1U16A

Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm) in complex with sulfate
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
449
structure length
449
Chain Sequence
STDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Lyase
molecule keywords Delta crystallin I
total genus 186
structure length 449
sequence length 449
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1u16A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1u16A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1u16A02
1I0AA 2QVEA 1RE5A 1TJWA 4HGVA 1K7WA 1T6JA 1C3CA 4FLCA 1YISA 1FUOA 1W27A 1XWOA 3KDYA 1K62A 3UNVA 3R6VA 4EEIA 4C5RA 3RRPA 2VD6A 4V2QA 3KDZA 1DCNA 1TJVA 2OHYA 4V2RA 2RJSA 4ADLA 1GK2A 1U15A 2RJRA 2O7FA 1FUPA 1TJUA 2NYNA 1HY1A 3CZOA 1KQ7A 2O7DA 1JSWA 4CQ5A 4APBA 4BAAA 1VDKA 4ADMA 1YFMA 4NSLA 1B8FA 1FUQA 2X75A 2E9FA 3OCFA 2O7EA 4C5SA 2FUSA 2HVGA 1Y2MA 1C3UA 2J91A 1GKMA 2PTQA 5D6BA 2PTSA 3QBPA 1GK3A 5F92A 1Q5NA 3E04A 3NZ4A 5HW2A 3OCEA 1YFEA 3NO9A 2O78A 3R6YA 2YIIA 1T6PA 3GZHA 1U16A 1FURA 3R6QA 3C8TA 2O6YA 4BABA 1HY0A 5F91A 4APAA 2QGAB 4NLEA 1DOFA 4MX2A 1TJ7A 2O7BA 4C6GA 2PFMA 4C5UA 3RD8A 3TV2A 1GKJA 2NYFA 3GTDA 2PTRA 4FFXA 1AUWA 1EB4A 5EYTA 4EFCA 1J3UA 3BHGA 5EYVA
chains in the Genus database with same CATH superfamily
1I0AA 2QVEA 1RE5A 1TJWA 2VSFA 4HGVA 1K7WA 1T6JA 4IQJM 1C3CA 4FLCA 1YISA 1XMDA 1FUOA 1XL8A 4L6AA 1XLYA 1Z4IA 4MWOA 1W27A 1XWOA 3KDYA 1K62A 3UNVA 3R6VA 4EEIA 4C5RA 3RRPA 2VD6A 4V2QA 1Z4KA 1IW7D 3KDZA 1DCNA 2JAWA 1TJVA 2OHYA 3U19A 4V2RA 2RJSA 4ADLA 1GK2A 1U15A 2RJRA 2O7FA 4WNLA 1FUPA 1TJUA 4L57A 2NYNA 1HY1A 3CZOA 1KQ7A 2FELA 1T9HA 4EFCA 2RCNA 2O7DA 1JSWA 3CRW1 4CQ5A 4APBA 5M0JA 4BAAA 1VDKA 4ADMA 3F4RA 1YFMA 4NSLA 1B8FA 3CRVA 1XMCA 3CI0K 1FUQA 2X75A 2E9FA 3OCFA 2I7DA 2O7EA 2VL7A 1U0LA 4C5SA 2FUSA 2HVGA 1Y2MA 4L6CA 4YIKA 1C3UA 3U13A 2J91A 2YV5A 1Z4QA 1GKMA 2PTQA 5D6BA 2D27A 1Q91A 1XL7A 2PTSA 3QBPA 1GK3A 5F92A 2FENA 1Q5NA 3BWVA 3E04A 3NZ4A 5HW2A 1Q92A 3OCEA 5H8WA 1YFEA 4MUMA 3NO9A 3F4TA 2O78A 3R6YA 2YIIA 1T6PA 3GZHA 1U16A 5M0IA 1FURA 3R6QA 4NFLA 3C8TA 2JAOA 2O6YA 4BABA 1MH9A 4E88A 1HY0A 5F91A 4A15A 4APAA 2QGAB 1Z4LA 4NLEA 1DOFA 4MX2A 1TJ7A 4YIHA 2O7BA 4C6GA 2PFMA 4C5UA 3RD8A 3F4SA 1Z4JA 2D28C 3TV2A 1Z4PX 1Z4MA 1GKJA 3GTDA 2JARA 2PTRA 2NYFA 4FFXA 1AUWA 1EB4A 5EYTA 2JAUA 1J3UA 3BHGA 5EYVA
chains in the Genus database with same CATH topology
1I0AA 2QVEA 1RE5A 1TJWA 4HGVA 1K7WA 1T6JA 1C3CA 4FLCA 1YISA 1FUOA 1W27A 1XWOA 3KDYA 1K62A 3UNVA 3R6VA 4EEIA 4C5RA 3RRPA 2VD6A 4V2QA 3KDZA 1DCNA 1TJVA 2OHYA 4V2RA 2RJSA 4ADLA 1GK2A 1U15A 2RJRA 2O7FA 1FUPA 1TJUA 2NYNA 1HY1A 3CZOA 1KQ7A 2O7DA 1JSWA 4CQ5A 4APBA 4BAAA 1VDKA 4ADMA 1YFMA 4NSLA 1B8FA 1FUQA 2X75A 2E9FA 3OCFA 2O7EA 4C5SA 2FUSA 2HVGA 1Y2MA 1C3UA 2J91A 1GKMA 2PTQA 5D6BA 2PTSA 3QBPA 1GK3A 5F92A 1Q5NA 3E04A 3NZ4A 5HW2A 3OCEA 1YFEA 3NO9A 2O78A 3R6YA 2YIIA 1T6PA 3GZHA 1U16A 1FURA 3R6QA 3C8TA 2O6YA 4BABA 1HY0A 5F91A 4APAA 2QGAB 4NLEA 1DOFA 4MX2A 1TJ7A 2O7BA 4C6GA 2PFMA 4C5UA 3RD8A 3TV2A 1GKJA 2NYFA 3GTDA 2PTRA 4FFXA 1AUWA 1EB4A 5EYTA 4EFCA 1J3UA 3BHGA 5EYVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I0A A;  2QVE A;  1RE5 A;  1TJW A;  4HGV A;  1K7W A;  1T6J A;  1C3C A;  4FLC A;  1YIS A;  1FUO A;  1W27 A;  1XWO A;  3KDY A;  1K62 A;  3UNV A;  3R6V A;  4EEI A;  4C5R A;  3RRP A;  2VD6 A;  4V2Q A;  3KDZ A;  1DCN A;  1TJV A;  2OHY A;  4V2R A;  2RJS A;  4ADL A;  1GK2 A;  1U15 A;  2RJR A;  2O7F A;  1FUP A;  1TJU A;  2NYN A;  1HY1 A;  3CZO A;  1KQ7 A;  2O7D A;  1JSW A;  4CQ5 A;  4APB A;  4BAA A;  1VDK A;  4ADM A;  1YFM A;  4NSL A;  1B8F A;  1FUQ A;  2X75 A;  2E9F A;  3OCF A;  2O7E A;  4C5S A;  2FUS A;  2HVG A;  1Y2M A;  1C3U A;  2J91 A;  1GKM A;  2PTQ A;  5D6B A;  2PTS A;  3QBP A;  1GK3 A;  5F92 A;  1Q5N A;  3E04 A;  3NZ4 A;  5HW2 A;  3OCE A;  1YFE A;  3NO9 A;  2O78 A;  3R6Y A;  2YII A;  1T6P A;  3GZH A;  1U16 A;  1FUR A;  3R6Q A;  3C8T A;  2O6Y A;  4BAB A;  1HY0 A;  5F91 A;  4APA A;  2QGA B;  4NLE A;  1DOF A;  4MX2 A;  1TJ7 A;  2O7B A;  4C6G A;  2PFM A;  4C5U A;  3RD8 A;  3TV2 A;  1GKJ A;  2NYF A;  3GTD A;  2PTR A;  4FFX A;  1AUW A;  1EB4 A;  5EYT A;  4EFC A;  1J3U A;  3BHG A;  5EYV A; 
#chains in the Genus database with same CATH topology
 1I0A A;  2QVE A;  1RE5 A;  1TJW A;  2VSF A;  4HGV A;  1K7W A;  1T6J A;  4IQJ M;  1C3C A;  4FLC A;  1YIS A;  1XMD A;  1FUO A;  1XL8 A;  4L6A A;  1XLY A;  1Z4I A;  4MWO A;  1W27 A;  1XWO A;  3KDY A;  1K62 A;  3UNV A;  3R6V A;  4EEI A;  4C5R A;  3RRP A;  2VD6 A;  4V2Q A;  1Z4K A;  1IW7 D;  3KDZ A;  1DCN A;  2JAW A;  1TJV A;  2OHY A;  3U19 A;  4V2R A;  2RJS A;  4ADL A;  1GK2 A;  1U15 A;  2RJR A;  2O7F A;  4WNL A;  1FUP A;  1TJU A;  4L57 A;  2NYN A;  1HY1 A;  3CZO A;  1KQ7 A;  2FEL A;  1T9H A;  4EFC A;  2RCN A;  2O7D A;  1JSW A;  3CRW 1;  4CQ5 A;  4APB A;  5M0J A;  4BAA A;  1VDK A;  4ADM A;  3F4R A;  1YFM A;  4NSL A;  1B8F A;  3CRV A;  1XMC A;  3CI0 K;  1FUQ A;  2X75 A;  2E9F A;  3OCF A;  2I7D A;  2O7E A;  2VL7 A;  1U0L A;  4C5S A;  2FUS A;  2HVG A;  1Y2M A;  4L6C A;  4YIK A;  1C3U A;  3U13 A;  2J91 A;  2YV5 A;  1Z4Q A;  1GKM A;  2PTQ A;  5D6B A;  2D27 A;  1Q91 A;  1XL7 A;  2PTS A;  3QBP A;  1GK3 A;  5F92 A;  2FEN A;  1Q5N A;  3BWV A;  3E04 A;  3NZ4 A;  5HW2 A;  1Q92 A;  3OCE A;  5H8W A;  1YFE A;  4MUM A;  3NO9 A;  3F4T A;  2O78 A;  3R6Y A;  2YII A;  1T6P A;  3GZH A;  1U16 A;  5M0I A;  1FUR A;  3R6Q A;  4NFL A;  3C8T A;  2JAO A;  2O6Y A;  4BAB A;  1MH9 A;  4E88 A;  1HY0 A;  5F91 A;  4A15 A;  4APA A;  2QGA B;  1Z4L A;  4NLE A;  1DOF A;  4MX2 A;  1TJ7 A;  4YIH A;  2O7B A;  4C6G A;  2PFM A;  4C5U A;  3RD8 A;  3F4S A;  1Z4J A;  2D28 C;  3TV2 A;  1Z4P X;  1Z4M A;  1GKJ A;  3GTD A;  2JAR A;  2PTR A;  2NYF A;  4FFX A;  1AUW A;  1EB4 A;  5EYT A;  2JAU A;  1J3U A;  3BHG A;  5EYV A; 
#chains in the Genus database with same CATH homology
 1I0A A;  2QVE A;  1RE5 A;  1TJW A;  4HGV A;  1K7W A;  1T6J A;  1C3C A;  4FLC A;  1YIS A;  1FUO A;  1W27 A;  1XWO A;  3KDY A;  1K62 A;  3UNV A;  3R6V A;  4EEI A;  4C5R A;  3RRP A;  2VD6 A;  4V2Q A;  3KDZ A;  1DCN A;  1TJV A;  2OHY A;  4V2R A;  2RJS A;  4ADL A;  1GK2 A;  1U15 A;  2RJR A;  2O7F A;  1FUP A;  1TJU A;  2NYN A;  1HY1 A;  3CZO A;  1KQ7 A;  2O7D A;  1JSW A;  4CQ5 A;  4APB A;  4BAA A;  1VDK A;  4ADM A;  1YFM A;  4NSL A;  1B8F A;  1FUQ A;  2X75 A;  2E9F A;  3OCF A;  2O7E A;  4C5S A;  2FUS A;  2HVG A;  1Y2M A;  1C3U A;  2J91 A;  1GKM A;  2PTQ A;  5D6B A;  2PTS A;  3QBP A;  1GK3 A;  5F92 A;  1Q5N A;  3E04 A;  3NZ4 A;  5HW2 A;  3OCE A;  1YFE A;  3NO9 A;  2O78 A;  3R6Y A;  2YII A;  1T6P A;  3GZH A;  1U16 A;  1FUR A;  3R6Q A;  3C8T A;  2O6Y A;  4BAB A;  1HY0 A;  5F91 A;  4APA A;  2QGA B;  4NLE A;  1DOF A;  4MX2 A;  1TJ7 A;  2O7B A;  4C6G A;  2PFM A;  4C5U A;  3RD8 A;  3TV2 A;  1GKJ A;  2NYF A;  3GTD A;  2PTR A;  4FFX A;  1AUW A;  1EB4 A;  5EYT A;  4EFC A;  1J3U A;  3BHG A;  5EYV A; 
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similar chains in the pdb database (?% sequence similarity)

 
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