1U16A

Crystal structure of a duck-delta-crystallin-1 double loop mutant (dlm) in complex with sulfate
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
449
structure length
449
Chain Sequence
b'STDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Delta crystallin I
publication title A duck delta1 crystallin double loop mutant provides insight into residues important for argininosuccinate lyase activity.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Lyase
total genus 186
structure length 449
sequence length 449
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1u16A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1u16A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1u16A02
1C3CA 3C8TA 4HGVA 1T6JA 4APBA 2VD6A 1U16A 1TJVA 3R6YA 2PTQA 4C6GA 1T6PA 2HVGA 5F91A 3NO9A 1Q5NA 1KQ7A 1GKJA 4BAAA 1GK2A 1W27A 3RD8A 4MX2A 1B8FA 1TJWA 1J3UA 1U15A 1FUPA 1FURA 5EYVA 1FUOA 3QBPA 3CZOA 1VDKA 1HY0A 3UNVA 2PTSA 2RJSA 1YFEA 3R6QA 4V2RA 1YFMA 2OHYA 2PFMA 2O6YA 2E9FA 1RE5A 1DCNA 4V2QA 2YIIA 1K62A 2QGAB 2O78A 2O7DA 2O7EA 2FUSA 3OCEA 4C5SA 4EEIA 2QVEA 4C5RA 1JSWA 4C5UA 1GKMA 1FUQA 2O7FA 1HY1A 3KDZA 2RJRA 4EFCA 1I0AA 1DOFA 1TJUA 5EYTA 3E04A 4NSLA 4ADLA 1TJ7A 2O7BA 1AUWA 2PTRA 4CQ5A 5D6BA 3NZ4A 3R6VA 5F92A 4ADMA 4NLEA 1GK3A 4FLCA 3BHGA 3KDYA 3GZHA 5HW2A 1Y2MA 1XWOA 1C3UA 3GTDA 1K7WA 3RRPA 3TV2A 1YISA 4BABA 4FFXA 4APAA 3OCFA 2J91A 2X75A 1EB4A 2NYFA 2NYNA
chains in the Genus database with same CATH superfamily
4YIHA 4WNLA 1C3CA 1U0LA 3C8TA 4NFLA 4HGVA 1XL7A 1T6JA 4APBA 1IW7D 1U16A 2VD6A 1TJVA 4E88A 3R6YA 4YIKA 3F4TA 2PTQA 4C6GA 1T6PA 2HVGA 5F91A 2I7DA 3NO9A 1KQ7A 1Q5NA 1GKJA 1XMDA 4BAAA 3CRW1 1GK2A 1W27A 5H8WA 3RD8A 4MX2A 1B8FA 1TJWA 1J3UA 1Z4JA 1U15A 1XLYA 4L57A 1FUPA 1FURA 5EYVA 1MH9A 1T9HA 1Z4QA 1FUOA 3QBPA 3CZOA 1VDKA 1HY0A 4MWOA 3UNVA 2PTSA 2RJSA 2D28C 1YFEA 2YV5A 3R6QA 4V2RA 2JAWA 2VL7A 4MUMA 1Z4IA 1YFMA 2OHYA 5M0IA 2PFMA 2O6YA 2E9FA 1RE5A 1DCNA 4V2QA 2YIIA 2FELA 1K62A 2QGAB 3BWVA 2D27A 1Q92A 2O78A 3U13A 2O7DA 2O7EA 2FUSA 3OCEA 3U19A 4C5SA 4EEIA 2QVEA 4C5RA 1JSWA 4C5UA 4A15A 1GKMA 1FUQA 2O7FA 1XL8A 1HY1A 3KDZA 2RJRA 4EFCA 3CRVA 1I0AA 1DOFA 1Q91A 1TJUA 5EYTA 1Z4MA 5M0JA 3E04A 2JAUA 4NSLA 2RCNA 4ADLA 1TJ7A 2O7BA 3F4SA 1AUWA 2PTRA 3CI0K 2JAOA 4CQ5A 3F4RA 5D6BA 3NZ4A 3R6VA 5F92A 4ADMA 4NLEA 1GK3A 4FLCA 3BHGA 3KDYA 3GZHA 2VSFA 4L6AA 5HW2A 1Z4LA 1Y2MA 2FENA 1XWOA 4IQJM 1Z4KA 1C3UA 3GTDA 1Z4PX 1K7WA 3RRPA 3TV2A 1YISA 4BABA 4L6CA 1XMCA 4FFXA 4APAA 3OCFA 2J91A 2X75A 2JARA 1EB4A 2NYFA 2NYNA
chains in the Genus database with same CATH topology
1C3CA 3C8TA 4HGVA 1T6JA 4APBA 2VD6A 1U16A 1TJVA 3R6YA 2PTQA 4C6GA 1T6PA 2HVGA 5F91A 3NO9A 1Q5NA 1KQ7A 1GKJA 4BAAA 1GK2A 1W27A 3RD8A 4MX2A 1B8FA 1TJWA 1J3UA 1U15A 1FUPA 1FURA 5EYVA 1FUOA 3QBPA 3CZOA 1VDKA 1HY0A 3UNVA 2PTSA 2RJSA 1YFEA 3R6QA 4V2RA 1YFMA 2OHYA 2PFMA 2O6YA 2E9FA 1RE5A 1DCNA 4V2QA 2YIIA 1K62A 2QGAB 2O78A 2O7DA 2O7EA 2FUSA 3OCEA 4C5SA 4EEIA 2QVEA 4C5RA 1JSWA 4C5UA 1GKMA 1FUQA 2O7FA 1HY1A 3KDZA 2RJRA 4EFCA 1I0AA 1DOFA 1TJUA 5EYTA 3E04A 4NSLA 4ADLA 1TJ7A 2O7BA 1AUWA 2PTRA 4CQ5A 5D6BA 3NZ4A 3R6VA 5F92A 4ADMA 4NLEA 1GK3A 4FLCA 3BHGA 3KDYA 3GZHA 5HW2A 1Y2MA 1XWOA 1C3UA 3GTDA 1K7WA 3RRPA 3TV2A 1YISA 4BABA 4FFXA 4APAA 3OCFA 2J91A 2X75A 1EB4A 2NYFA 2NYNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3C A;  3C8T A;  4HGV A;  1T6J A;  4APB A;  2VD6 A;  1U16 A;  1TJV A;  3R6Y A;  2PTQ A;  4C6G A;  1T6P A;  2HVG A;  5F91 A;  3NO9 A;  1Q5N A;  1KQ7 A;  1GKJ A;  4BAA A;  1GK2 A;  1W27 A;  3RD8 A;  4MX2 A;  1B8F A;  1TJW A;  1J3U A;  1U15 A;  1FUP A;  1FUR A;  5EYV A;  1FUO A;  3QBP A;  3CZO A;  1VDK A;  1HY0 A;  3UNV A;  2PTS A;  2RJS A;  1YFE A;  3R6Q A;  4V2R A;  1YFM A;  2OHY A;  2PFM A;  2O6Y A;  2E9F A;  1RE5 A;  1DCN A;  4V2Q A;  2YII A;  1K62 A;  2QGA B;  2O78 A;  2O7D A;  2O7E A;  2FUS A;  3OCE A;  4C5S A;  4EEI A;  2QVE A;  4C5R A;  1JSW A;  4C5U A;  1GKM A;  1FUQ A;  2O7F A;  1HY1 A;  3KDZ A;  2RJR A;  4EFC A;  1I0A A;  1DOF A;  1TJU A;  5EYT A;  3E04 A;  4NSL A;  4ADL A;  1TJ7 A;  2O7B A;  1AUW A;  2PTR A;  4CQ5 A;  5D6B A;  3NZ4 A;  3R6V A;  5F92 A;  4ADM A;  4NLE A;  1GK3 A;  4FLC A;  3BHG A;  3KDY A;  3GZH A;  5HW2 A;  1Y2M A;  1XWO A;  1C3U A;  3GTD A;  1K7W A;  3RRP A;  3TV2 A;  1YIS A;  4BAB A;  4FFX A;  4APA A;  3OCF A;  2J91 A;  2X75 A;  1EB4 A;  2NYF A;  2NYN A; 
#chains in the Genus database with same CATH topology
 4YIH A;  4WNL A;  1C3C A;  1U0L A;  3C8T A;  4NFL A;  4HGV A;  1XL7 A;  1T6J A;  4APB A;  1IW7 D;  1U16 A;  2VD6 A;  1TJV A;  4E88 A;  3R6Y A;  4YIK A;  3F4T A;  2PTQ A;  4C6G A;  1T6P A;  2HVG A;  5F91 A;  2I7D A;  3NO9 A;  1KQ7 A;  1Q5N A;  1GKJ A;  1XMD A;  4BAA A;  3CRW 1;  1GK2 A;  1W27 A;  5H8W A;  3RD8 A;  4MX2 A;  1B8F A;  1TJW A;  1J3U A;  1Z4J A;  1U15 A;  1XLY A;  4L57 A;  1FUP A;  1FUR A;  5EYV A;  1MH9 A;  1T9H A;  1Z4Q A;  1FUO A;  3QBP A;  3CZO A;  1VDK A;  1HY0 A;  4MWO A;  3UNV A;  2PTS A;  2RJS A;  2D28 C;  1YFE A;  2YV5 A;  3R6Q A;  4V2R A;  2JAW A;  2VL7 A;  4MUM A;  1Z4I A;  1YFM A;  2OHY A;  5M0I A;  2PFM A;  2O6Y A;  2E9F A;  1RE5 A;  1DCN A;  4V2Q A;  2YII A;  2FEL A;  1K62 A;  2QGA B;  3BWV A;  2D27 A;  1Q92 A;  2O78 A;  3U13 A;  2O7D A;  2O7E A;  2FUS A;  3OCE A;  3U19 A;  4C5S A;  4EEI A;  2QVE A;  4C5R A;  1JSW A;  4C5U A;  4A15 A;  1GKM A;  1FUQ A;  2O7F A;  1XL8 A;  1HY1 A;  3KDZ A;  2RJR A;  4EFC A;  3CRV A;  1I0A A;  1DOF A;  1Q91 A;  1TJU A;  5EYT A;  1Z4M A;  5M0J A;  3E04 A;  2JAU A;  4NSL A;  2RCN A;  4ADL A;  1TJ7 A;  2O7B A;  3F4S A;  1AUW A;  2PTR A;  3CI0 K;  2JAO A;  4CQ5 A;  3F4R A;  5D6B A;  3NZ4 A;  3R6V A;  5F92 A;  4ADM A;  4NLE A;  1GK3 A;  4FLC A;  3BHG A;  3KDY A;  3GZH A;  2VSF A;  4L6A A;  5HW2 A;  1Z4L A;  1Y2M A;  2FEN A;  1XWO A;  4IQJ M;  1Z4K A;  1C3U A;  3GTD A;  1Z4P X;  1K7W A;  3RRP A;  3TV2 A;  1YIS A;  4BAB A;  4L6C A;  1XMC A;  4FFX A;  4APA A;  3OCF A;  2J91 A;  2X75 A;  2JAR A;  1EB4 A;  2NYF A;  2NYN A; 
#chains in the Genus database with same CATH homology
 1C3C A;  3C8T A;  4HGV A;  1T6J A;  4APB A;  2VD6 A;  1U16 A;  1TJV A;  3R6Y A;  2PTQ A;  4C6G A;  1T6P A;  2HVG A;  5F91 A;  3NO9 A;  1Q5N A;  1KQ7 A;  1GKJ A;  4BAA A;  1GK2 A;  1W27 A;  3RD8 A;  4MX2 A;  1B8F A;  1TJW A;  1J3U A;  1U15 A;  1FUP A;  1FUR A;  5EYV A;  1FUO A;  3QBP A;  3CZO A;  1VDK A;  1HY0 A;  3UNV A;  2PTS A;  2RJS A;  1YFE A;  3R6Q A;  4V2R A;  1YFM A;  2OHY A;  2PFM A;  2O6Y A;  2E9F A;  1RE5 A;  1DCN A;  4V2Q A;  2YII A;  1K62 A;  2QGA B;  2O78 A;  2O7D A;  2O7E A;  2FUS A;  3OCE A;  4C5S A;  4EEI A;  2QVE A;  4C5R A;  1JSW A;  4C5U A;  1GKM A;  1FUQ A;  2O7F A;  1HY1 A;  3KDZ A;  2RJR A;  4EFC A;  1I0A A;  1DOF A;  1TJU A;  5EYT A;  3E04 A;  4NSL A;  4ADL A;  1TJ7 A;  2O7B A;  1AUW A;  2PTR A;  4CQ5 A;  5D6B A;  3NZ4 A;  3R6V A;  5F92 A;  4ADM A;  4NLE A;  1GK3 A;  4FLC A;  3BHG A;  3KDY A;  3GZH A;  5HW2 A;  1Y2M A;  1XWO A;  1C3U A;  3GTD A;  1K7W A;  3RRP A;  3TV2 A;  1YIS A;  4BAB A;  4FFX A;  4APA A;  3OCF A;  2J91 A;  2X75 A;  1EB4 A;  2NYF A;  2NYN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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