1U16A

Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm) in complex with sulfate
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
449
structure length
449
Chain Sequence
STDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Delta crystallin I
publication title A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
pubmed doi rcsb
source organism Anas platyrhynchos
total genus 186
structure length 449
sequence length 449
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1u16A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1u16A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1u16A02
3BHGA 4APBA 4FLCA 4EEIA 1DOFA 3GZHA 2QGAB 1FURA 2OHYA 3E04A 4C5SA 4V2QA 2PFMA 4BABA 1GK2A 4V2RA 2O7BA 4NSLA 2E9FA 1TJ7A 2RJSA 3R6YA 1U16A 3R6QA 1T6JA 3KDYA 1KQ7A 2HVGA 3OCFA 1GKMA 5HW2A 5F92A 5D6BA 1FUOA 3NZ4A 2J91A 1DCNA 1YFEA 1AUWA 2YIIA 3RD8A 1HY1A 1K7WA 4FFXA 4HGVA 5EYVA 2FUSA 1K62A 4C6GA 1TJWA 3R6VA 1Q5NA 3C8TA 3KDZA 1TJUA 2O7DA 4EFCA 1TJVA 1GKJA 1T6PA 1FUPA 3GTDA 3TV2A 1Y2MA 4APAA 1B8FA 3CZOA 4ADMA 4CQ5A 1GK3A 2QVEA 2O7FA 3OCEA 2PTRA 1RE5A 1XWOA 1EB4A 1YFMA 2NYNA 2O7EA 1U15A 1HY0A 4C5UA 4C5RA 1C3UA 1VDKA 3RRPA 2RJRA 4ADLA 2O78A 1I0AA 3UNVA 2NYFA 5EYTA 1JSWA 2VD6A 4MX2A 2X75A 3NO9A 3QBPA 1C3CA 1YISA 2O6YA 4NLEA 4BAAA 5F91A 1W27A 2PTQA 2PTSA 1J3UA 1FUQA
chains in the Genus database with same CATH superfamily
3BHGA 4MWOA 4APBA 4FLCA 2FENA 4EEIA 1DOFA 3GZHA 2QGAB 3F4SA 2VL7A 1FURA 2JARA 4NFLA 3E04A 2OHYA 4C5SA 3BWVA 2PFMA 4V2QA 4BABA 1GK2A 4V2RA 2O7BA 4NSLA 2E9FA 1TJ7A 4L57A 1MH9A 2RJSA 3R6YA 1U16A 3R6QA 3U13A 1T6JA 4WNLA 1Z4IA 3KDYA 1KQ7A 1XMCA 2HVGA 3OCFA 1U0LA 2JAOA 1GKMA 5HW2A 2YV5A 5F92A 5D6BA 2FELA 5H8WA 4YIKA 1FUOA 3NZ4A 2J91A 1Q92A 1DCNA 1YFEA 1AUWA 2YIIA 3RD8A 1HY1A 1Z4JA 3CRVA 2D28C 1K7WA 1Q91A 4YIHA 4FFXA 4HGVA 5EYVA 1Z4QA 2FUSA 1K62A 4C6GA 1TJWA 3R6VA 1Q5NA 1Z4MA 3C8TA 3KDZA 4E88A 1TJUA 1XL7A 2O7DA 1Z4PX 4EFCA 5M0IA 1TJVA 1IW7D 3U19A 1XLYA 1GKJA 1T6PA 4IQJM 1FUPA 1T9HA 2VSFA 1XMDA 3F4TA 3GTDA 3TV2A 1XL8A 1Y2MA 4APAA 1Z4LA 4A15A 1B8FA 3CZOA 4ADMA 3CI0K 4CQ5A 1GK3A 4L6AA 2QVEA 2O7FA 3OCEA 2PTRA 1RE5A 1XWOA 1YFMA 1EB4A 2NYNA 1Z4KA 2JAWA 2O7EA 1U15A 1HY0A 4C5UA 2JAUA 4C5RA 1C3UA 4MUMA 1VDKA 3RRPA 2RJRA 5M0JA 4ADLA 2O78A 1I0AA 3UNVA 2NYFA 3CRW1 5EYTA 1JSWA 2VD6A 4L6CA 4MX2A 2X75A 2RCNA 3NO9A 3QBPA 1C3CA 1YISA 2O6YA 4NLEA 4BAAA 5F91A 2D27A 2I7DA 1W27A 2PTQA 3F4RA 2PTSA 1J3UA 1FUQA
chains in the Genus database with same CATH topology
3BHGA 4APBA 4FLCA 4EEIA 1DOFA 3GZHA 2QGAB 1FURA 2OHYA 3E04A 4C5SA 4V2QA 2PFMA 4BABA 1GK2A 4V2RA 2O7BA 4NSLA 2E9FA 1TJ7A 2RJSA 3R6YA 1U16A 3R6QA 1T6JA 3KDYA 1KQ7A 2HVGA 3OCFA 1GKMA 5HW2A 5F92A 5D6BA 1FUOA 3NZ4A 2J91A 1DCNA 1YFEA 1AUWA 2YIIA 3RD8A 1HY1A 1K7WA 4FFXA 4HGVA 5EYVA 2FUSA 1K62A 4C6GA 1TJWA 3R6VA 1Q5NA 3C8TA 3KDZA 1TJUA 2O7DA 4EFCA 1TJVA 1GKJA 1T6PA 1FUPA 3GTDA 3TV2A 1Y2MA 4APAA 1B8FA 3CZOA 4ADMA 4CQ5A 1GK3A 2QVEA 2O7FA 3OCEA 2PTRA 1RE5A 1XWOA 1EB4A 1YFMA 2NYNA 2O7EA 1U15A 1HY0A 4C5UA 4C5RA 1C3UA 1VDKA 3RRPA 2RJRA 4ADLA 2O78A 1I0AA 3UNVA 2NYFA 5EYTA 1JSWA 2VD6A 4MX2A 2X75A 3NO9A 3QBPA 1C3CA 1YISA 2O6YA 4NLEA 4BAAA 5F91A 1W27A 2PTQA 2PTSA 1J3UA 1FUQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BHG A;  4APB A;  4FLC A;  4EEI A;  1DOF A;  3GZH A;  2QGA B;  1FUR A;  2OHY A;  3E04 A;  4C5S A;  4V2Q A;  2PFM A;  4BAB A;  1GK2 A;  4V2R A;  2O7B A;  4NSL A;  2E9F A;  1TJ7 A;  2RJS A;  3R6Y A;  1U16 A;  3R6Q A;  1T6J A;  3KDY A;  1KQ7 A;  2HVG A;  3OCF A;  1GKM A;  5HW2 A;  5F92 A;  5D6B A;  1FUO A;  3NZ4 A;  2J91 A;  1DCN A;  1YFE A;  1AUW A;  2YII A;  3RD8 A;  1HY1 A;  1K7W A;  4FFX A;  4HGV A;  5EYV A;  2FUS A;  1K62 A;  4C6G A;  1TJW A;  3R6V A;  1Q5N A;  3C8T A;  3KDZ A;  1TJU A;  2O7D A;  4EFC A;  1TJV A;  1GKJ A;  1T6P A;  1FUP A;  3GTD A;  3TV2 A;  1Y2M A;  4APA A;  1B8F A;  3CZO A;  4ADM A;  4CQ5 A;  1GK3 A;  2QVE A;  2O7F A;  3OCE A;  2PTR A;  1RE5 A;  1XWO A;  1EB4 A;  1YFM A;  2NYN A;  2O7E A;  1U15 A;  1HY0 A;  4C5U A;  4C5R A;  1C3U A;  1VDK A;  3RRP A;  2RJR A;  4ADL A;  2O78 A;  1I0A A;  3UNV A;  2NYF A;  5EYT A;  1JSW A;  2VD6 A;  4MX2 A;  2X75 A;  3NO9 A;  3QBP A;  1C3C A;  1YIS A;  2O6Y A;  4NLE A;  4BAA A;  5F91 A;  1W27 A;  2PTQ A;  2PTS A;  1J3U A;  1FUQ A; 
#chains in the Genus database with same CATH topology
 3BHG A;  4MWO A;  4APB A;  4FLC A;  2FEN A;  4EEI A;  1DOF A;  3GZH A;  2QGA B;  3F4S A;  2VL7 A;  1FUR A;  2JAR A;  4NFL A;  3E04 A;  2OHY A;  4C5S A;  3BWV A;  2PFM A;  4V2Q A;  4BAB A;  1GK2 A;  4V2R A;  2O7B A;  4NSL A;  2E9F A;  1TJ7 A;  4L57 A;  1MH9 A;  2RJS A;  3R6Y A;  1U16 A;  3R6Q A;  3U13 A;  1T6J A;  4WNL A;  1Z4I A;  3KDY A;  1KQ7 A;  1XMC A;  2HVG A;  3OCF A;  1U0L A;  2JAO A;  1GKM A;  5HW2 A;  2YV5 A;  5F92 A;  5D6B A;  2FEL A;  5H8W A;  4YIK A;  1FUO A;  3NZ4 A;  2J91 A;  1Q92 A;  1DCN A;  1YFE A;  1AUW A;  2YII A;  3RD8 A;  1HY1 A;  1Z4J A;  3CRV A;  2D28 C;  1K7W A;  1Q91 A;  4YIH A;  4FFX A;  4HGV A;  5EYV A;  1Z4Q A;  2FUS A;  1K62 A;  4C6G A;  1TJW A;  3R6V A;  1Q5N A;  1Z4M A;  3C8T A;  3KDZ A;  4E88 A;  1TJU A;  1XL7 A;  2O7D A;  1Z4P X;  4EFC A;  5M0I A;  1TJV A;  1IW7 D;  3U19 A;  1XLY A;  1GKJ A;  1T6P A;  4IQJ M;  1FUP A;  1T9H A;  2VSF A;  1XMD A;  3F4T A;  3GTD A;  3TV2 A;  1XL8 A;  1Y2M A;  4APA A;  1Z4L A;  4A15 A;  1B8F A;  3CZO A;  4ADM A;  3CI0 K;  4CQ5 A;  1GK3 A;  4L6A A;  2QVE A;  2O7F A;  3OCE A;  2PTR A;  1RE5 A;  1XWO A;  1YFM A;  1EB4 A;  2NYN A;  1Z4K A;  2JAW A;  2O7E A;  1U15 A;  1HY0 A;  4C5U A;  2JAU A;  4C5R A;  1C3U A;  4MUM A;  1VDK A;  3RRP A;  2RJR A;  5M0J A;  4ADL A;  2O78 A;  1I0A A;  3UNV A;  2NYF A;  3CRW 1;  5EYT A;  1JSW A;  2VD6 A;  4L6C A;  4MX2 A;  2X75 A;  2RCN A;  3NO9 A;  3QBP A;  1C3C A;  1YIS A;  2O6Y A;  4NLE A;  4BAA A;  5F91 A;  2D27 A;  2I7D A;  1W27 A;  2PTQ A;  3F4R A;  2PTS A;  1J3U A;  1FUQ A; 
#chains in the Genus database with same CATH homology
 3BHG A;  4APB A;  4FLC A;  4EEI A;  1DOF A;  3GZH A;  2QGA B;  1FUR A;  2OHY A;  3E04 A;  4C5S A;  4V2Q A;  2PFM A;  4BAB A;  1GK2 A;  4V2R A;  2O7B A;  4NSL A;  2E9F A;  1TJ7 A;  2RJS A;  3R6Y A;  1U16 A;  3R6Q A;  1T6J A;  3KDY A;  1KQ7 A;  2HVG A;  3OCF A;  1GKM A;  5HW2 A;  5F92 A;  5D6B A;  1FUO A;  3NZ4 A;  2J91 A;  1DCN A;  1YFE A;  1AUW A;  2YII A;  3RD8 A;  1HY1 A;  1K7W A;  4FFX A;  4HGV A;  5EYV A;  2FUS A;  1K62 A;  4C6G A;  1TJW A;  3R6V A;  1Q5N A;  3C8T A;  3KDZ A;  1TJU A;  2O7D A;  4EFC A;  1TJV A;  1GKJ A;  1T6P A;  1FUP A;  3GTD A;  3TV2 A;  1Y2M A;  4APA A;  1B8F A;  3CZO A;  4ADM A;  4CQ5 A;  1GK3 A;  2QVE A;  2O7F A;  3OCE A;  2PTR A;  1RE5 A;  1XWO A;  1EB4 A;  1YFM A;  2NYN A;  2O7E A;  1U15 A;  1HY0 A;  4C5U A;  4C5R A;  1C3U A;  1VDK A;  3RRP A;  2RJR A;  4ADL A;  2O78 A;  1I0A A;  3UNV A;  2NYF A;  5EYT A;  1JSW A;  2VD6 A;  4MX2 A;  2X75 A;  3NO9 A;  3QBP A;  1C3C A;  1YIS A;  2O6Y A;  4NLE A;  4BAA A;  5F91 A;  1W27 A;  2PTQ A;  2PTS A;  1J3U A;  1FUQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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