91A 1T9HA 1YFEA 3E04A 3TV2A 1KQ7A 4YIHA 1Z4JA 4MX2A 3RD8A 2PTRA 1FUQA 2QGAB 3R6QA 5F92A 4NLEA 1C3UA 1TJVA 3NO9A 1Z4MA 1Z4QA 4EEIA 2PTQA 2PFMA 1K62A 3U19A 1XWOA 1YFMA 1C3CA 5HW2A 1Q92A 1U0LA 2RCNA 2I7DA 1K7WA 1Z4LA 1FUPA 4IQJM 1AUWA 1I0AA 1TJ7A 4ADLA 3OCFA 3F4RA 4YIKA 3R6VA 1JSWA 1J3UA 1RE5A 1Z4PX 4NFLA 2JAUA 1TJWA 4ADMA 1Q5NA 3OCEA 4MUMA 1HY0A 1FURA 4MWOA 3BWVA 3F4SA 3CI0K 4E88A 1DOFA 1Z4IA 1U15A 3GTDA 1HY1A 1DCNA 2YV5A 2HVGA 1MH9A 3F4TA 4HGVA 1U16A 4NSLA 2D27A 2PTSA 2X75A 3RRPA 4APAA 4L57A 4EFCA 1Z4KA 3U13A 4L6CA 4APBA 1FUOA 3QBPA 1IW7D 2JAWA
chains in the Genus database with same CATH topology
2D28C 3F4SA 3F4RA 2D27A 4IQJM 3F4TA 1IW7D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IQJ M; 
#chains in the Genus database with same CATH topology
 2D28 C;  1VDK A;  1Q91 A;  3GZH A;  4L6A A;  2FUS A;  2E9F A;  2JAR A;  5D6B A;  3C8T A;  2JAO A;  3BHG A;  1TJU A;  5F91 A;  1T9H A;  1YFE A;  3E04 A;  3TV2 A;  1KQ7 A;  4YIH A;  1Z4J A;  4MX2 A;  3RD8 A;  2PTR A;  1FUQ A;  2QGA B;  3R6Q A;  5F92 A;  4NLE A;  1C3U A;  1TJV A;  3NO9 A;  1Z4M A;  1Z4Q A;  4EEI A;  2PTQ A;  2PFM A;  1K62 A;  3U19 A;  1XWO A;  1YFM A;  1C3C A;  5HW2 A;  1Q92 A;  1U0L A;  2RCN A;  2I7D A;  1K7W A;  1Z4L A;  1FUP A;  4IQJ M;  1AUW A;  1I0A A;  1TJ7 A;  4ADL A;  3OCF A;  3F4R A;  4YIK A;  3R6V A;  1JSW A;  1J3U A;  1RE5 A;  1Z4P X;  4NFL A;  2JAU A;  1TJW A;  4ADM A;  1Q5N A;  3OCE A;  4MUM A;  1HY0 A;  1FUR A;  4MWO A;  3BWV A;  3F4S A;  3CI0 K;  4E88 A;  1DOF A;  1Z4I A;  1U15 A;  3GTD A;  1HY1 A;  1DCN A;  2YV5 A;  2HVG A;  1MH9 A;  3F4T A;  4HGV A;  1U16 A;  4NSL A;  2D27 A;  2PTS A;  2X75 A;  3RRP A;  4APA A;  4L57 A;  4EFC A;  1Z4K A;  3U13 A;  4L6C A;  4APB A;  1FUO A;  3QBP A;  1IW7 D;  2JAW A; 
#chains in the Genus database with same CATH homology
 2D28 C;  3F4S A;  3F4R A;  2D27 A;  4IQJ M;  3F4T A;  1IW7 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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