1U16A

Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm) in complex with sulfate
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
449
structure length
449
Chain Sequence
STDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Delta crystallin I
publication title A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Lyase
total genus 186
structure length 449
sequence length 449
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1u16A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1u16A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1u16A02
2PTRA 3OCEA 4C5RA 5D6BA 1Q5NA 1U15A 5F92A 5F91A 1TJ7A 2O7EA 1RE5A 4ADMA 4EEIA 1W27A 2O7BA 1C3UA 3C8TA 4C5SA 4HGVA 3R6YA 4NSLA 1GKJA 4FLCA 4ADLA 2RJRA 1Y2MA 1FUOA 3RRPA 2X75A 1FUQA 4C6GA 4BAAA 1HY1A 2HVGA 2J91A 2PTSA 2E9FA 3TV2A 1DOFA 3CZOA 1KQ7A 3NO9A 1K62A 1XWOA 3R6QA 2FUSA 4APAA 1TJWA 1HY0A 2PFMA 1J3UA 1GK3A 1B8FA 2RJSA 2O78A 1FUPA 1DCNA 3OCFA 2O7FA 1C3CA 3GZHA 2NYFA 1T6PA 2NYNA 4C5UA 4CQ5A 1YFEA 2VD6A 1YISA 4BABA 1VDKA 1FURA 4FFXA 4NLEA 1TJVA 3BHGA 1JSWA 1U16A 1YFMA 4V2RA 1GK2A 1GKMA 5EYVA 3NZ4A 2YIIA 2QVEA 3E04A 4MX2A 4APBA 1AUWA 4EFCA 1I0AA 3KDZA 1EB4A 2O7DA 3QBPA 2PTQA 3RD8A 3R6VA 1T6JA 5EYTA 5HW2A 2OHYA 4V2QA 3UNVA 2O6YA 3GTDA 1K7WA 1TJUA 2QGAB 3KDYA
chains in the Genus database with same CATH superfamily
5M0IA 2PTRA 3OCEA 2VL7A 4NFLA 4C5RA 5D6BA 3F4SA 1Q5NA 1U15A 5F92A 5F91A 1TJ7A 4E88A 2O7EA 1RE5A 4ADMA 4EEIA 1W27A 2O7BA 1C3UA 3C8TA 4C5SA 4HGVA 3U13A 1XMCA 1Z4JA 2YV5A 1XL8A 3R6YA 4NSLA 1GKJA 4FLCA 5H8WA 1XL7A 4ADLA 4L57A 2VSFA 2RJRA 1Y2MA 4WNLA 2RCNA 1Q91A 1FUOA 3RRPA 1Z4KA 2X75A 1FUQA 1U0LA 4C6GA 2JAOA 4BAAA 1Z4MA 1HY1A 3CRW1 2HVGA 2J91A 4L6CA 4MWOA 2PTSA 2E9FA 3TV2A 1DOFA 4YIHA 3CZOA 1KQ7A 3NO9A 1K62A 1XWOA 2I7DA 3R6QA 3CI0K 2FUSA 4MUMA 4APAA 2FELA 3BWVA 1TJWA 1HY0A 1Z4LA 2PFMA 1J3UA 1GK3A 2JAWA 1B8FA 2RJSA 3CRVA 2O78A 1FUPA 1DCNA 3OCFA 2O7FA 1IW7D 4A15A 1C3CA 3GZHA 3F4TA 2NYFA 1T6PA 2NYNA 4C5UA 4CQ5A 1YFEA 2VD6A 1XMDA 1YISA 4BABA 1VDKA 3F4RA 1MH9A 1FURA 1Z4IA 4FFXA 4NLEA 4YIKA 1T9HA 1TJVA 3BHGA 1JSWA 1U16A 1Z4QA 1YFMA 5M0JA 1Z4PX 2FENA 4V2RA 1GK2A 4IQJM 1GKMA 5EYVA 3NZ4A 2YIIA 2D27A 2D28C 2QVEA 3E04A 2JAUA 4MX2A 4APBA 1AUWA 4EFCA 1I0AA 3KDZA 1EB4A 2O7DA 3QBPA 1XLYA 2PTQA 3RD8A 2JARA 3R6VA 1T6JA 5HW2A 5EYTA 2OHYA 1Q92A 4V2QA 4L6AA 3UNVA 2O6YA 3GTDA 1K7WA 1TJUA 3U19A 2QGAB 3KDYA
chains in the Genus database with same CATH topology
2PTRA 3OCEA 4C5RA 5D6BA 1Q5NA 1U15A 5F92A 5F91A 1TJ7A 2O7EA 1RE5A 4ADMA 4EEIA 1W27A 2O7BA 1C3UA 3C8TA 4C5SA 4HGVA 3R6YA 4NSLA 1GKJA 4FLCA 4ADLA 2RJRA 1Y2MA 1FUOA 3RRPA 2X75A 1FUQA 4C6GA 4BAAA 1HY1A 2HVGA 2J91A 2PTSA 2E9FA 3TV2A 1DOFA 3CZOA 1KQ7A 3NO9A 1K62A 1XWOA 3R6QA 2FUSA 4APAA 1TJWA 1HY0A 2PFMA 1J3UA 1GK3A 1B8FA 2RJSA 2O78A 1FUPA 1DCNA 3OCFA 2O7FA 1C3CA 3GZHA 2NYFA 1T6PA 2NYNA 4C5UA 4CQ5A 1YFEA 2VD6A 1YISA 4BABA 1VDKA 1FURA 4FFXA 4NLEA 1TJVA 3BHGA 1JSWA 1U16A 1YFMA 4V2RA 1GK2A 1GKMA 5EYVA 3NZ4A 2YIIA 2QVEA 3E04A 4MX2A 4APBA 1AUWA 4EFCA 1I0AA 3KDZA 1EB4A 2O7DA 3QBPA 2PTQA 3RD8A 3R6VA 1T6JA 5EYTA 5HW2A 2OHYA 4V2QA 3UNVA 2O6YA 3GTDA 1K7WA 1TJUA 2QGAB 3KDYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PTR A;  3OCE A;  4C5R A;  5D6B A;  1Q5N A;  1U15 A;  5F92 A;  5F91 A;  1TJ7 A;  2O7E A;  1RE5 A;  4ADM A;  4EEI A;  1W27 A;  2O7B A;  1C3U A;  3C8T A;  4C5S A;  4HGV A;  3R6Y A;  4NSL A;  1GKJ A;  4FLC A;  4ADL A;  2RJR A;  1Y2M A;  1FUO A;  3RRP A;  2X75 A;  1FUQ A;  4C6G A;  4BAA A;  1HY1 A;  2HVG A;  2J91 A;  2PTS A;  2E9F A;  3TV2 A;  1DOF A;  3CZO A;  1KQ7 A;  3NO9 A;  1K62 A;  1XWO A;  3R6Q A;  2FUS A;  4APA A;  1TJW A;  1HY0 A;  2PFM A;  1J3U A;  1GK3 A;  1B8F A;  2RJS A;  2O78 A;  1FUP A;  1DCN A;  3OCF A;  2O7F A;  1C3C A;  3GZH A;  2NYF A;  1T6P A;  2NYN A;  4C5U A;  4CQ5 A;  1YFE A;  2VD6 A;  1YIS A;  4BAB A;  1VDK A;  1FUR A;  4FFX A;  4NLE A;  1TJV A;  3BHG A;  1JSW A;  1U16 A;  1YFM A;  4V2R A;  1GK2 A;  1GKM A;  5EYV A;  3NZ4 A;  2YII A;  2QVE A;  3E04 A;  4MX2 A;  4APB A;  1AUW A;  4EFC A;  1I0A A;  3KDZ A;  1EB4 A;  2O7D A;  3QBP A;  2PTQ A;  3RD8 A;  3R6V A;  1T6J A;  5EYT A;  5HW2 A;  2OHY A;  4V2Q A;  3UNV A;  2O6Y A;  3GTD A;  1K7W A;  1TJU A;  2QGA B;  3KDY A; 
#chains in the Genus database with same CATH topology
 5M0I A;  2PTR A;  3OCE A;  2VL7 A;  4NFL A;  4C5R A;  5D6B A;  3F4S A;  1Q5N A;  1U15 A;  5F92 A;  5F91 A;  1TJ7 A;  4E88 A;  2O7E A;  1RE5 A;  4ADM A;  4EEI A;  1W27 A;  2O7B A;  1C3U A;  3C8T A;  4C5S A;  4HGV A;  3U13 A;  1XMC A;  1Z4J A;  2YV5 A;  1XL8 A;  3R6Y A;  4NSL A;  1GKJ A;  4FLC A;  5H8W A;  1XL7 A;  4ADL A;  4L57 A;  2VSF A;  2RJR A;  1Y2M A;  4WNL A;  2RCN A;  1Q91 A;  1FUO A;  3RRP A;  1Z4K A;  2X75 A;  1FUQ A;  1U0L A;  4C6G A;  2JAO A;  4BAA A;  1Z4M A;  1HY1 A;  3CRW 1;  2HVG A;  2J91 A;  4L6C A;  4MWO A;  2PTS A;  2E9F A;  3TV2 A;  1DOF A;  4YIH A;  3CZO A;  1KQ7 A;  3NO9 A;  1K62 A;  1XWO A;  2I7D A;  3R6Q A;  3CI0 K;  2FUS A;  4MUM A;  4APA A;  2FEL A;  3BWV A;  1TJW A;  1HY0 A;  1Z4L A;  2PFM A;  1J3U A;  1GK3 A;  2JAW A;  1B8F A;  2RJS A;  3CRV A;  2O78 A;  1FUP A;  1DCN A;  3OCF A;  2O7F A;  1IW7 D;  4A15 A;  1C3C A;  3GZH A;  3F4T A;  2NYF A;  1T6P A;  2NYN A;  4C5U A;  4CQ5 A;  1YFE A;  2VD6 A;  1XMD A;  1YIS A;  4BAB A;  1VDK A;  3F4R A;  1MH9 A;  1FUR A;  1Z4I A;  4FFX A;  4NLE A;  4YIK A;  1T9H A;  1TJV A;  3BHG A;  1JSW A;  1U16 A;  1Z4Q A;  1YFM A;  5M0J A;  1Z4P X;  2FEN A;  4V2R A;  1GK2 A;  4IQJ M;  1GKM A;  5EYV A;  3NZ4 A;  2YII A;  2D27 A;  2D28 C;  2QVE A;  3E04 A;  2JAU A;  4MX2 A;  4APB A;  1AUW A;  4EFC A;  1I0A A;  3KDZ A;  1EB4 A;  2O7D A;  3QBP A;  1XLY A;  2PTQ A;  3RD8 A;  2JAR A;  3R6V A;  1T6J A;  5HW2 A;  5EYT A;  2OHY A;  1Q92 A;  4V2Q A;  4L6A A;  3UNV A;  2O6Y A;  3GTD A;  1K7W A;  1TJU A;  3U19 A;  2QGA B;  3KDY A; 
#chains in the Genus database with same CATH homology
 2PTR A;  3OCE A;  4C5R A;  5D6B A;  1Q5N A;  1U15 A;  5F92 A;  5F91 A;  1TJ7 A;  2O7E A;  1RE5 A;  4ADM A;  4EEI A;  1W27 A;  2O7B A;  1C3U A;  3C8T A;  4C5S A;  4HGV A;  3R6Y A;  4NSL A;  1GKJ A;  4FLC A;  4ADL A;  2RJR A;  1Y2M A;  1FUO A;  3RRP A;  2X75 A;  1FUQ A;  4C6G A;  4BAA A;  1HY1 A;  2HVG A;  2J91 A;  2PTS A;  2E9F A;  3TV2 A;  1DOF A;  3CZO A;  1KQ7 A;  3NO9 A;  1K62 A;  1XWO A;  3R6Q A;  2FUS A;  4APA A;  1TJW A;  1HY0 A;  2PFM A;  1J3U A;  1GK3 A;  1B8F A;  2RJS A;  2O78 A;  1FUP A;  1DCN A;  3OCF A;  2O7F A;  1C3C A;  3GZH A;  2NYF A;  1T6P A;  2NYN A;  4C5U A;  4CQ5 A;  1YFE A;  2VD6 A;  1YIS A;  4BAB A;  1VDK A;  1FUR A;  4FFX A;  4NLE A;  1TJV A;  3BHG A;  1JSW A;  1U16 A;  1YFM A;  4V2R A;  1GK2 A;  1GKM A;  5EYV A;  3NZ4 A;  2YII A;  2QVE A;  3E04 A;  4MX2 A;  4APB A;  1AUW A;  4EFC A;  1I0A A;  3KDZ A;  1EB4 A;  2O7D A;  3QBP A;  2PTQ A;  3RD8 A;  3R6V A;  1T6J A;  5EYT A;  5HW2 A;  2OHY A;  4V2Q A;  3UNV A;  2O6Y A;  3GTD A;  1K7W A;  1TJU A;  2QGA B;  3KDY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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