3OCEA

Crystal structure of fumarate lyase:delta crystallin from brucella melitensis bound to cobalt
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
461
structure length
461
Chain Sequence
MTRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGLDASALTIMLDPLRMAFPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Brucella melitensis
publication title Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis bound to cobalt
rcsb
molecule keywords Fumarate lyase:Delta crystallin
total genus 187
structure length 461
sequence length 461
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2010-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3oceA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3oceA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3oceA02
1TJUA 4FLCA 1HY0A 4C6GA 1DOFA 1YFEA 1VDKA 1GKMA 1YISA 2FUSA 1GK3A 2NYNA 3CZOA 1JSWA 2E9FA 3RD8A 1FURA 5F92A 1C3UA 1HY1A 3KDYA 4C5UA 4C5RA 4CQ5A 4C5SA 1RE5A 2NYFA 4ADMA 4V2RA 1TJ7A 2VD6A 5D6BA 3OCFA 4ADLA 1I0AA 2YIIA 4APBA 1GK2A 1J3UA 1KQ7A 2RJRA 3GZHA 2PTRA 3R6YA 2J91A 4NLEA 4FFXA 1C3CA 1FUOA 5EYTA 1K62A 1YFMA 2O7EA 2O7FA 4APAA 2X75A 3KDZA 3R6QA 1Q5NA 3UNVA 3GTDA 1AUWA 1T6PA 4BABA 4EFCA 5EYVA 3R6VA 1TJWA 3BHGA 3NO9A 1B8FA 2O7DA 2QVEA 3NZ4A 4MX2A 3C8TA 4EEIA 1XWOA 3RRPA 3TV2A 1FUPA 1TJVA 2PTSA 4NSLA 1K7WA 4HGVA 3OCEA 3QBPA 4V2QA 1W27A 1U16A 2HVGA 5HW2A 1DCNA 1Y2MA 5F91A 1FUQA 1U15A 1EB4A 3E04A 4BAAA 2RJSA 2O78A 2O6YA 2OHYA 2PFMA 2O7BA 1GKJA 2QGAB 1T6JA 2PTQA
chains in the Genus database with same CATH superfamily
2D27A 1TJUA 4FLCA 1HY0A 4C6GA 1DOFA 1YFEA 1VDKA 1GKMA 1YISA 2FUSA 1GK3A 2NYNA 4WNLA 1MH9A 3CZOA 1JSWA 2E9FA 3RD8A 4IQJM 1FURA 5F92A 1C3UA 1HY1A 1XMDA 2FELA 3KDYA 4C5UA 4C5RA 4CQ5A 4C5SA 1RE5A 2NYFA 2YV5A 2JAWA 4ADMA 3F4SA 4V2RA 1TJ7A 2VD6A 5D6BA 1XMCA 3OCFA 4YIKA 4ADLA 1I0AA 4A15A 3BWVA 2FENA 2YIIA 4APBA 4NFLA 1J3UA 1GK2A 3CRVA 1KQ7A 2RJRA 1Z4KA 3GZHA 2PTRA 1Z4JA 3F4TA 3R6YA 2J91A 5M0JA 1T9HA 4NLEA 4L57A 1C3CA 4FFXA 4E88A 5H8WA 1FUOA 1XL8A 4MWOA 5EYTA 1Z4MA 1K62A 1YFMA 2O7EA 1Z4IA 3U19A 2O7FA 4APAA 3U13A 1T6JA 2VSFA 4YIHA 2X75A 3KDZA 3R6QA 1Q5NA 3UNVA 1IW7D 2VL7A 3GTDA 3F4RA 5M0IA 2RCNA 2JARA 1XL7A 1AUWA 1T6PA 4BABA 4EFCA 3CRW1 1U0LA 5EYVA 3R6VA 1TJWA 3BHGA 3NO9A 1B8FA 2O7DA 2QVEA 2D28C 3NZ4A 4MX2A 3C8TA 4EEIA 1XWOA 3RRPA 4L6CA 1XLYA 3TV2A 1FUPA 1TJVA 2PTSA 4NSLA 1K7WA 4HGVA 3OCEA 3QBPA 4V2QA 1W27A 1U16A 3CI0K 2JAUA 2HVGA 5HW2A 1DCNA 1Y2MA 5F91A 1FUQA 1U15A 1EB4A 3E04A 1Z4PX 1Q91A 4BAAA 4L6AA 2RJSA 1Z4QA 4MUMA 2O78A 2JAOA 2O6YA 2OHYA 2PFMA 2O7BA 1GKJA 1Z4LA 2QGAB 2I7DA 2PTQA 1Q92A
chains in the Genus database with same CATH topology
1TJUA 4FLCA 1HY0A 4C6GA 1DOFA 1YFEA 1VDKA 1GKMA 1YISA 2FUSA 1GK3A 2NYNA 3CZOA 1JSWA 2E9FA 3RD8A 1FURA 5F92A 1C3UA 1HY1A 3KDYA 4C5UA 4C5RA 4CQ5A 4C5SA 1RE5A 2NYFA 4ADMA 4V2RA 1TJ7A 2VD6A 5D6BA 3OCFA 4ADLA 1I0AA 2YIIA 4APBA 1GK2A 1J3UA 1KQ7A 2RJRA 3GZHA 2PTRA 3R6YA 2J91A 4NLEA 4FFXA 1C3CA 1FUOA 5EYTA 1K62A 1YFMA 2O7EA 2O7FA 4APAA 2X75A 3KDZA 3R6QA 1Q5NA 3UNVA 3GTDA 1AUWA 1T6PA 4BABA 4EFCA 5EYVA 3R6VA 1TJWA 3BHGA 3NO9A 1B8FA 2O7DA 2QVEA 3NZ4A 4MX2A 3C8TA 4EEIA 1XWOA 3RRPA 3TV2A 1FUPA 1TJVA 2PTSA 4NSLA 1K7WA 4HGVA 3OCEA 3QBPA 4V2QA 1W27A 1U16A 2HVGA 5HW2A 1DCNA 1Y2MA 5F91A 1FUQA 1U15A 1EB4A 3E04A 4BAAA 2RJSA 2O78A 2O6YA 2OHYA 2PFMA 2O7BA 1GKJA 2QGAB 1T6JA 2PTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TJU A;  4FLC A;  1HY0 A;  4C6G A;  1DOF A;  1YFE A;  1VDK A;  1GKM A;  1YIS A;  2FUS A;  1GK3 A;  2NYN A;  3CZO A;  1JSW A;  2E9F A;  3RD8 A;  1FUR A;  5F92 A;  1C3U A;  1HY1 A;  3KDY A;  4C5U A;  4C5R A;  4CQ5 A;  4C5S A;  1RE5 A;  2NYF A;  4ADM A;  4V2R A;  1TJ7 A;  2VD6 A;  5D6B A;  3OCF A;  4ADL A;  1I0A A;  2YII A;  4APB A;  1GK2 A;  1J3U A;  1KQ7 A;  2RJR A;  3GZH A;  2PTR A;  3R6Y A;  2J91 A;  4NLE A;  4FFX A;  1C3C A;  1FUO A;  5EYT A;  1K62 A;  1YFM A;  2O7E A;  2O7F A;  4APA A;  2X75 A;  3KDZ A;  3R6Q A;  1Q5N A;  3UNV A;  3GTD A;  1AUW A;  1T6P A;  4BAB A;  4EFC A;  5EYV A;  3R6V A;  1TJW A;  3BHG A;  3NO9 A;  1B8F A;  2O7D A;  2QVE A;  3NZ4 A;  4MX2 A;  3C8T A;  4EEI A;  1XWO A;  3RRP A;  3TV2 A;  1FUP A;  1TJV A;  2PTS A;  4NSL A;  1K7W A;  4HGV A;  3OCE A;  3QBP A;  4V2Q A;  1W27 A;  1U16 A;  2HVG A;  5HW2 A;  1DCN A;  1Y2M A;  5F91 A;  1FUQ A;  1U15 A;  1EB4 A;  3E04 A;  4BAA A;  2RJS A;  2O78 A;  2O6Y A;  2OHY A;  2PFM A;  2O7B A;  1GKJ A;  2QGA B;  1T6J A;  2PTQ A; 
#chains in the Genus database with same CATH topology
 2D27 A;  1TJU A;  4FLC A;  1HY0 A;  4C6G A;  1DOF A;  1YFE A;  1VDK A;  1GKM A;  1YIS A;  2FUS A;  1GK3 A;  2NYN A;  4WNL A;  1MH9 A;  3CZO A;  1JSW A;  2E9F A;  3RD8 A;  4IQJ M;  1FUR A;  5F92 A;  1C3U A;  1HY1 A;  1XMD A;  2FEL A;  3KDY A;  4C5U A;  4C5R A;  4CQ5 A;  4C5S A;  1RE5 A;  2NYF A;  2YV5 A;  2JAW A;  4ADM A;  3F4S A;  4V2R A;  1TJ7 A;  2VD6 A;  5D6B A;  1XMC A;  3OCF A;  4YIK A;  4ADL A;  1I0A A;  4A15 A;  3BWV A;  2FEN A;  2YII A;  4APB A;  4NFL A;  1J3U A;  1GK2 A;  3CRV A;  1KQ7 A;  2RJR A;  1Z4K A;  3GZH A;  2PTR A;  1Z4J A;  3F4T A;  3R6Y A;  2J91 A;  5M0J A;  1T9H A;  4NLE A;  4L57 A;  1C3C A;  4FFX A;  4E88 A;  5H8W A;  1FUO A;  1XL8 A;  4MWO A;  5EYT A;  1Z4M A;  1K62 A;  1YFM A;  2O7E A;  1Z4I A;  3U19 A;  2O7F A;  4APA A;  3U13 A;  1T6J A;  2VSF A;  4YIH A;  2X75 A;  3KDZ A;  3R6Q A;  1Q5N A;  3UNV A;  1IW7 D;  2VL7 A;  3GTD A;  3F4R A;  5M0I A;  2RCN A;  2JAR A;  1XL7 A;  1AUW A;  1T6P A;  4BAB A;  4EFC A;  3CRW 1;  1U0L A;  5EYV A;  3R6V A;  1TJW A;  3BHG A;  3NO9 A;  1B8F A;  2O7D A;  2QVE A;  2D28 C;  3NZ4 A;  4MX2 A;  3C8T A;  4EEI A;  1XWO A;  3RRP A;  4L6C A;  1XLY A;  3TV2 A;  1FUP A;  1TJV A;  2PTS A;  4NSL A;  1K7W A;  4HGV A;  3OCE A;  3QBP A;  4V2Q A;  1W27 A;  1U16 A;  3CI0 K;  2JAU A;  2HVG A;  5HW2 A;  1DCN A;  1Y2M A;  5F91 A;  1FUQ A;  1U15 A;  1EB4 A;  3E04 A;  1Z4P X;  1Q91 A;  4BAA A;  4L6A A;  2RJS A;  1Z4Q A;  4MUM A;  2O78 A;  2JAO A;  2O6Y A;  2OHY A;  2PFM A;  2O7B A;  1GKJ A;  1Z4L A;  2QGA B;  2I7D A;  2PTQ A;  1Q92 A; 
#chains in the Genus database with same CATH homology
 1TJU A;  4FLC A;  1HY0 A;  4C6G A;  1DOF A;  1YFE A;  1VDK A;  1GKM A;  1YIS A;  2FUS A;  1GK3 A;  2NYN A;  3CZO A;  1JSW A;  2E9F A;  3RD8 A;  1FUR A;  5F92 A;  1C3U A;  1HY1 A;  3KDY A;  4C5U A;  4C5R A;  4CQ5 A;  4C5S A;  1RE5 A;  2NYF A;  4ADM A;  4V2R A;  1TJ7 A;  2VD6 A;  5D6B A;  3OCF A;  4ADL A;  1I0A A;  2YII A;  4APB A;  1GK2 A;  1J3U A;  1KQ7 A;  2RJR A;  3GZH A;  2PTR A;  3R6Y A;  2J91 A;  4NLE A;  4FFX A;  1C3C A;  1FUO A;  5EYT A;  1K62 A;  1YFM A;  2O7E A;  2O7F A;  4APA A;  2X75 A;  3KDZ A;  3R6Q A;  1Q5N A;  3UNV A;  3GTD A;  1AUW A;  1T6P A;  4BAB A;  4EFC A;  5EYV A;  3R6V A;  1TJW A;  3BHG A;  3NO9 A;  1B8F A;  2O7D A;  2QVE A;  3NZ4 A;  4MX2 A;  3C8T A;  4EEI A;  1XWO A;  3RRP A;  3TV2 A;  1FUP A;  1TJV A;  2PTS A;  4NSL A;  1K7W A;  4HGV A;  3OCE A;  3QBP A;  4V2Q A;  1W27 A;  1U16 A;  2HVG A;  5HW2 A;  1DCN A;  1Y2M A;  5F91 A;  1FUQ A;  1U15 A;  1EB4 A;  3E04 A;  4BAA A;  2RJS A;  2O78 A;  2O6Y A;  2OHY A;  2PFM A;  2O7B A;  1GKJ A;  2QGA B;  1T6J A;  2PTQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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