1U16A

Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm) in complex with sulfate
Total Genus 186
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
449
structure length
449
Chain Sequence
STDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
source organism Anas platyrhynchos
publication title A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
pubmed doi rcsb
molecule keywords Delta crystallin I
total genus 186
structure length 449
sequence length 449
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1u16A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1u16A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1u16A02
1FUPA 2J91A 1Y2MA 1C3UA 2PTQA 2NYNA 4CQ5A 1AUWA 3R6VA 3UNVA 1JSWA 1K7WA 4ADMA 4MX2A 1YFMA 3E04A 1GKJA 1B8FA 2E9FA 4C5UA 1U16A 4FLCA 1TJVA 3KDYA 3NO9A 3CZOA 2HVGA 2RJSA 3C8TA 2O7BA 4HGVA 1TJUA 3QBPA 1W27A 4APBA 1T6JA 3GZHA 1C3CA 4ADLA 3GTDA 5EYVA 1I0AA 1J3UA 4V2QA 1U15A 2PTRA 2O7FA 3OCEA 1DCNA 3R6YA 1Q5NA 2O7DA 1TJWA 4BABA 1GK3A 1GKMA 5HW2A 1TJ7A 2YIIA 3OCFA 5F92A 2O78A 1FUQA 2FUSA 1T6PA 3KDZA 2OHYA 3NZ4A 4NLEA 2PFMA 1EB4A 1DOFA 1GK2A 1HY0A 4NSLA 1FUOA 4C5RA 2PTSA 3BHGA 4FFXA 1KQ7A 2O7EA 2VD6A 5D6BA 1K62A 5EYTA 1HY1A 2X75A 4V2RA 3R6QA 3RD8A 1FURA 1RE5A 2QVEA 4C5SA 1XWOA 2NYFA 1YISA 4C6GA 1VDKA 2O6YA 4BAAA 4EFCA 2RJRA 1YFEA 4EEIA 3TV2A 3RRPA 4APAA 2QGAB 5F91A
chains in the Genus database with same CATH superfamily
1FUPA 3U19A 4NFLA 2RCNA 1T9HA 4A15A 2J91A 1XMCA 3CI0K 1Y2MA 1C3UA 2PTQA 2NYNA 4CQ5A 1AUWA 4L6AA 3R6VA 3UNVA 1Z4IA 1JSWA 1K7WA 1Z4QA 4ADMA 4MX2A 1YFMA 3E04A 4IQJM 1GKJA 1B8FA 2E9FA 4C5UA 1U16A 3F4RA 4FLCA 1TJVA 3KDYA 3NO9A 3CZOA 2HVGA 4L57A 2RJSA 4MWOA 3C8TA 2O7BA 1MH9A 2YV5A 4HGVA 3CRVA 1TJUA 3QBPA 2D28C 1W27A 4APBA 1T6JA 5H8WA 4MUMA 3GZHA 2FELA 1C3CA 4YIHA 5M0IA 4ADLA 1Z4PX 3GTDA 5EYVA 1I0AA 1J3UA 2FENA 4V2QA 1U15A 2PTRA 2O7FA 3OCEA 1DCNA 3R6YA 1Q5NA 2O7DA 1TJWA 1Z4JA 4BABA 1GK3A 1GKMA 4E88A 3BWVA 1XL8A 5M0JA 4YIKA 1Z4MA 4WNLA 5HW2A 1Z4LA 1TJ7A 2YIIA 1XMDA 3OCFA 1XLYA 5F92A 2O78A 1FUQA 2FUSA 1T6PA 3KDZA 3F4TA 2OHYA 3NZ4A 4NLEA 2PFMA 1EB4A 1DOFA 4L6CA 1Q92A 3CRW1 1GK2A 1HY0A 4NSLA 1FUOA 4C5RA 2PTSA 3BHGA 4FFXA 1KQ7A 2O7EA 2VD6A 2I7DA 5D6BA 1K62A 5EYTA 1XL7A 1HY1A 2X75A 4V2RA 3R6QA 2D27A 3RD8A 1Q91A 2VL7A 2JAWA 1FURA 1RE5A 2QVEA 4C5SA 1XWOA 2NYFA 1YISA 4C6GA 1VDKA 2O6YA 4BAAA 1IW7D 1Z4KA 2JAOA 4EFCA 2RJRA 1U0LA 1YFEA 4EEIA 3TV2A 2JAUA 3RRPA 3U13A 2JARA 4APAA 3F4SA 2QGAB 5F91A 2VSFA
chains in the Genus database with same CATH topology
1FUPA 2J91A 1Y2MA 1C3UA 2PTQA 2NYNA 4CQ5A 1AUWA 3R6VA 3UNVA 1JSWA 1K7WA 4ADMA 4MX2A 1YFMA 3E04A 1GKJA 1B8FA 2E9FA 4C5UA 1U16A 4FLCA 1TJVA 3KDYA 3NO9A 3CZOA 2HVGA 2RJSA 3C8TA 2O7BA 4HGVA 1TJUA 3QBPA 1W27A 4APBA 1T6JA 3GZHA 1C3CA 4ADLA 3GTDA 5EYVA 1I0AA 1J3UA 4V2QA 1U15A 2PTRA 2O7FA 3OCEA 1DCNA 3R6YA 1Q5NA 2O7DA 1TJWA 4BABA 1GK3A 1GKMA 5HW2A 1TJ7A 2YIIA 3OCFA 5F92A 2O78A 1FUQA 2FUSA 1T6PA 3KDZA 2OHYA 3NZ4A 4NLEA 2PFMA 1EB4A 1DOFA 1GK2A 1HY0A 4NSLA 1FUOA 4C5RA 2PTSA 3BHGA 4FFXA 1KQ7A 2O7EA 2VD6A 5D6BA 1K62A 5EYTA 1HY1A 2X75A 4V2RA 3R6QA 3RD8A 1FURA 1RE5A 2QVEA 4C5SA 1XWOA 2NYFA 1YISA 4C6GA 1VDKA 2O6YA 4BAAA 4EFCA 2RJRA 1YFEA 4EEIA 3TV2A 3RRPA 4APAA 2QGAB 5F91A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FUP A;  2J91 A;  1Y2M A;  1C3U A;  2PTQ A;  2NYN A;  4CQ5 A;  1AUW A;  3R6V A;  3UNV A;  1JSW A;  1K7W A;  4ADM A;  4MX2 A;  1YFM A;  3E04 A;  1GKJ A;  1B8F A;  2E9F A;  4C5U A;  1U16 A;  4FLC A;  1TJV A;  3KDY A;  3NO9 A;  3CZO A;  2HVG A;  2RJS A;  3C8T A;  2O7B A;  4HGV A;  1TJU A;  3QBP A;  1W27 A;  4APB A;  1T6J A;  3GZH A;  1C3C A;  4ADL A;  3GTD A;  5EYV A;  1I0A A;  1J3U A;  4V2Q A;  1U15 A;  2PTR A;  2O7F A;  3OCE A;  1DCN A;  3R6Y A;  1Q5N A;  2O7D A;  1TJW A;  4BAB A;  1GK3 A;  1GKM A;  5HW2 A;  1TJ7 A;  2YII A;  3OCF A;  5F92 A;  2O78 A;  1FUQ A;  2FUS A;  1T6P A;  3KDZ A;  2OHY A;  3NZ4 A;  4NLE A;  2PFM A;  1EB4 A;  1DOF A;  1GK2 A;  1HY0 A;  4NSL A;  1FUO A;  4C5R A;  2PTS A;  3BHG A;  4FFX A;  1KQ7 A;  2O7E A;  2VD6 A;  5D6B A;  1K62 A;  5EYT A;  1HY1 A;  2X75 A;  4V2R A;  3R6Q A;  3RD8 A;  1FUR A;  1RE5 A;  2QVE A;  4C5S A;  1XWO A;  2NYF A;  1YIS A;  4C6G A;  1VDK A;  2O6Y A;  4BAA A;  4EFC A;  2RJR A;  1YFE A;  4EEI A;  3TV2 A;  3RRP A;  4APA A;  2QGA B;  5F91 A; 
#chains in the Genus database with same CATH topology
 1FUP A;  3U19 A;  4NFL A;  2RCN A;  1T9H A;  4A15 A;  2J91 A;  1XMC A;  3CI0 K;  1Y2M A;  1C3U A;  2PTQ A;  2NYN A;  4CQ5 A;  1AUW A;  4L6A A;  3R6V A;  3UNV A;  1Z4I A;  1JSW A;  1K7W A;  1Z4Q A;  4ADM A;  4MX2 A;  1YFM A;  3E04 A;  4IQJ M;  1GKJ A;  1B8F A;  2E9F A;  4C5U A;  1U16 A;  3F4R A;  4FLC A;  1TJV A;  3KDY A;  3NO9 A;  3CZO A;  2HVG A;  4L57 A;  2RJS A;  4MWO A;  3C8T A;  2O7B A;  1MH9 A;  2YV5 A;  4HGV A;  3CRV A;  1TJU A;  3QBP A;  2D28 C;  1W27 A;  4APB A;  1T6J A;  5H8W A;  4MUM A;  3GZH A;  2FEL A;  1C3C A;  4YIH A;  5M0I A;  4ADL A;  1Z4P X;  3GTD A;  5EYV A;  1I0A A;  1J3U A;  2FEN A;  4V2Q A;  1U15 A;  2PTR A;  2O7F A;  3OCE A;  1DCN A;  3R6Y A;  1Q5N A;  2O7D A;  1TJW A;  1Z4J A;  4BAB A;  1GK3 A;  1GKM A;  4E88 A;  3BWV A;  1XL8 A;  5M0J A;  4YIK A;  1Z4M A;  4WNL A;  5HW2 A;  1Z4L A;  1TJ7 A;  2YII A;  1XMD A;  3OCF A;  1XLY A;  5F92 A;  2O78 A;  1FUQ A;  2FUS A;  1T6P A;  3KDZ A;  3F4T A;  2OHY A;  3NZ4 A;  4NLE A;  2PFM A;  1EB4 A;  1DOF A;  4L6C A;  1Q92 A;  3CRW 1;  1GK2 A;  1HY0 A;  4NSL A;  1FUO A;  4C5R A;  2PTS A;  3BHG A;  4FFX A;  1KQ7 A;  2O7E A;  2VD6 A;  2I7D A;  5D6B A;  1K62 A;  5EYT A;  1XL7 A;  1HY1 A;  2X75 A;  4V2R A;  3R6Q A;  2D27 A;  3RD8 A;  1Q91 A;  2VL7 A;  2JAW A;  1FUR A;  1RE5 A;  2QVE A;  4C5S A;  1XWO A;  2NYF A;  1YIS A;  4C6G A;  1VDK A;  2O6Y A;  4BAA A;  1IW7 D;  1Z4K A;  2JAO A;  4EFC A;  2RJR A;  1U0L A;  1YFE A;  4EEI A;  3TV2 A;  2JAU A;  3RRP A;  3U13 A;  2JAR A;  4APA A;  3F4S A;  2QGA B;  5F91 A;  2VSF A; 
#chains in the Genus database with same CATH homology
 1FUP A;  2J91 A;  1Y2M A;  1C3U A;  2PTQ A;  2NYN A;  4CQ5 A;  1AUW A;  3R6V A;  3UNV A;  1JSW A;  1K7W A;  4ADM A;  4MX2 A;  1YFM A;  3E04 A;  1GKJ A;  1B8F A;  2E9F A;  4C5U A;  1U16 A;  4FLC A;  1TJV A;  3KDY A;  3NO9 A;  3CZO A;  2HVG A;  2RJS A;  3C8T A;  2O7B A;  4HGV A;  1TJU A;  3QBP A;  1W27 A;  4APB A;  1T6J A;  3GZH A;  1C3C A;  4ADL A;  3GTD A;  5EYV A;  1I0A A;  1J3U A;  4V2Q A;  1U15 A;  2PTR A;  2O7F A;  3OCE A;  1DCN A;  3R6Y A;  1Q5N A;  2O7D A;  1TJW A;  4BAB A;  1GK3 A;  1GKM A;  5HW2 A;  1TJ7 A;  2YII A;  3OCF A;  5F92 A;  2O78 A;  1FUQ A;  2FUS A;  1T6P A;  3KDZ A;  2OHY A;  3NZ4 A;  4NLE A;  2PFM A;  1EB4 A;  1DOF A;  1GK2 A;  1HY0 A;  4NSL A;  1FUO A;  4C5R A;  2PTS A;  3BHG A;  4FFX A;  1KQ7 A;  2O7E A;  2VD6 A;  5D6B A;  1K62 A;  5EYT A;  1HY1 A;  2X75 A;  4V2R A;  3R6Q A;  3RD8 A;  1FUR A;  1RE5 A;  2QVE A;  4C5S A;  1XWO A;  2NYF A;  1YIS A;  4C6G A;  1VDK A;  2O6Y A;  4BAA A;  4EFC A;  2RJR A;  1YFE A;  4EEI A;  3TV2 A;  3RRP A;  4APA A;  2QGA B;  5F91 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...