1U15A

Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm)
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
449
structure length
449
Chain Sequence
b'TDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKEQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Delta crystallin I
publication title A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Lyase
total genus 184
structure length 449
sequence length 449
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1u15A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1u15A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1u15A02
3BHGA 1HY1A 3E04A 1W27A 2RJSA 2O7FA 2E9FA 4APAA 2O7DA 4NSLA 2PTRA 1DCNA 5F92A 2PFMA 2VD6A 4V2QA 1EB4A 3RD8A 1YFEA 3QBPA 4BABA 1HY0A 4BAAA 2HVGA 1GKMA 3KDZA 5EYTA 4EFCA 1KQ7A 4C5UA 3GTDA 1C3UA 2O7EA 1B8FA 1U16A 1XWOA 4C5SA 1TJUA 1T6JA 3CZOA 2QVEA 2PTSA 1YFMA 1VDKA 3NZ4A 1GK3A 2J91A 2O78A 1TJWA 1C3CA 3KDYA 3NO9A 4C6GA 2QGAB 3R6VA 2NYFA 3TV2A 1GKJA 2RJRA 4MX2A 1YISA 1JSWA 4C5RA 1TJ7A 2OHYA 4FLCA 1FUPA 1RE5A 4NLEA 1DOFA 3GZHA 3R6YA 3UNVA 5HW2A 2X75A 3C8TA 2FUSA 3OCFA 1AUWA 4FFXA 1I0AA 2YIIA 2NYNA 5EYVA 1J3UA 1TJVA 1FUOA 4ADMA 1K7WA 4EEIA 1FURA 1Y2MA 3RRPA 2PTQA 1Q5NA 4ADLA 1T6PA 3R6QA 1K62A 2O6YA 5F91A 2O7BA 3OCEA 4HGVA 1GK2A 4V2RA 1U15A 5D6BA 4APBA 4CQ5A 1FUQA
chains in the Genus database with same CATH superfamily
3BHGA 1HY1A 3E04A 1W27A 2RJSA 2YV5A 3U13A 2O7FA 2E9FA 4APAA 2O7DA 4NSLA 3U19A 2PTRA 1DCNA 5F92A 2RCNA 2PFMA 2VD6A 4V2QA 1EB4A 3RD8A 1XL7A 1XL8A 1YFEA 3QBPA 4YIKA 4BABA 1HY0A 4BAAA 2HVGA 1GKMA 3KDZA 5EYTA 4EFCA 1KQ7A 4C5UA 1Q91A 3GTDA 1C3UA 2O7EA 1B8FA 1Z4JA 1U16A 1XWOA 3BWVA 4C5SA 1TJUA 1T9HA 1T6JA 3CRW1 3CZOA 2QVEA 3CI0K 1Z4QA 4A15A 2PTSA 1YFMA 1VDKA 3NZ4A 1GK3A 2J91A 1Z4KA 2O78A 1TJWA 1C3CA 1IW7D 2JAOA 4E88A 3KDYA 3NO9A 4C6GA 2QGAB 2VSFA 4NFLA 3R6VA 2NYFA 5M0IA 1Z4MA 2JAWA 3TV2A 1GKJA 2RJRA 2D27A 4MX2A 1YISA 4WNLA 1JSWA 1Z4LA 4L6AA 3F4RA 1TJ7A 4C5RA 2OHYA 1XMDA 4FLCA 1FUPA 1RE5A 4NLEA 2JAUA 1DOFA 3GZHA 3R6YA 3UNVA 5HW2A 2X75A 3C8TA 2FUSA 5M0JA 3OCFA 1AUWA 4FFXA 3F4TA 4L57A 4IQJM 1I0AA 2YIIA 2NYNA 5EYVA 1U0LA 1J3UA 4MUMA 1TJVA 2JARA 2FENA 1Z4IA 5H8WA 1FUOA 4ADMA 4MWOA 1K7WA 4EEIA 1FURA 1Y2MA 2D28C 3RRPA 3CRVA 2PTQA 1MH9A 1Q5NA 4ADLA 1T6PA 2FELA 3R6QA 2VL7A 1K62A 2O6YA 1Q92A 5F91A 2O7BA 4YIHA 3OCEA 4HGVA 1GK2A 4V2RA 1U15A 5D6BA 4APBA 3F4SA 4CQ5A 1XLYA 2I7DA 1Z4PX 1FUQA 4L6CA 1XMCA
chains in the Genus database with same CATH topology
3BHGA 1HY1A 3E04A 1W27A 2RJSA 2O7FA 2E9FA 4APAA 2O7DA 4NSLA 2PTRA 1DCNA 5F92A 2PFMA 2VD6A 4V2QA 1EB4A 3RD8A 1YFEA 3QBPA 4BABA 1HY0A 4BAAA 2HVGA 1GKMA 3KDZA 5EYTA 4EFCA 1KQ7A 4C5UA 3GTDA 1C3UA 2O7EA 1B8FA 1U16A 1XWOA 4C5SA 1TJUA 1T6JA 3CZOA 2QVEA 2PTSA 1YFMA 1VDKA 3NZ4A 1GK3A 2J91A 2O78A 1TJWA 1C3CA 3KDYA 3NO9A 4C6GA 2QGAB 3R6VA 2NYFA 3TV2A 1GKJA 2RJRA 4MX2A 1YISA 1JSWA 4C5RA 1TJ7A 2OHYA 4FLCA 1FUPA 1RE5A 4NLEA 1DOFA 3GZHA 3R6YA 3UNVA 5HW2A 2X75A 3C8TA 2FUSA 3OCFA 1AUWA 4FFXA 1I0AA 2YIIA 2NYNA 5EYVA 1J3UA 1TJVA 1FUOA 4ADMA 1K7WA 4EEIA 1FURA 1Y2MA 3RRPA 2PTQA 1Q5NA 4ADLA 1T6PA 3R6QA 1K62A 2O6YA 5F91A 2O7BA 3OCEA 4HGVA 1GK2A 4V2RA 1U15A 5D6BA 4APBA 4CQ5A 1FUQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BHG A;  1HY1 A;  3E04 A;  1W27 A;  2RJS A;  2O7F A;  2E9F A;  4APA A;  2O7D A;  4NSL A;  2PTR A;  1DCN A;  5F92 A;  2PFM A;  2VD6 A;  4V2Q A;  1EB4 A;  3RD8 A;  1YFE A;  3QBP A;  4BAB A;  1HY0 A;  4BAA A;  2HVG A;  1GKM A;  3KDZ A;  5EYT A;  4EFC A;  1KQ7 A;  4C5U A;  3GTD A;  1C3U A;  2O7E A;  1B8F A;  1U16 A;  1XWO A;  4C5S A;  1TJU A;  1T6J A;  3CZO A;  2QVE A;  2PTS A;  1YFM A;  1VDK A;  3NZ4 A;  1GK3 A;  2J91 A;  2O78 A;  1TJW A;  1C3C A;  3KDY A;  3NO9 A;  4C6G A;  2QGA B;  3R6V A;  2NYF A;  3TV2 A;  1GKJ A;  2RJR A;  4MX2 A;  1YIS A;  1JSW A;  4C5R A;  1TJ7 A;  2OHY A;  4FLC A;  1FUP A;  1RE5 A;  4NLE A;  1DOF A;  3GZH A;  3R6Y A;  3UNV A;  5HW2 A;  2X75 A;  3C8T A;  2FUS A;  3OCF A;  1AUW A;  4FFX A;  1I0A A;  2YII A;  2NYN A;  5EYV A;  1J3U A;  1TJV A;  1FUO A;  4ADM A;  1K7W A;  4EEI A;  1FUR A;  1Y2M A;  3RRP A;  2PTQ A;  1Q5N A;  4ADL A;  1T6P A;  3R6Q A;  1K62 A;  2O6Y A;  5F91 A;  2O7B A;  3OCE A;  4HGV A;  1GK2 A;  4V2R A;  1U15 A;  5D6B A;  4APB A;  4CQ5 A;  1FUQ A; 
#chains in the Genus database with same CATH topology
 3BHG A;  1HY1 A;  3E04 A;  1W27 A;  2RJS A;  2YV5 A;  3U13 A;  2O7F A;  2E9F A;  4APA A;  2O7D A;  4NSL A;  3U19 A;  2PTR A;  1DCN A;  5F92 A;  2RCN A;  2PFM A;  2VD6 A;  4V2Q A;  1EB4 A;  3RD8 A;  1XL7 A;  1XL8 A;  1YFE A;  3QBP A;  4YIK A;  4BAB A;  1HY0 A;  4BAA A;  2HVG A;  1GKM A;  3KDZ A;  5EYT A;  4EFC A;  1KQ7 A;  4C5U A;  1Q91 A;  3GTD A;  1C3U A;  2O7E A;  1B8F A;  1Z4J A;  1U16 A;  1XWO A;  3BWV A;  4C5S A;  1TJU A;  1T9H A;  1T6J A;  3CRW 1;  3CZO A;  2QVE A;  3CI0 K;  1Z4Q A;  4A15 A;  2PTS A;  1YFM A;  1VDK A;  3NZ4 A;  1GK3 A;  2J91 A;  1Z4K A;  2O78 A;  1TJW A;  1C3C A;  1IW7 D;  2JAO A;  4E88 A;  3KDY A;  3NO9 A;  4C6G A;  2QGA B;  2VSF A;  4NFL A;  3R6V A;  2NYF A;  5M0I A;  1Z4M A;  2JAW A;  3TV2 A;  1GKJ A;  2RJR A;  2D27 A;  4MX2 A;  1YIS A;  4WNL A;  1JSW A;  1Z4L A;  4L6A A;  3F4R A;  1TJ7 A;  4C5R A;  2OHY A;  1XMD A;  4FLC A;  1FUP A;  1RE5 A;  4NLE A;  2JAU A;  1DOF A;  3GZH A;  3R6Y A;  3UNV A;  5HW2 A;  2X75 A;  3C8T A;  2FUS A;  5M0J A;  3OCF A;  1AUW A;  4FFX A;  3F4T A;  4L57 A;  4IQJ M;  1I0A A;  2YII A;  2NYN A;  5EYV A;  1U0L A;  1J3U A;  4MUM A;  1TJV A;  2JAR A;  2FEN A;  1Z4I A;  5H8W A;  1FUO A;  4ADM A;  4MWO A;  1K7W A;  4EEI A;  1FUR A;  1Y2M A;  2D28 C;  3RRP A;  3CRV A;  2PTQ A;  1MH9 A;  1Q5N A;  4ADL A;  1T6P A;  2FEL A;  3R6Q A;  2VL7 A;  1K62 A;  2O6Y A;  1Q92 A;  5F91 A;  2O7B A;  4YIH A;  3OCE A;  4HGV A;  1GK2 A;  4V2R A;  1U15 A;  5D6B A;  4APB A;  3F4S A;  4CQ5 A;  1XLY A;  2I7D A;  1Z4P X;  1FUQ A;  4L6C A;  1XMC A; 
#chains in the Genus database with same CATH homology
 3BHG A;  1HY1 A;  3E04 A;  1W27 A;  2RJS A;  2O7F A;  2E9F A;  4APA A;  2O7D A;  4NSL A;  2PTR A;  1DCN A;  5F92 A;  2PFM A;  2VD6 A;  4V2Q A;  1EB4 A;  3RD8 A;  1YFE A;  3QBP A;  4BAB A;  1HY0 A;  4BAA A;  2HVG A;  1GKM A;  3KDZ A;  5EYT A;  4EFC A;  1KQ7 A;  4C5U A;  3GTD A;  1C3U A;  2O7E A;  1B8F A;  1U16 A;  1XWO A;  4C5S A;  1TJU A;  1T6J A;  3CZO A;  2QVE A;  2PTS A;  1YFM A;  1VDK A;  3NZ4 A;  1GK3 A;  2J91 A;  2O78 A;  1TJW A;  1C3C A;  3KDY A;  3NO9 A;  4C6G A;  2QGA B;  3R6V A;  2NYF A;  3TV2 A;  1GKJ A;  2RJR A;  4MX2 A;  1YIS A;  1JSW A;  4C5R A;  1TJ7 A;  2OHY A;  4FLC A;  1FUP A;  1RE5 A;  4NLE A;  1DOF A;  3GZH A;  3R6Y A;  3UNV A;  5HW2 A;  2X75 A;  3C8T A;  2FUS A;  3OCF A;  1AUW A;  4FFX A;  1I0A A;  2YII A;  2NYN A;  5EYV A;  1J3U A;  1TJV A;  1FUO A;  4ADM A;  1K7W A;  4EEI A;  1FUR A;  1Y2M A;  3RRP A;  2PTQ A;  1Q5N A;  4ADL A;  1T6P A;  3R6Q A;  1K62 A;  2O6Y A;  5F91 A;  2O7B A;  3OCE A;  4HGV A;  1GK2 A;  4V2R A;  1U15 A;  5D6B A;  4APB A;  4CQ5 A;  1FUQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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