1U15A

Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm)
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
449
structure length
449
Chain Sequence
TDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKEQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Delta crystallin I
publication title A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
pubmed doi rcsb
source organism Anas platyrhynchos
total genus 184
structure length 449
sequence length 449
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1u15A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1u15A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1u15A02
4C5SA 4C5UA 3OCFA 5F91A 4NSLA 3R6YA 2O7DA 3E04A 2X75A 3TV2A 4APBA 1GKMA 2PTSA 1FUPA 2NYNA 2O7BA 1C3UA 4C5RA 2PTQA 5HW2A 5F92A 2QGAB 4FFXA 4HGVA 1HY0A 1TJVA 1FURA 3GTDA 1W27A 1U15A 4BAAA 2NYFA 1K7WA 1C3CA 1AUWA 2O6YA 1K62A 1GK2A 3KDYA 3R6QA 4EEIA 3RRPA 2VD6A 3RD8A 1I0AA 2PTRA 4ADMA 4V2QA 2O7FA 2FUSA 4BABA 5EYTA 4CQ5A 2QVEA 1FUOA 1KQ7A 1YFEA 3UNVA 3BHGA 3C8TA 2O7EA 1FUQA 1U16A 4FLCA 1B8FA 1EB4A 1Y2MA 2J91A 3CZOA 1Q5NA 2RJSA 1DCNA 2YIIA 1JSWA 3NO9A 4MX2A 1YFMA 4APAA 1RE5A 3NZ4A 1XWOA 1HY1A 1T6JA 3QBPA 2O78A 2RJRA 1GKJA 4NLEA 1J3UA 3OCEA 1TJUA 4EFCA 1GK3A 1T6PA 2OHYA 3R6VA 1VDKA 4ADLA 2PFMA 1TJ7A 3KDZA 2E9FA 1TJWA 4V2RA 5D6BA 1YISA 1DOFA 2HVGA 3GZHA 4C6GA 5EYVA
chains in the Genus database with same CATH superfamily
4C5SA 4L57A 4C5UA 3F4RA 1IW7D 3OCFA 1Z4PX 5F91A 4NSLA 3R6YA 1Q91A 1XMCA 2O7DA 4L6CA 3E04A 2X75A 3TV2A 4APBA 1GKMA 4MUMA 2PTSA 1XL7A 1FUPA 2FELA 2NYNA 2O7BA 1Z4KA 1C3UA 2JAUA 4C5RA 2VSFA 2YV5A 2PTQA 5HW2A 5F92A 1XLYA 2QGAB 4FFXA 4HGVA 1HY0A 5M0IA 1TJVA 1FURA 3GTDA 1W27A 1T9HA 1U15A 4YIKA 4BAAA 2NYFA 1K7WA 3U19A 1C3CA 3BWVA 1AUWA 2O6YA 2I7DA 1K62A 3CI0K 1GK2A 3KDYA 3CRW1 3CRVA 2D27A 5M0JA 3R6QA 4EEIA 3RRPA 2FENA 2VD6A 1U0LA 3F4SA 3RD8A 1I0AA 2PTRA 4ADMA 4V2QA 2O7FA 2FUSA 4BABA 5EYTA 4CQ5A 2QVEA 1FUOA 1KQ7A 1XMDA 1YFEA 3UNVA 4E88A 3BHGA 3C8TA 4MWOA 1Z4LA 2O7EA 1FUQA 2JAWA 1U16A 4FLCA 1B8FA 1EB4A 1Y2MA 2JARA 2J91A 3CZOA 1Q5NA 1Z4IA 2RCNA 4L6AA 4YIHA 2RJSA 1DCNA 2YIIA 1JSWA 3NO9A 4MX2A 1YFMA 2VL7A 4APAA 1RE5A 3NZ4A 1XL8A 1XWOA 3U13A 1HY1A 1T6JA 3QBPA 2O78A 1Z4MA 2RJRA 1GKJA 1MH9A 2JAOA 4NLEA 3F4TA 4A15A 2D28C 1J3UA 3OCEA 1TJUA 1Q92A 4EFCA 1GK3A 1T6PA 2OHYA 4WNLA 3R6VA 1VDKA 4ADLA 2PFMA 1TJ7A 4IQJM 3KDZA 2E9FA 1TJWA 4V2RA 4NFLA 5H8WA 5D6BA 1Z4QA 1YISA 1DOFA 1Z4JA 2HVGA 3GZHA 4C6GA 5EYVA
chains in the Genus database with same CATH topology
4C5SA 4C5UA 3OCFA 5F91A 4NSLA 3R6YA 2O7DA 3E04A 2X75A 3TV2A 4APBA 1GKMA 2PTSA 1FUPA 2NYNA 2O7BA 1C3UA 4C5RA 2PTQA 5HW2A 5F92A 2QGAB 4FFXA 4HGVA 1HY0A 1TJVA 1FURA 3GTDA 1W27A 1U15A 4BAAA 2NYFA 1K7WA 1C3CA 1AUWA 2O6YA 1K62A 1GK2A 3KDYA 3R6QA 4EEIA 3RRPA 2VD6A 3RD8A 1I0AA 2PTRA 4ADMA 4V2QA 2O7FA 2FUSA 4BABA 5EYTA 4CQ5A 2QVEA 1FUOA 1KQ7A 1YFEA 3UNVA 3BHGA 3C8TA 2O7EA 1FUQA 1U16A 4FLCA 1B8FA 1EB4A 1Y2MA 2J91A 3CZOA 1Q5NA 2RJSA 1DCNA 2YIIA 1JSWA 3NO9A 4MX2A 1YFMA 4APAA 1RE5A 3NZ4A 1XWOA 1HY1A 1T6JA 3QBPA 2O78A 2RJRA 1GKJA 4NLEA 1J3UA 3OCEA 1TJUA 4EFCA 1GK3A 1T6PA 2OHYA 3R6VA 1VDKA 4ADLA 2PFMA 1TJ7A 3KDZA 2E9FA 1TJWA 4V2RA 5D6BA 1YISA 1DOFA 2HVGA 3GZHA 4C6GA 5EYVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C5S A;  4C5U A;  3OCF A;  5F91 A;  4NSL A;  3R6Y A;  2O7D A;  3E04 A;  2X75 A;  3TV2 A;  4APB A;  1GKM A;  2PTS A;  1FUP A;  2NYN A;  2O7B A;  1C3U A;  4C5R A;  2PTQ A;  5HW2 A;  5F92 A;  2QGA B;  4FFX A;  4HGV A;  1HY0 A;  1TJV A;  1FUR A;  3GTD A;  1W27 A;  1U15 A;  4BAA A;  2NYF A;  1K7W A;  1C3C A;  1AUW A;  2O6Y A;  1K62 A;  1GK2 A;  3KDY A;  3R6Q A;  4EEI A;  3RRP A;  2VD6 A;  3RD8 A;  1I0A A;  2PTR A;  4ADM A;  4V2Q A;  2O7F A;  2FUS A;  4BAB A;  5EYT A;  4CQ5 A;  2QVE A;  1FUO A;  1KQ7 A;  1YFE A;  3UNV A;  3BHG A;  3C8T A;  2O7E A;  1FUQ A;  1U16 A;  4FLC A;  1B8F A;  1EB4 A;  1Y2M A;  2J91 A;  3CZO A;  1Q5N A;  2RJS A;  1DCN A;  2YII A;  1JSW A;  3NO9 A;  4MX2 A;  1YFM A;  4APA A;  1RE5 A;  3NZ4 A;  1XWO A;  1HY1 A;  1T6J A;  3QBP A;  2O78 A;  2RJR A;  1GKJ A;  4NLE A;  1J3U A;  3OCE A;  1TJU A;  4EFC A;  1GK3 A;  1T6P A;  2OHY A;  3R6V A;  1VDK A;  4ADL A;  2PFM A;  1TJ7 A;  3KDZ A;  2E9F A;  1TJW A;  4V2R A;  5D6B A;  1YIS A;  1DOF A;  2HVG A;  3GZH A;  4C6G A;  5EYV A; 
#chains in the Genus database with same CATH topology
 4C5S A;  4L57 A;  4C5U A;  3F4R A;  1IW7 D;  3OCF A;  1Z4P X;  5F91 A;  4NSL A;  3R6Y A;  1Q91 A;  1XMC A;  2O7D A;  4L6C A;  3E04 A;  2X75 A;  3TV2 A;  4APB A;  1GKM A;  4MUM A;  2PTS A;  1XL7 A;  1FUP A;  2FEL A;  2NYN A;  2O7B A;  1Z4K A;  1C3U A;  2JAU A;  4C5R A;  2VSF A;  2YV5 A;  2PTQ A;  5HW2 A;  5F92 A;  1XLY A;  2QGA B;  4FFX A;  4HGV A;  1HY0 A;  5M0I A;  1TJV A;  1FUR A;  3GTD A;  1W27 A;  1T9H A;  1U15 A;  4YIK A;  4BAA A;  2NYF A;  1K7W A;  3U19 A;  1C3C A;  3BWV A;  1AUW A;  2O6Y A;  2I7D A;  1K62 A;  3CI0 K;  1GK2 A;  3KDY A;  3CRW 1;  3CRV A;  2D27 A;  5M0J A;  3R6Q A;  4EEI A;  3RRP A;  2FEN A;  2VD6 A;  1U0L A;  3F4S A;  3RD8 A;  1I0A A;  2PTR A;  4ADM A;  4V2Q A;  2O7F A;  2FUS A;  4BAB A;  5EYT A;  4CQ5 A;  2QVE A;  1FUO A;  1KQ7 A;  1XMD A;  1YFE A;  3UNV A;  4E88 A;  3BHG A;  3C8T A;  4MWO A;  1Z4L A;  2O7E A;  1FUQ A;  2JAW A;  1U16 A;  4FLC A;  1B8F A;  1EB4 A;  1Y2M A;  2JAR A;  2J91 A;  3CZO A;  1Q5N A;  1Z4I A;  2RCN A;  4L6A A;  4YIH A;  2RJS A;  1DCN A;  2YII A;  1JSW A;  3NO9 A;  4MX2 A;  1YFM A;  2VL7 A;  4APA A;  1RE5 A;  3NZ4 A;  1XL8 A;  1XWO A;  3U13 A;  1HY1 A;  1T6J A;  3QBP A;  2O78 A;  1Z4M A;  2RJR A;  1GKJ A;  1MH9 A;  2JAO A;  4NLE A;  3F4T A;  4A15 A;  2D28 C;  1J3U A;  3OCE A;  1TJU A;  1Q92 A;  4EFC A;  1GK3 A;  1T6P A;  2OHY A;  4WNL A;  3R6V A;  1VDK A;  4ADL A;  2PFM A;  1TJ7 A;  4IQJ M;  3KDZ A;  2E9F A;  1TJW A;  4V2R A;  4NFL A;  5H8W A;  5D6B A;  1Z4Q A;  1YIS A;  1DOF A;  1Z4J A;  2HVG A;  3GZH A;  4C6G A;  5EYV A; 
#chains in the Genus database with same CATH homology
 4C5S A;  4C5U A;  3OCF A;  5F91 A;  4NSL A;  3R6Y A;  2O7D A;  3E04 A;  2X75 A;  3TV2 A;  4APB A;  1GKM A;  2PTS A;  1FUP A;  2NYN A;  2O7B A;  1C3U A;  4C5R A;  2PTQ A;  5HW2 A;  5F92 A;  2QGA B;  4FFX A;  4HGV A;  1HY0 A;  1TJV A;  1FUR A;  3GTD A;  1W27 A;  1U15 A;  4BAA A;  2NYF A;  1K7W A;  1C3C A;  1AUW A;  2O6Y A;  1K62 A;  1GK2 A;  3KDY A;  3R6Q A;  4EEI A;  3RRP A;  2VD6 A;  3RD8 A;  1I0A A;  2PTR A;  4ADM A;  4V2Q A;  2O7F A;  2FUS A;  4BAB A;  5EYT A;  4CQ5 A;  2QVE A;  1FUO A;  1KQ7 A;  1YFE A;  3UNV A;  3BHG A;  3C8T A;  2O7E A;  1FUQ A;  1U16 A;  4FLC A;  1B8F A;  1EB4 A;  1Y2M A;  2J91 A;  3CZO A;  1Q5N A;  2RJS A;  1DCN A;  2YII A;  1JSW A;  3NO9 A;  4MX2 A;  1YFM A;  4APA A;  1RE5 A;  3NZ4 A;  1XWO A;  1HY1 A;  1T6J A;  3QBP A;  2O78 A;  2RJR A;  1GKJ A;  4NLE A;  1J3U A;  3OCE A;  1TJU A;  4EFC A;  1GK3 A;  1T6P A;  2OHY A;  3R6V A;  1VDK A;  4ADL A;  2PFM A;  1TJ7 A;  3KDZ A;  2E9F A;  1TJW A;  4V2R A;  5D6B A;  1YIS A;  1DOF A;  2HVG A;  3GZH A;  4C6G A;  5EYV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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