3OCEA

Crystal structure of fumarate lyase:delta crystallin from brucella melitensis bound to cobalt
Total Genus 187
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
461
structure length
461
Chain Sequence
MTRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGLDASALTIMLDPLRMAFPP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Fumarate lyase:Delta crystallin
publication title Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis bound to cobalt
rcsb
source organism Brucella melitensis
molecule tags Lyase
total genus 187
structure length 461
sequence length 461
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2010-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3oceA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3oceA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3oceA02
3RRPA 2RJSA 3GZHA 1FURA 2X75A 1HY0A 1I0AA 3QBPA 3NO9A 1W27A 1RE5A 1U15A 2NYNA 2QGAB 1Y2MA 3GTDA 4BAAA 4EEIA 1YISA 3OCFA 4C5SA 5EYVA 1B8FA 4NSLA 2PTQA 1FUOA 1TJWA 5EYTA 2PTSA 1YFEA 3UNVA 1C3CA 3NZ4A 5HW2A 2QVEA 2O6YA 1T6PA 3RD8A 2E9FA 1GKJA 3KDYA 1U16A 4FFXA 4EFCA 1XWOA 4HGVA 5F91A 2J91A 2O7EA 4C5UA 1EB4A 4APBA 2YIIA 3OCEA 1JSWA 2O78A 1AUWA 1GKMA 1K62A 2PFMA 1J3UA 3R6VA 1DCNA 2O7BA 1KQ7A 1GK3A 1TJ7A 1FUQA 2FUSA 2HVGA 2NYFA 3R6YA 4NLEA 1Q5NA 2O7FA 2PTRA 1TJVA 1FUPA 1TJUA 4BABA 1T6JA 4C5RA 1DOFA 5D6BA 1K7WA 1YFMA 4APAA 1HY1A 2O7DA 4CQ5A 3BHGA 3C8TA 4ADLA 4MX2A 1VDKA 3TV2A 2VD6A 4FLCA 4V2RA 5F92A 2OHYA 4C6GA 3KDZA 3R6QA 1GK2A 2RJRA 4V2QA 3E04A 1C3UA 4ADMA 3CZOA
chains in the Genus database with same CATH superfamily
3U19A 1Z4LA 3RRPA 2RJSA 1Z4IA 1Z4PX 1Z4MA 3GZHA 1FURA 2X75A 1HY0A 1I0AA 3QBPA 2JAOA 3NO9A 1W27A 1RE5A 1U15A 2NYNA 1Z4KA 2QGAB 1Q92A 1Y2MA 2RCNA 1T9HA 3GTDA 4BAAA 4EEIA 1YISA 1U0LA 3OCFA 4C5SA 1XMDA 2VL7A 5EYVA 1B8FA 4NSLA 5M0IA 1XLYA 2PTQA 1FUOA 1TJWA 5EYTA 3F4TA 2PTSA 3U13A 1YFEA 3UNVA 1C3CA 3NZ4A 5HW2A 2QVEA 2O6YA 1IW7D 3F4RA 1T6PA 4A15A 3RD8A 2E9FA 4L57A 4YIHA 1GKJA 4E88A 3KDYA 1U16A 1Z4QA 4MUMA 4FFXA 4EFCA 1XWOA 4HGVA 1XMCA 5F91A 2J91A 2O7EA 4C5UA 3CI0K 1EB4A 4APBA 2YIIA 3OCEA 1JSWA 1XL7A 2D28C 2O78A 1AUWA 1GKMA 1K62A 2PFMA 1J3UA 2YV5A 1Z4JA 3R6VA 1DCNA 2JARA 2O7BA 1KQ7A 3CRVA 4IQJM 1GK3A 2FENA 1TJ7A 1FUQA 2FUSA 2HVGA 4L6CA 2NYFA 2D27A 4NLEA 3R6YA 1Q5NA 1Q91A 2O7FA 2PTRA 1TJVA 2VSFA 1FUPA 2JAUA 4L6AA 1TJUA 4MWOA 1T6JA 4BABA 4C5RA 1DOFA 5D6BA 2I7DA 1K7WA 1YFMA 4APAA 1HY1A 2O7DA 4CQ5A 3BHGA 3C8TA 4YIKA 4MX2A 4ADLA 1MH9A 5M0JA 3CRW1 1VDKA 4NFLA 1XL8A 2JAWA 3TV2A 2VD6A 4FLCA 4V2RA 3BWVA 5F92A 2OHYA 4WNLA 4C6GA 3KDZA 3R6QA 1GK2A 2RJRA 4V2QA 2FELA 3F4SA 3E04A 5H8WA 1C3UA 4ADMA 3CZOA
chains in the Genus database with same CATH topology
3RRPA 2RJSA 3GZHA 1FURA 2X75A 1HY0A 1I0AA 3QBPA 3NO9A 1W27A 1RE5A 1U15A 2NYNA 2QGAB 1Y2MA 3GTDA 4BAAA 4EEIA 1YISA 3OCFA 4C5SA 5EYVA 1B8FA 4NSLA 2PTQA 1FUOA 1TJWA 5EYTA 2PTSA 1YFEA 3UNVA 1C3CA 3NZ4A 5HW2A 2QVEA 2O6YA 1T6PA 3RD8A 2E9FA 1GKJA 3KDYA 1U16A 4FFXA 4EFCA 1XWOA 4HGVA 5F91A 2J91A 2O7EA 4C5UA 1EB4A 4APBA 2YIIA 3OCEA 1JSWA 2O78A 1AUWA 1GKMA 1K62A 2PFMA 1J3UA 3R6VA 1DCNA 2O7BA 1KQ7A 1GK3A 1TJ7A 1FUQA 2FUSA 2HVGA 2NYFA 3R6YA 4NLEA 1Q5NA 2O7FA 2PTRA 1TJVA 1FUPA 1TJUA 4BABA 1T6JA 4C5RA 1DOFA 5D6BA 1K7WA 1YFMA 4APAA 1HY1A 2O7DA 4CQ5A 3BHGA 3C8TA 4ADLA 4MX2A 1VDKA 3TV2A 2VD6A 4FLCA 4V2RA 5F92A 2OHYA 4C6GA 3KDZA 3R6QA 1GK2A 2RJRA 4V2QA 3E04A 1C3UA 4ADMA 3CZOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RRP A;  2RJS A;  3GZH A;  1FUR A;  2X75 A;  1HY0 A;  1I0A A;  3QBP A;  3NO9 A;  1W27 A;  1RE5 A;  1U15 A;  2NYN A;  2QGA B;  1Y2M A;  3GTD A;  4BAA A;  4EEI A;  1YIS A;  3OCF A;  4C5S A;  5EYV A;  1B8F A;  4NSL A;  2PTQ A;  1FUO A;  1TJW A;  5EYT A;  2PTS A;  1YFE A;  3UNV A;  1C3C A;  3NZ4 A;  5HW2 A;  2QVE A;  2O6Y A;  1T6P A;  3RD8 A;  2E9F A;  1GKJ A;  3KDY A;  1U16 A;  4FFX A;  4EFC A;  1XWO A;  4HGV A;  5F91 A;  2J91 A;  2O7E A;  4C5U A;  1EB4 A;  4APB A;  2YII A;  3OCE A;  1JSW A;  2O78 A;  1AUW A;  1GKM A;  1K62 A;  2PFM A;  1J3U A;  3R6V A;  1DCN A;  2O7B A;  1KQ7 A;  1GK3 A;  1TJ7 A;  1FUQ A;  2FUS A;  2HVG A;  2NYF A;  3R6Y A;  4NLE A;  1Q5N A;  2O7F A;  2PTR A;  1TJV A;  1FUP A;  1TJU A;  4BAB A;  1T6J A;  4C5R A;  1DOF A;  5D6B A;  1K7W A;  1YFM A;  4APA A;  1HY1 A;  2O7D A;  4CQ5 A;  3BHG A;  3C8T A;  4ADL A;  4MX2 A;  1VDK A;  3TV2 A;  2VD6 A;  4FLC A;  4V2R A;  5F92 A;  2OHY A;  4C6G A;  3KDZ A;  3R6Q A;  1GK2 A;  2RJR A;  4V2Q A;  3E04 A;  1C3U A;  4ADM A;  3CZO A; 
#chains in the Genus database with same CATH topology
 3U19 A;  1Z4L A;  3RRP A;  2RJS A;  1Z4I A;  1Z4P X;  1Z4M A;  3GZH A;  1FUR A;  2X75 A;  1HY0 A;  1I0A A;  3QBP A;  2JAO A;  3NO9 A;  1W27 A;  1RE5 A;  1U15 A;  2NYN A;  1Z4K A;  2QGA B;  1Q92 A;  1Y2M A;  2RCN A;  1T9H A;  3GTD A;  4BAA A;  4EEI A;  1YIS A;  1U0L A;  3OCF A;  4C5S A;  1XMD A;  2VL7 A;  5EYV A;  1B8F A;  4NSL A;  5M0I A;  1XLY A;  2PTQ A;  1FUO A;  1TJW A;  5EYT A;  3F4T A;  2PTS A;  3U13 A;  1YFE A;  3UNV A;  1C3C A;  3NZ4 A;  5HW2 A;  2QVE A;  2O6Y A;  1IW7 D;  3F4R A;  1T6P A;  4A15 A;  3RD8 A;  2E9F A;  4L57 A;  4YIH A;  1GKJ A;  4E88 A;  3KDY A;  1U16 A;  1Z4Q A;  4MUM A;  4FFX A;  4EFC A;  1XWO A;  4HGV A;  1XMC A;  5F91 A;  2J91 A;  2O7E A;  4C5U A;  3CI0 K;  1EB4 A;  4APB A;  2YII A;  3OCE A;  1JSW A;  1XL7 A;  2D28 C;  2O78 A;  1AUW A;  1GKM A;  1K62 A;  2PFM A;  1J3U A;  2YV5 A;  1Z4J A;  3R6V A;  1DCN A;  2JAR A;  2O7B A;  1KQ7 A;  3CRV A;  4IQJ M;  1GK3 A;  2FEN A;  1TJ7 A;  1FUQ A;  2FUS A;  2HVG A;  4L6C A;  2NYF A;  2D27 A;  4NLE A;  3R6Y A;  1Q5N A;  1Q91 A;  2O7F A;  2PTR A;  1TJV A;  2VSF A;  1FUP A;  2JAU A;  4L6A A;  1TJU A;  4MWO A;  1T6J A;  4BAB A;  4C5R A;  1DOF A;  5D6B A;  2I7D A;  1K7W A;  1YFM A;  4APA A;  1HY1 A;  2O7D A;  4CQ5 A;  3BHG A;  3C8T A;  4YIK A;  4MX2 A;  4ADL A;  1MH9 A;  5M0J A;  3CRW 1;  1VDK A;  4NFL A;  1XL8 A;  2JAW A;  3TV2 A;  2VD6 A;  4FLC A;  4V2R A;  3BWV A;  5F92 A;  2OHY A;  4WNL A;  4C6G A;  3KDZ A;  3R6Q A;  1GK2 A;  2RJR A;  4V2Q A;  2FEL A;  3F4S A;  3E04 A;  5H8W A;  1C3U A;  4ADM A;  3CZO A; 
#chains in the Genus database with same CATH homology
 3RRP A;  2RJS A;  3GZH A;  1FUR A;  2X75 A;  1HY0 A;  1I0A A;  3QBP A;  3NO9 A;  1W27 A;  1RE5 A;  1U15 A;  2NYN A;  2QGA B;  1Y2M A;  3GTD A;  4BAA A;  4EEI A;  1YIS A;  3OCF A;  4C5S A;  5EYV A;  1B8F A;  4NSL A;  2PTQ A;  1FUO A;  1TJW A;  5EYT A;  2PTS A;  1YFE A;  3UNV A;  1C3C A;  3NZ4 A;  5HW2 A;  2QVE A;  2O6Y A;  1T6P A;  3RD8 A;  2E9F A;  1GKJ A;  3KDY A;  1U16 A;  4FFX A;  4EFC A;  1XWO A;  4HGV A;  5F91 A;  2J91 A;  2O7E A;  4C5U A;  1EB4 A;  4APB A;  2YII A;  3OCE A;  1JSW A;  2O78 A;  1AUW A;  1GKM A;  1K62 A;  2PFM A;  1J3U A;  3R6V A;  1DCN A;  2O7B A;  1KQ7 A;  1GK3 A;  1TJ7 A;  1FUQ A;  2FUS A;  2HVG A;  2NYF A;  3R6Y A;  4NLE A;  1Q5N A;  2O7F A;  2PTR A;  1TJV A;  1FUP A;  1TJU A;  4BAB A;  1T6J A;  4C5R A;  1DOF A;  5D6B A;  1K7W A;  1YFM A;  4APA A;  1HY1 A;  2O7D A;  4CQ5 A;  3BHG A;  3C8T A;  4ADL A;  4MX2 A;  1VDK A;  3TV2 A;  2VD6 A;  4FLC A;  4V2R A;  5F92 A;  2OHY A;  4C6G A;  3KDZ A;  3R6Q A;  1GK2 A;  2RJR A;  4V2Q A;  3E04 A;  1C3U A;  4ADM A;  3CZO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...