1U15A

Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm)
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
449
structure length
449
Chain Sequence
TDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKEQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Delta crystallin I
publication title A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Lyase
total genus 184
structure length 449
sequence length 449
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1u15A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1u15A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1u15A02
1HY1A 2O7FA 2X75A 2O6YA 4FFXA 5EYTA 1FUPA 5EYVA 1T6JA 4NSLA 4APAA 3UNVA 2PTSA 1DOFA 4NLEA 1K62A 3NZ4A 2O7DA 2PFMA 3GTDA 2QVEA 1YFEA 2O78A 3NO9A 5HW2A 3R6VA 1YISA 1EB4A 1TJWA 1YFMA 1FUOA 2PTQA 4V2QA 2HVGA 1B8FA 1I0AA 2PTRA 1T6PA 5F91A 1AUWA 1RE5A 3KDYA 3R6QA 2VD6A 1HY0A 4APBA 1DCNA 4EEIA 2RJSA 4ADMA 2RJRA 1K7WA 1GKMA 5F92A 4BAAA 4C6GA 1GK3A 4ADLA 1Q5NA 1XWOA 3TV2A 2O7BA 3OCFA 4FLCA 1FURA 1U15A 4BABA 1Y2MA 2NYNA 1VDKA 1GK2A 2NYFA 3CZOA 3RD8A 1JSWA 3OCEA 3QBPA 2O7EA 4HGVA 2J91A 1TJVA 5D6BA 2FUSA 3GZHA 3KDZA 3RRPA 3E04A 1FUQA 4C5RA 2E9FA 1KQ7A 2OHYA 1W27A 4C5UA 1C3UA 1TJ7A 3C8TA 4EFCA 2YIIA 1U16A 4C5SA 4CQ5A 3R6YA 4V2RA 1C3CA 2QGAB 1TJUA 1J3UA 1GKJA 3BHGA 4MX2A
chains in the Genus database with same CATH superfamily
1HY1A 2O7FA 2X75A 2O6YA 4FFXA 5EYTA 1FUPA 5EYVA 1U0LA 1T6JA 4NSLA 1Z4JA 1Z4LA 5M0JA 4APAA 3UNVA 2I7DA 2PTSA 2FENA 4L6AA 3CRW1 1DOFA 4NLEA 1K62A 3U13A 3NZ4A 2O7DA 4MWOA 3U19A 2PFMA 4MX2A 3GTDA 2QVEA 1YFEA 2O78A 3F4SA 5HW2A 4L57A 3R6VA 1YISA 1EB4A 1TJWA 1YFMA 5M0IA 1FUOA 1Z4MA 1XMDA 2VSFA 2PTQA 4V2QA 4WNLA 2HVGA 1B8FA 1XL8A 1I0AA 2PTRA 1T6PA 2JARA 1T9HA 1XLYA 4NFLA 5F91A 1AUWA 1RE5A 3KDYA 3R6QA 2VD6A 1HY0A 1Z4QA 4APBA 4E88A 1DCNA 4EEIA 2RJSA 2FELA 4ADMA 2RJRA 1K7WA 2RCNA 1GKMA 5F92A 4BAAA 4C6GA 1GK3A 4ADLA 1Q5NA 1XWOA 3TV2A 4L6CA 2O7BA 2VL7A 2D28C 3OCFA 4FLCA 1FURA 1Z4KA 3BWVA 1U15A 4BABA 3F4TA 1Y2MA 2NYNA 1Q92A 1VDKA 1GK2A 2NYFA 3CZOA 3RD8A 1JSWA 4MUMA 3F4RA 3OCEA 4IQJM 3QBPA 1IW7D 2O7EA 4HGVA 2J91A 1Z4PX 1XMCA 4YIHA 1TJVA 3CRVA 5D6BA 2FUSA 3GZHA 3KDZA 3RRPA 3E04A 5H8WA 1FUQA 1MH9A 4C5RA 2JAOA 4A15A 2D27A 2JAUA 2E9FA 3CI0K 1KQ7A 2JAWA 1Q91A 2OHYA 1W27A 4C5UA 1C3UA 1TJ7A 4YIKA 3C8TA 4EFCA 2YIIA 1XL7A 1Z4IA 1U16A 4C5SA 4CQ5A 3R6YA 4V2RA 2YV5A 1C3CA 2QGAB 1TJUA 1J3UA 1GKJA 3BHGA 3NO9A
chains in the Genus database with same CATH topology
1HY1A 2O7FA 2X75A 2O6YA 4FFXA 5EYTA 1FUPA 5EYVA 1T6JA 4NSLA 4APAA 3UNVA 2PTSA 1DOFA 4NLEA 1K62A 3NZ4A 2O7DA 2PFMA 3GTDA 2QVEA 1YFEA 2O78A 3NO9A 5HW2A 3R6VA 1YISA 1EB4A 1TJWA 1YFMA 1FUOA 2PTQA 4V2QA 2HVGA 1B8FA 1I0AA 2PTRA 1T6PA 5F91A 1AUWA 1RE5A 3KDYA 3R6QA 2VD6A 1HY0A 4APBA 1DCNA 4EEIA 2RJSA 4ADMA 2RJRA 1K7WA 1GKMA 5F92A 4BAAA 4C6GA 1GK3A 4ADLA 1Q5NA 1XWOA 3TV2A 2O7BA 3OCFA 4FLCA 1FURA 1U15A 4BABA 1Y2MA 2NYNA 1VDKA 1GK2A 2NYFA 3CZOA 3RD8A 1JSWA 3OCEA 3QBPA 2O7EA 4HGVA 2J91A 1TJVA 5D6BA 2FUSA 3GZHA 3KDZA 3RRPA 3E04A 1FUQA 4C5RA 2E9FA 1KQ7A 2OHYA 1W27A 4C5UA 1C3UA 1TJ7A 3C8TA 4EFCA 2YIIA 1U16A 4C5SA 4CQ5A 3R6YA 4V2RA 1C3CA 2QGAB 1TJUA 1J3UA 1GKJA 3BHGA 4MX2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HY1 A;  2O7F A;  2X75 A;  2O6Y A;  4FFX A;  5EYT A;  1FUP A;  5EYV A;  1T6J A;  4NSL A;  4APA A;  3UNV A;  2PTS A;  1DOF A;  4NLE A;  1K62 A;  3NZ4 A;  2O7D A;  2PFM A;  3GTD A;  2QVE A;  1YFE A;  2O78 A;  3NO9 A;  5HW2 A;  3R6V A;  1YIS A;  1EB4 A;  1TJW A;  1YFM A;  1FUO A;  2PTQ A;  4V2Q A;  2HVG A;  1B8F A;  1I0A A;  2PTR A;  1T6P A;  5F91 A;  1AUW A;  1RE5 A;  3KDY A;  3R6Q A;  2VD6 A;  1HY0 A;  4APB A;  1DCN A;  4EEI A;  2RJS A;  4ADM A;  2RJR A;  1K7W A;  1GKM A;  5F92 A;  4BAA A;  4C6G A;  1GK3 A;  4ADL A;  1Q5N A;  1XWO A;  3TV2 A;  2O7B A;  3OCF A;  4FLC A;  1FUR A;  1U15 A;  4BAB A;  1Y2M A;  2NYN A;  1VDK A;  1GK2 A;  2NYF A;  3CZO A;  3RD8 A;  1JSW A;  3OCE A;  3QBP A;  2O7E A;  4HGV A;  2J91 A;  1TJV A;  5D6B A;  2FUS A;  3GZH A;  3KDZ A;  3RRP A;  3E04 A;  1FUQ A;  4C5R A;  2E9F A;  1KQ7 A;  2OHY A;  1W27 A;  4C5U A;  1C3U A;  1TJ7 A;  3C8T A;  4EFC A;  2YII A;  1U16 A;  4C5S A;  4CQ5 A;  3R6Y A;  4V2R A;  1C3C A;  2QGA B;  1TJU A;  1J3U A;  1GKJ A;  3BHG A;  4MX2 A; 
#chains in the Genus database with same CATH topology
 1HY1 A;  2O7F A;  2X75 A;  2O6Y A;  4FFX A;  5EYT A;  1FUP A;  5EYV A;  1U0L A;  1T6J A;  4NSL A;  1Z4J A;  1Z4L A;  5M0J A;  4APA A;  3UNV A;  2I7D A;  2PTS A;  2FEN A;  4L6A A;  3CRW 1;  1DOF A;  4NLE A;  1K62 A;  3U13 A;  3NZ4 A;  2O7D A;  4MWO A;  3U19 A;  2PFM A;  4MX2 A;  3GTD A;  2QVE A;  1YFE A;  2O78 A;  3F4S A;  5HW2 A;  4L57 A;  3R6V A;  1YIS A;  1EB4 A;  1TJW A;  1YFM A;  5M0I A;  1FUO A;  1Z4M A;  1XMD A;  2VSF A;  2PTQ A;  4V2Q A;  4WNL A;  2HVG A;  1B8F A;  1XL8 A;  1I0A A;  2PTR A;  1T6P A;  2JAR A;  1T9H A;  1XLY A;  4NFL A;  5F91 A;  1AUW A;  1RE5 A;  3KDY A;  3R6Q A;  2VD6 A;  1HY0 A;  1Z4Q A;  4APB A;  4E88 A;  1DCN A;  4EEI A;  2RJS A;  2FEL A;  4ADM A;  2RJR A;  1K7W A;  2RCN A;  1GKM A;  5F92 A;  4BAA A;  4C6G A;  1GK3 A;  4ADL A;  1Q5N A;  1XWO A;  3TV2 A;  4L6C A;  2O7B A;  2VL7 A;  2D28 C;  3OCF A;  4FLC A;  1FUR A;  1Z4K A;  3BWV A;  1U15 A;  4BAB A;  3F4T A;  1Y2M A;  2NYN A;  1Q92 A;  1VDK A;  1GK2 A;  2NYF A;  3CZO A;  3RD8 A;  1JSW A;  4MUM A;  3F4R A;  3OCE A;  4IQJ M;  3QBP A;  1IW7 D;  2O7E A;  4HGV A;  2J91 A;  1Z4P X;  1XMC A;  4YIH A;  1TJV A;  3CRV A;  5D6B A;  2FUS A;  3GZH A;  3KDZ A;  3RRP A;  3E04 A;  5H8W A;  1FUQ A;  1MH9 A;  4C5R A;  2JAO A;  4A15 A;  2D27 A;  2JAU A;  2E9F A;  3CI0 K;  1KQ7 A;  2JAW A;  1Q91 A;  2OHY A;  1W27 A;  4C5U A;  1C3U A;  1TJ7 A;  4YIK A;  3C8T A;  4EFC A;  2YII A;  1XL7 A;  1Z4I A;  1U16 A;  4C5S A;  4CQ5 A;  3R6Y A;  4V2R A;  2YV5 A;  1C3C A;  2QGA B;  1TJU A;  1J3U A;  1GKJ A;  3BHG A;  3NO9 A; 
#chains in the Genus database with same CATH homology
 1HY1 A;  2O7F A;  2X75 A;  2O6Y A;  4FFX A;  5EYT A;  1FUP A;  5EYV A;  1T6J A;  4NSL A;  4APA A;  3UNV A;  2PTS A;  1DOF A;  4NLE A;  1K62 A;  3NZ4 A;  2O7D A;  2PFM A;  3GTD A;  2QVE A;  1YFE A;  2O78 A;  3NO9 A;  5HW2 A;  3R6V A;  1YIS A;  1EB4 A;  1TJW A;  1YFM A;  1FUO A;  2PTQ A;  4V2Q A;  2HVG A;  1B8F A;  1I0A A;  2PTR A;  1T6P A;  5F91 A;  1AUW A;  1RE5 A;  3KDY A;  3R6Q A;  2VD6 A;  1HY0 A;  4APB A;  1DCN A;  4EEI A;  2RJS A;  4ADM A;  2RJR A;  1K7W A;  1GKM A;  5F92 A;  4BAA A;  4C6G A;  1GK3 A;  4ADL A;  1Q5N A;  1XWO A;  3TV2 A;  2O7B A;  3OCF A;  4FLC A;  1FUR A;  1U15 A;  4BAB A;  1Y2M A;  2NYN A;  1VDK A;  1GK2 A;  2NYF A;  3CZO A;  3RD8 A;  1JSW A;  3OCE A;  3QBP A;  2O7E A;  4HGV A;  2J91 A;  1TJV A;  5D6B A;  2FUS A;  3GZH A;  3KDZ A;  3RRP A;  3E04 A;  1FUQ A;  4C5R A;  2E9F A;  1KQ7 A;  2OHY A;  1W27 A;  4C5U A;  1C3U A;  1TJ7 A;  3C8T A;  4EFC A;  2YII A;  1U16 A;  4C5S A;  4CQ5 A;  3R6Y A;  4V2R A;  1C3C A;  2QGA B;  1TJU A;  1J3U A;  1GKJ A;  3BHG A;  4MX2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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