3OCEA

Crystal structure of fumarate lyase:delta crystallin from brucella melitensis bound to cobalt
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
461
structure length
461
Chain Sequence
b'MTRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGLDASALTIMLDPLRMAFPP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Fumarate lyase:Delta crystallin
publication title Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis bound to cobalt
rcsb
source organism Brucella melitensis
molecule tags Lyase
total genus 187
structure length 461
sequence length 461
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2010-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3oceA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3oceA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3oceA02
2PTQA 2O78A 1B8FA 3R6YA 1FUQA 1C3UA 3GTDA 3OCEA 3QBPA 1GK3A 2PTSA 1TJUA 1EB4A 4EEIA 1TJVA 2QGAB 3BHGA 2OHYA 3KDYA 4FLCA 3NO9A 5F91A 2J91A 4APBA 2E9FA 5F92A 1K7WA 1GKMA 1JSWA 1HY0A 3R6VA 2NYFA 1VDKA 2VD6A 4NSLA 3CZOA 2RJRA 2NYNA 2PTRA 4APAA 4C5RA 3KDZA 1AUWA 1TJ7A 4ADLA 4CQ5A 2HVGA 4MX2A 5D6BA 3OCFA 3GZHA 1GK2A 2RJSA 2O7EA 4ADMA 1T6PA 4EFCA 4C6GA 3R6QA 2O7DA 3E04A 1RE5A 1FURA 1U15A 1YISA 1FUPA 1I0AA 4V2RA 3UNVA 1TJWA 1K62A 4HGVA 4C5UA 1T6JA 1YFEA 4BAAA 5EYVA 2PFMA 2O7FA 3NZ4A 3RRPA 2QVEA 1W27A 3TV2A 2YIIA 1U16A 1C3CA 1Y2MA 1HY1A 1DCNA 2O6YA 4BABA 1YFMA 4NLEA 1GKJA 2X75A 3C8TA 3RD8A 1Q5NA 5HW2A 1XWOA 4FFXA 5EYTA 4V2QA 2O7BA 2FUSA 1J3UA 1FUOA 1DOFA 4C5SA 1KQ7A
chains in the Genus database with same CATH superfamily
2PTQA 2FELA 3U13A 4NFLA 2O78A 1B8FA 3F4TA 3R6YA 1FUQA 1C3UA 3GTDA 3OCEA 1Z4KA 3QBPA 2PTSA 1TJUA 1EB4A 1GK3A 4EEIA 1XMCA 1TJVA 2QGAB 3BHGA 3CRVA 2OHYA 3F4SA 3KDYA 1XL8A 4FLCA 2D27A 3NO9A 1Z4LA 5F91A 1Z4PX 2J91A 4APBA 2E9FA 1IW7D 4WNLA 5F92A 1K7WA 1GKMA 1JSWA 1HY0A 1MH9A 2RCNA 5M0IA 3BWVA 1XMDA 3R6VA 2NYFA 1VDKA 2VD6A 4NSLA 4L6AA 1Z4IA 3CZOA 2RJRA 2NYNA 2FENA 2PTRA 4APAA 4L57A 4C5RA 3KDZA 1AUWA 1TJ7A 1U0LA 4ADLA 2HVGA 4MX2A 5D6BA 4CQ5A 1Q92A 2JAUA 3OCFA 4A15A 3GZHA 1GK2A 5M0JA 2RJSA 2O7EA 4ADMA 1Z4JA 1T6PA 4EFCA 2JARA 4C6GA 3R6QA 3F4RA 2O7DA 1Z4QA 4MWOA 1XL7A 5H8WA 3E04A 1RE5A 1FURA 1U15A 1YISA 1FUPA 1I0AA 4V2RA 3UNVA 1TJWA 2YV5A 1K62A 4YIHA 3U19A 4HGVA 4C5UA 1T6JA 2JAWA 1YFEA 4BAAA 1Z4MA 2I7DA 3CRW1 2JAOA 5EYVA 2PFMA 2O7FA 4YIKA 3NZ4A 2D28C 3RRPA 2QVEA 3CI0K 1W27A 3TV2A 2YIIA 1U16A 1C3CA 1Y2MA 1HY1A 1DCNA 4L6CA 2O6YA 4BABA 1YFMA 4NLEA 1GKJA 1XLYA 2X75A 3C8TA 3RD8A 4MUMA 1Q5NA 5HW2A 1XWOA 2VL7A 4FFXA 4IQJM 1Q91A 5EYTA 4E88A 4V2QA 2O7BA 1T9HA 2FUSA 2VSFA 1J3UA 1FUOA 1DOFA 4C5SA 1KQ7A
chains in the Genus database with same CATH topology
2PTQA 2O78A 1B8FA 3R6YA 1FUQA 1C3UA 3GTDA 3OCEA 3QBPA 1GK3A 2PTSA 1TJUA 1EB4A 4EEIA 1TJVA 2QGAB 3BHGA 2OHYA 3KDYA 4FLCA 3NO9A 5F91A 2J91A 4APBA 2E9FA 5F92A 1K7WA 1GKMA 1JSWA 1HY0A 3R6VA 2NYFA 1VDKA 2VD6A 4NSLA 3CZOA 2RJRA 2NYNA 2PTRA 4APAA 4C5RA 3KDZA 1AUWA 1TJ7A 4ADLA 4CQ5A 2HVGA 4MX2A 5D6BA 3OCFA 3GZHA 1GK2A 2RJSA 2O7EA 4ADMA 1T6PA 4EFCA 4C6GA 3R6QA 2O7DA 3E04A 1RE5A 1FURA 1U15A 1YISA 1FUPA 1I0AA 4V2RA 3UNVA 1TJWA 1K62A 4HGVA 4C5UA 1T6JA 1YFEA 4BAAA 5EYVA 2PFMA 2O7FA 3NZ4A 3RRPA 2QVEA 1W27A 3TV2A 2YIIA 1U16A 1C3CA 1Y2MA 1HY1A 1DCNA 2O6YA 4BABA 1YFMA 4NLEA 1GKJA 2X75A 3C8TA 3RD8A 1Q5NA 5HW2A 1XWOA 4FFXA 5EYTA 4V2QA 2O7BA 2FUSA 1J3UA 1FUOA 1DOFA 4C5SA 1KQ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PTQ A;  2O78 A;  1B8F A;  3R6Y A;  1FUQ A;  1C3U A;  3GTD A;  3OCE A;  3QBP A;  1GK3 A;  2PTS A;  1TJU A;  1EB4 A;  4EEI A;  1TJV A;  2QGA B;  3BHG A;  2OHY A;  3KDY A;  4FLC A;  3NO9 A;  5F91 A;  2J91 A;  4APB A;  2E9F A;  5F92 A;  1K7W A;  1GKM A;  1JSW A;  1HY0 A;  3R6V A;  2NYF A;  1VDK A;  2VD6 A;  4NSL A;  3CZO A;  2RJR A;  2NYN A;  2PTR A;  4APA A;  4C5R A;  3KDZ A;  1AUW A;  1TJ7 A;  4ADL A;  4CQ5 A;  2HVG A;  4MX2 A;  5D6B A;  3OCF A;  3GZH A;  1GK2 A;  2RJS A;  2O7E A;  4ADM A;  1T6P A;  4EFC A;  4C6G A;  3R6Q A;  2O7D A;  3E04 A;  1RE5 A;  1FUR A;  1U15 A;  1YIS A;  1FUP A;  1I0A A;  4V2R A;  3UNV A;  1TJW A;  1K62 A;  4HGV A;  4C5U A;  1T6J A;  1YFE A;  4BAA A;  5EYV A;  2PFM A;  2O7F A;  3NZ4 A;  3RRP A;  2QVE A;  1W27 A;  3TV2 A;  2YII A;  1U16 A;  1C3C A;  1Y2M A;  1HY1 A;  1DCN A;  2O6Y A;  4BAB A;  1YFM A;  4NLE A;  1GKJ A;  2X75 A;  3C8T A;  3RD8 A;  1Q5N A;  5HW2 A;  1XWO A;  4FFX A;  5EYT A;  4V2Q A;  2O7B A;  2FUS A;  1J3U A;  1FUO A;  1DOF A;  4C5S A;  1KQ7 A; 
#chains in the Genus database with same CATH topology
 2PTQ A;  2FEL A;  3U13 A;  4NFL A;  2O78 A;  1B8F A;  3F4T A;  3R6Y A;  1FUQ A;  1C3U A;  3GTD A;  3OCE A;  1Z4K A;  3QBP A;  2PTS A;  1TJU A;  1EB4 A;  1GK3 A;  4EEI A;  1XMC A;  1TJV A;  2QGA B;  3BHG A;  3CRV A;  2OHY A;  3F4S A;  3KDY A;  1XL8 A;  4FLC A;  2D27 A;  3NO9 A;  1Z4L A;  5F91 A;  1Z4P X;  2J91 A;  4APB A;  2E9F A;  1IW7 D;  4WNL A;  5F92 A;  1K7W A;  1GKM A;  1JSW A;  1HY0 A;  1MH9 A;  2RCN A;  5M0I A;  3BWV A;  1XMD A;  3R6V A;  2NYF A;  1VDK A;  2VD6 A;  4NSL A;  4L6A A;  1Z4I A;  3CZO A;  2RJR A;  2NYN A;  2FEN A;  2PTR A;  4APA A;  4L57 A;  4C5R A;  3KDZ A;  1AUW A;  1TJ7 A;  1U0L A;  4ADL A;  2HVG A;  4MX2 A;  5D6B A;  4CQ5 A;  1Q92 A;  2JAU A;  3OCF A;  4A15 A;  3GZH A;  1GK2 A;  5M0J A;  2RJS A;  2O7E A;  4ADM A;  1Z4J A;  1T6P A;  4EFC A;  2JAR A;  4C6G A;  3R6Q A;  3F4R A;  2O7D A;  1Z4Q A;  4MWO A;  1XL7 A;  5H8W A;  3E04 A;  1RE5 A;  1FUR A;  1U15 A;  1YIS A;  1FUP A;  1I0A A;  4V2R A;  3UNV A;  1TJW A;  2YV5 A;  1K62 A;  4YIH A;  3U19 A;  4HGV A;  4C5U A;  1T6J A;  2JAW A;  1YFE A;  4BAA A;  1Z4M A;  2I7D A;  3CRW 1;  2JAO A;  5EYV A;  2PFM A;  2O7F A;  4YIK A;  3NZ4 A;  2D28 C;  3RRP A;  2QVE A;  3CI0 K;  1W27 A;  3TV2 A;  2YII A;  1U16 A;  1C3C A;  1Y2M A;  1HY1 A;  1DCN A;  4L6C A;  2O6Y A;  4BAB A;  1YFM A;  4NLE A;  1GKJ A;  1XLY A;  2X75 A;  3C8T A;  3RD8 A;  4MUM A;  1Q5N A;  5HW2 A;  1XWO A;  2VL7 A;  4FFX A;  4IQJ M;  1Q91 A;  5EYT A;  4E88 A;  4V2Q A;  2O7B A;  1T9H A;  2FUS A;  2VSF A;  1J3U A;  1FUO A;  1DOF A;  4C5S A;  1KQ7 A; 
#chains in the Genus database with same CATH homology
 2PTQ A;  2O78 A;  1B8F A;  3R6Y A;  1FUQ A;  1C3U A;  3GTD A;  3OCE A;  3QBP A;  1GK3 A;  2PTS A;  1TJU A;  1EB4 A;  4EEI A;  1TJV A;  2QGA B;  3BHG A;  2OHY A;  3KDY A;  4FLC A;  3NO9 A;  5F91 A;  2J91 A;  4APB A;  2E9F A;  5F92 A;  1K7W A;  1GKM A;  1JSW A;  1HY0 A;  3R6V A;  2NYF A;  1VDK A;  2VD6 A;  4NSL A;  3CZO A;  2RJR A;  2NYN A;  2PTR A;  4APA A;  4C5R A;  3KDZ A;  1AUW A;  1TJ7 A;  4ADL A;  4CQ5 A;  2HVG A;  4MX2 A;  5D6B A;  3OCF A;  3GZH A;  1GK2 A;  2RJS A;  2O7E A;  4ADM A;  1T6P A;  4EFC A;  4C6G A;  3R6Q A;  2O7D A;  3E04 A;  1RE5 A;  1FUR A;  1U15 A;  1YIS A;  1FUP A;  1I0A A;  4V2R A;  3UNV A;  1TJW A;  1K62 A;  4HGV A;  4C5U A;  1T6J A;  1YFE A;  4BAA A;  5EYV A;  2PFM A;  2O7F A;  3NZ4 A;  3RRP A;  2QVE A;  1W27 A;  3TV2 A;  2YII A;  1U16 A;  1C3C A;  1Y2M A;  1HY1 A;  1DCN A;  2O6Y A;  4BAB A;  1YFM A;  4NLE A;  1GKJ A;  2X75 A;  3C8T A;  3RD8 A;  1Q5N A;  5HW2 A;  1XWO A;  4FFX A;  5EYT A;  4V2Q A;  2O7B A;  2FUS A;  1J3U A;  1FUO A;  1DOF A;  4C5S A;  1KQ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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