1U16A

Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm) in complex with sulfate
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
449
structure length
449
Chain Sequence
STDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Delta crystallin I
publication title A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Lyase
total genus 186
structure length 449
sequence length 449
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1u16A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1u16A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1u16A02
5F91A 4NSLA 1T6JA 1GK2A 3NZ4A 1FURA 1YFEA 4APBA 5F92A 2NYFA 1TJVA 4MX2A 3QBPA 1GK3A 2O7DA 5EYVA 3RRPA 1TJUA 4V2QA 5EYTA 1U16A 2O7EA 2YIIA 2FUSA 3KDZA 1B8FA 4NLEA 5D6BA 2QVEA 1FUPA 1VDKA 2PTSA 4EFCA 4CQ5A 3CZOA 2NYNA 1HY0A 1C3CA 4FLCA 4C5RA 4FFXA 4ADMA 3OCFA 2QGAB 2X75A 3OCEA 2E9FA 1DOFA 4BAAA 4APAA 2J91A 3NO9A 4ADLA 1Q5NA 5HW2A 2O7BA 4C5SA 1FUOA 2PTQA 1DCNA 3BHGA 3E04A 1K7WA 2O78A 1XWOA 3UNVA 3C8TA 4C5UA 2RJRA 1T6PA 1RE5A 1AUWA 1TJWA 4EEIA 2RJSA 4V2RA 3KDYA 4C6GA 4BABA 1C3UA 3R6QA 1J3UA 3R6YA 1GKJA 1FUQA 2PTRA 1W27A 3GZHA 1TJ7A 1YISA 1KQ7A 1Y2MA 2VD6A 1YFMA 1I0AA 1GKMA 2O7FA 1HY1A 3R6VA 1JSWA 3GTDA 1U15A 4HGVA 3RD8A 2HVGA 1EB4A 2PFMA 1K62A 2OHYA 2O6YA 3TV2A
chains in the Genus database with same CATH superfamily
5F91A 4NSLA 3CI0K 2D27A 1Z4PX 4L6CA 1T6JA 1GK2A 3NZ4A 1MH9A 1FURA 1YFEA 4APBA 5F92A 1XMDA 2NYFA 1TJVA 4MX2A 2JAWA 3BWVA 1Z4JA 3QBPA 4MUMA 1GK3A 3U13A 2O7DA 5EYVA 2YV5A 4IQJM 3RRPA 1TJUA 4V2QA 5EYTA 1XL7A 1U16A 3F4TA 5H8WA 2O7EA 2YIIA 2JAOA 2FUSA 2VSFA 3U19A 1Q92A 3KDZA 1B8FA 4NLEA 5D6BA 2QVEA 4WNLA 4YIHA 1FUPA 5M0IA 1VDKA 4YIKA 2PTSA 4EFCA 4CQ5A 3CZOA 2NYNA 1HY0A 1C3CA 4FLCA 4C5RA 2D28C 2FENA 4FFXA 4ADMA 2RCNA 3OCFA 2I7DA 2QGAB 2X75A 1XL8A 3OCEA 2E9FA 1DOFA 2VL7A 4BAAA 4A15A 2JAUA 1IW7D 4APAA 1Z4IA 2J91A 3NO9A 4ADLA 4L6AA 1Q5NA 5HW2A 2O7BA 4NFLA 4C5SA 1FUOA 1XMCA 2PTQA 1DCNA 3BHGA 3E04A 1U0LA 1K7WA 2O78A 1XWOA 3UNVA 3C8TA 4C5UA 2RJRA 1T6PA 1RE5A 2FELA 1AUWA 1TJWA 4EEIA 2RJSA 4V2RA 3KDYA 4C6GA 1Z4MA 3F4RA 4BABA 1C3UA 3R6QA 1J3UA 4E88A 3R6YA 1GKJA 1FUQA 2PTRA 1W27A 1Z4QA 3GZHA 1TJ7A 1YISA 1Z4LA 1KQ7A 1Y2MA 2VD6A 1YFMA 1I0AA 1GKMA 3CRVA 4L57A 2O7FA 1HY1A 3R6VA 1JSWA 3F4SA 3GTDA 1Q91A 1U15A 4HGVA 1Z4KA 2JARA 1XLYA 3RD8A 5M0JA 2HVGA 1EB4A 3CRW1 4MWOA 2PFMA 1K62A 2OHYA 1T9HA 2O6YA 3TV2A
chains in the Genus database with same CATH topology
5F91A 4NSLA 1T6JA 1GK2A 3NZ4A 1FURA 1YFEA 4APBA 5F92A 2NYFA 1TJVA 4MX2A 3QBPA 1GK3A 2O7DA 5EYVA 3RRPA 1TJUA 4V2QA 5EYTA 1U16A 2O7EA 2YIIA 2FUSA 3KDZA 1B8FA 4NLEA 5D6BA 2QVEA 1FUPA 1VDKA 2PTSA 4EFCA 4CQ5A 3CZOA 2NYNA 1HY0A 1C3CA 4FLCA 4C5RA 4FFXA 4ADMA 3OCFA 2QGAB 2X75A 3OCEA 2E9FA 1DOFA 4BAAA 4APAA 2J91A 3NO9A 4ADLA 1Q5NA 5HW2A 2O7BA 4C5SA 1FUOA 2PTQA 1DCNA 3BHGA 3E04A 1K7WA 2O78A 1XWOA 3UNVA 3C8TA 4C5UA 2RJRA 1T6PA 1RE5A 1AUWA 1TJWA 4EEIA 2RJSA 4V2RA 3KDYA 4C6GA 4BABA 1C3UA 3R6QA 1J3UA 3R6YA 1GKJA 1FUQA 2PTRA 1W27A 3GZHA 1TJ7A 1YISA 1KQ7A 1Y2MA 2VD6A 1YFMA 1I0AA 1GKMA 2O7FA 1HY1A 3R6VA 1JSWA 3GTDA 1U15A 4HGVA 3RD8A 2HVGA 1EB4A 2PFMA 1K62A 2OHYA 2O6YA 3TV2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5F91 A;  4NSL A;  1T6J A;  1GK2 A;  3NZ4 A;  1FUR A;  1YFE A;  4APB A;  5F92 A;  2NYF A;  1TJV A;  4MX2 A;  3QBP A;  1GK3 A;  2O7D A;  5EYV A;  3RRP A;  1TJU A;  4V2Q A;  5EYT A;  1U16 A;  2O7E A;  2YII A;  2FUS A;  3KDZ A;  1B8F A;  4NLE A;  5D6B A;  2QVE A;  1FUP A;  1VDK A;  2PTS A;  4EFC A;  4CQ5 A;  3CZO A;  2NYN A;  1HY0 A;  1C3C A;  4FLC A;  4C5R A;  4FFX A;  4ADM A;  3OCF A;  2QGA B;  2X75 A;  3OCE A;  2E9F A;  1DOF A;  4BAA A;  4APA A;  2J91 A;  3NO9 A;  4ADL A;  1Q5N A;  5HW2 A;  2O7B A;  4C5S A;  1FUO A;  2PTQ A;  1DCN A;  3BHG A;  3E04 A;  1K7W A;  2O78 A;  1XWO A;  3UNV A;  3C8T A;  4C5U A;  2RJR A;  1T6P A;  1RE5 A;  1AUW A;  1TJW A;  4EEI A;  2RJS A;  4V2R A;  3KDY A;  4C6G A;  4BAB A;  1C3U A;  3R6Q A;  1J3U A;  3R6Y A;  1GKJ A;  1FUQ A;  2PTR A;  1W27 A;  3GZH A;  1TJ7 A;  1YIS A;  1KQ7 A;  1Y2M A;  2VD6 A;  1YFM A;  1I0A A;  1GKM A;  2O7F A;  1HY1 A;  3R6V A;  1JSW A;  3GTD A;  1U15 A;  4HGV A;  3RD8 A;  2HVG A;  1EB4 A;  2PFM A;  1K62 A;  2OHY A;  2O6Y A;  3TV2 A; 
#chains in the Genus database with same CATH topology
 5F91 A;  4NSL A;  3CI0 K;  2D27 A;  1Z4P X;  4L6C A;  1T6J A;  1GK2 A;  3NZ4 A;  1MH9 A;  1FUR A;  1YFE A;  4APB A;  5F92 A;  1XMD A;  2NYF A;  1TJV A;  4MX2 A;  2JAW A;  3BWV A;  1Z4J A;  3QBP A;  4MUM A;  1GK3 A;  3U13 A;  2O7D A;  5EYV A;  2YV5 A;  4IQJ M;  3RRP A;  1TJU A;  4V2Q A;  5EYT A;  1XL7 A;  1U16 A;  3F4T A;  5H8W A;  2O7E A;  2YII A;  2JAO A;  2FUS A;  2VSF A;  3U19 A;  1Q92 A;  3KDZ A;  1B8F A;  4NLE A;  5D6B A;  2QVE A;  4WNL A;  4YIH A;  1FUP A;  5M0I A;  1VDK A;  4YIK A;  2PTS A;  4EFC A;  4CQ5 A;  3CZO A;  2NYN A;  1HY0 A;  1C3C A;  4FLC A;  4C5R A;  2D28 C;  2FEN A;  4FFX A;  4ADM A;  2RCN A;  3OCF A;  2I7D A;  2QGA B;  2X75 A;  1XL8 A;  3OCE A;  2E9F A;  1DOF A;  2VL7 A;  4BAA A;  4A15 A;  2JAU A;  1IW7 D;  4APA A;  1Z4I A;  2J91 A;  3NO9 A;  4ADL A;  4L6A A;  1Q5N A;  5HW2 A;  2O7B A;  4NFL A;  4C5S A;  1FUO A;  1XMC A;  2PTQ A;  1DCN A;  3BHG A;  3E04 A;  1U0L A;  1K7W A;  2O78 A;  1XWO A;  3UNV A;  3C8T A;  4C5U A;  2RJR A;  1T6P A;  1RE5 A;  2FEL A;  1AUW A;  1TJW A;  4EEI A;  2RJS A;  4V2R A;  3KDY A;  4C6G A;  1Z4M A;  3F4R A;  4BAB A;  1C3U A;  3R6Q A;  1J3U A;  4E88 A;  3R6Y A;  1GKJ A;  1FUQ A;  2PTR A;  1W27 A;  1Z4Q A;  3GZH A;  1TJ7 A;  1YIS A;  1Z4L A;  1KQ7 A;  1Y2M A;  2VD6 A;  1YFM A;  1I0A A;  1GKM A;  3CRV A;  4L57 A;  2O7F A;  1HY1 A;  3R6V A;  1JSW A;  3F4S A;  3GTD A;  1Q91 A;  1U15 A;  4HGV A;  1Z4K A;  2JAR A;  1XLY A;  3RD8 A;  5M0J A;  2HVG A;  1EB4 A;  3CRW 1;  4MWO A;  2PFM A;  1K62 A;  2OHY A;  1T9H A;  2O6Y A;  3TV2 A; 
#chains in the Genus database with same CATH homology
 5F91 A;  4NSL A;  1T6J A;  1GK2 A;  3NZ4 A;  1FUR A;  1YFE A;  4APB A;  5F92 A;  2NYF A;  1TJV A;  4MX2 A;  3QBP A;  1GK3 A;  2O7D A;  5EYV A;  3RRP A;  1TJU A;  4V2Q A;  5EYT A;  1U16 A;  2O7E A;  2YII A;  2FUS A;  3KDZ A;  1B8F A;  4NLE A;  5D6B A;  2QVE A;  1FUP A;  1VDK A;  2PTS A;  4EFC A;  4CQ5 A;  3CZO A;  2NYN A;  1HY0 A;  1C3C A;  4FLC A;  4C5R A;  4FFX A;  4ADM A;  3OCF A;  2QGA B;  2X75 A;  3OCE A;  2E9F A;  1DOF A;  4BAA A;  4APA A;  2J91 A;  3NO9 A;  4ADL A;  1Q5N A;  5HW2 A;  2O7B A;  4C5S A;  1FUO A;  2PTQ A;  1DCN A;  3BHG A;  3E04 A;  1K7W A;  2O78 A;  1XWO A;  3UNV A;  3C8T A;  4C5U A;  2RJR A;  1T6P A;  1RE5 A;  1AUW A;  1TJW A;  4EEI A;  2RJS A;  4V2R A;  3KDY A;  4C6G A;  4BAB A;  1C3U A;  3R6Q A;  1J3U A;  3R6Y A;  1GKJ A;  1FUQ A;  2PTR A;  1W27 A;  3GZH A;  1TJ7 A;  1YIS A;  1KQ7 A;  1Y2M A;  2VD6 A;  1YFM A;  1I0A A;  1GKM A;  2O7F A;  1HY1 A;  3R6V A;  1JSW A;  3GTD A;  1U15 A;  4HGV A;  3RD8 A;  2HVG A;  1EB4 A;  2PFM A;  1K62 A;  2OHY A;  2O6Y A;  3TV2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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