2E9FA

Crystal structure of t.th.hb8 argininosuccinate lyase complexed with l-arginine
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
449
structure length
449
Chain Sequence
PDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALPLLRLETAIHRRRSYGGTAPEAVRERLEEAKKEVGLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Thermus thermophilus
publication title Crystal Structure of T.th.HB8 Argininosuccinate lyase complexed with L-Arginine
rcsb
molecule keywords Argininosuccinate lyase
total genus 168
structure length 449
sequence length 449
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2007-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2e9fA03
1.10.275.50 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 2e9fA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2e9fA02
4APBA 1U15A 3OCEA 1T6JA 2O6YA 2O7DA 1KQ7A 1FURA 5HW2A 1TJUA 2PTRA 1TJWA 3C8TA 3RD8A 4V2QA 4NLEA 4FLCA 3CZOA 4MX2A 3R6QA 1FUOA 1J3UA 4APAA 4EFCA 3KDZA 5F92A 3E04A 1C3CA 4CQ5A 4FFXA 4C6GA 2O78A 1I0AA 4ADLA 2O7EA 3R6YA 2PTQA 2X75A 1HY0A 3UNVA 1AUWA 5F91A 4HGVA 1GK3A 1HY1A 2FUSA 3BHGA 1GK2A 1JSWA 5EYVA 3NO9A 4C5RA 1RE5A 5EYTA 2J91A 3KDYA 3NZ4A 3QBPA 2YIIA 4V2RA 2PTSA 3RRPA 2RJRA 1EB4A 1FUPA 2NYNA 2VD6A 1K7WA 1VDKA 3GTDA 4EEIA 4C5UA 1TJVA 1Q5NA 2HVGA 1GKMA 1YFMA 1T6PA 1FUQA 1W27A 1DOFA 1K62A 1Y2MA 4BAAA 1B8FA 2RJSA 4BABA 3OCFA 1TJ7A 2PFMA 1XWOA 1C3UA 5D6BA 2NYFA 2O7FA 3GZHA 3R6VA 4ADMA 1YISA 4NSLA 1DCNA 2E9FA 2O7BA 2QVEA 1GKJA 2OHYA 1U16A 2QGAB 1YFEA 3TV2A 4C5SA
chains in the Genus database with same CATH superfamily
2RCNA 4APBA 5H8WA 2JAWA 1U15A 3OCEA 1Z4JA 1T6JA 2O6YA 1KQ7A 1Z4QA 2O7DA 1FURA 5HW2A 3CRVA 1TJUA 2D27A 2PTRA 4A15A 4MWOA 4YIHA 1TJWA 3C8TA 3RD8A 4V2QA 4NLEA 4FLCA 3CZOA 4MX2A 1Q91A 3R6QA 1FUOA 1J3UA 3U13A 4APAA 4EFCA 3KDZA 3CRW1 5F92A 3E04A 1C3CA 4CQ5A 1IW7D 2JAUA 1Z4LA 4FFXA 4C6GA 2O78A 1XLYA 1I0AA 4ADLA 4IQJM 2O7EA 3R6YA 2PTQA 1Z4PX 2FELA 2X75A 1XMCA 1HY0A 3UNVA 1AUWA 2VSFA 5F91A 4HGVA 1GK3A 5M0IA 1HY1A 2FUSA 3BHGA 4YIKA 1GK2A 1JSWA 5EYVA 1U0LA 1T9HA 2YV5A 3NO9A 4C5RA 1RE5A 3CI0K 3F4RA 2VL7A 1XL8A 3F4SA 5EYTA 4L6AA 2J91A 3KDYA 3NZ4A 1XL7A 3QBPA 2YIIA 4V2RA 2PTSA 4E88A 4NFLA 3RRPA 1EB4A 1FUPA 2NYNA 2RJRA 2VD6A 1K7WA 1VDKA 1Z4MA 3GTDA 1MH9A 4L57A 4EEIA 5M0JA 4C5UA 1TJVA 1Q5NA 2HVGA 1Z4IA 1GKMA 1YFMA 2JAOA 2FENA 1T6PA 1FUQA 1W27A 1DOFA 1K62A 1Q92A 2JARA 3BWVA 1Y2MA 4BAAA 1B8FA 2RJSA 1XMDA 2I7DA 4BABA 3OCFA 1TJ7A 2PFMA 4WNLA 1XWOA 1C3UA 5D6BA 2NYFA 2O7FA 3GZHA 3R6VA 3F4TA 4ADMA 1YISA 3U19A 4NSLA 1DCNA 2E9FA 2O7BA 2QVEA 1GKJA 1Z4KA 2OHYA 4L6CA 1U16A 2QGAB 1YFEA 3TV2A 2D28C 4C5SA 4MUMA
chains in the Genus database with same CATH topology
4APBA 5H8WA 1U15A 3OCEA 1T6JA 2O6YA 2O7DA 1KQ7A 3CRVA 1FURA 5HW2A 1TJUA 2PTRA 4A15A 1TJWA 3C8TA 3RD8A 4V2QA 4NLEA 4FLCA 3CZOA 4MX2A 3R6QA 1FUOA 1J3UA 4APAA 4EFCA 3KDZA 3CRW1 5F92A 3E04A 1C3CA 4CQ5A 4FFXA 4C6GA 2O78A 1I0AA 4ADLA 2O7EA 3R6YA 2PTQA 2X75A 1XMCA 1HY0A 3UNVA 1AUWA 2VSFA 5F91A 4HGVA 1GK3A 1HY1A 2FUSA 3BHGA 1GK2A 1JSWA 5EYVA 3NO9A 4C5RA 1RE5A 2VL7A 1XL8A 5EYTA 2J91A 3KDYA 3NZ4A 1XL7A 3QBPA 2YIIA 4V2RA 2PTSA 3RRPA 2RJRA 1EB4A 1FUPA 2NYNA 2VD6A 1K7WA 1VDKA 3GTDA 4EEIA 4C5UA 1TJVA 1Q5NA 2HVGA 1GKMA 1YFMA 1T6PA 1FUQA 1W27A 1DOFA 1K62A 1Y2MA 4BAAA 1B8FA 2RJSA 1XMDA 4BABA 3OCFA 1TJ7A 2PFMA 1XWOA 1C3UA 5D6BA 2NYFA 2O7FA 3GZHA 3R6VA 4ADMA 1YISA 4NSLA 1DCNA 2E9FA 2O7BA 2QVEA 1GKJA 2OHYA 1U16A 2QGAB 1YFEA 3TV2A 4C5SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4APB A;  1U15 A;  3OCE A;  1T6J A;  2O6Y A;  2O7D A;  1KQ7 A;  1FUR A;  5HW2 A;  1TJU A;  2PTR A;  1TJW A;  3C8T A;  3RD8 A;  4V2Q A;  4NLE A;  4FLC A;  3CZO A;  4MX2 A;  3R6Q A;  1FUO A;  1J3U A;  4APA A;  4EFC A;  3KDZ A;  5F92 A;  3E04 A;  1C3C A;  4CQ5 A;  4FFX A;  4C6G A;  2O78 A;  1I0A A;  4ADL A;  2O7E A;  3R6Y A;  2PTQ A;  2X75 A;  1HY0 A;  3UNV A;  1AUW A;  5F91 A;  4HGV A;  1GK3 A;  1HY1 A;  2FUS A;  3BHG A;  1GK2 A;  1JSW A;  5EYV A;  3NO9 A;  4C5R A;  1RE5 A;  5EYT A;  2J91 A;  3KDY A;  3NZ4 A;  3QBP A;  2YII A;  4V2R A;  2PTS A;  3RRP A;  2RJR A;  1EB4 A;  1FUP A;  2NYN A;  2VD6 A;  1K7W A;  1VDK A;  3GTD A;  4EEI A;  4C5U A;  1TJV A;  1Q5N A;  2HVG A;  1GKM A;  1YFM A;  1T6P A;  1FUQ A;  1W27 A;  1DOF A;  1K62 A;  1Y2M A;  4BAA A;  1B8F A;  2RJS A;  4BAB A;  3OCF A;  1TJ7 A;  2PFM A;  1XWO A;  1C3U A;  5D6B A;  2NYF A;  2O7F A;  3GZH A;  3R6V A;  4ADM A;  1YIS A;  4NSL A;  1DCN A;  2E9F A;  2O7B A;  2QVE A;  1GKJ A;  2OHY A;  1U16 A;  2QGA B;  1YFE A;  3TV2 A;  4C5S A; 
#chains in the Genus database with same CATH topology
 2RCN A;  4APB A;  5H8W A;  2JAW A;  1U15 A;  3OCE A;  1Z4J A;  1T6J A;  2O6Y A;  1KQ7 A;  1Z4Q A;  2O7D A;  1FUR A;  5HW2 A;  3CRV A;  1TJU A;  2D27 A;  2PTR A;  4A15 A;  4MWO A;  4YIH A;  1TJW A;  3C8T A;  3RD8 A;  4V2Q A;  4NLE A;  4FLC A;  3CZO A;  4MX2 A;  1Q91 A;  3R6Q A;  1FUO A;  1J3U A;  3U13 A;  4APA A;  4EFC A;  3KDZ A;  3CRW 1;  5F92 A;  3E04 A;  1C3C A;  4CQ5 A;  1IW7 D;  2JAU A;  1Z4L A;  4FFX A;  4C6G A;  2O78 A;  1XLY A;  1I0A A;  4ADL A;  4IQJ M;  2O7E A;  3R6Y A;  2PTQ A;  1Z4P X;  2FEL A;  2X75 A;  1XMC A;  1HY0 A;  3UNV A;  1AUW A;  2VSF A;  5F91 A;  4HGV A;  1GK3 A;  5M0I A;  1HY1 A;  2FUS A;  3BHG A;  4YIK A;  1GK2 A;  1JSW A;  5EYV A;  1U0L A;  1T9H A;  2YV5 A;  3NO9 A;  4C5R A;  1RE5 A;  3CI0 K;  3F4R A;  2VL7 A;  1XL8 A;  3F4S A;  5EYT A;  4L6A A;  2J91 A;  3KDY A;  3NZ4 A;  1XL7 A;  3QBP A;  2YII A;  4V2R A;  2PTS A;  4E88 A;  4NFL A;  3RRP A;  1EB4 A;  1FUP A;  2NYN A;  2RJR A;  2VD6 A;  1K7W A;  1VDK A;  1Z4M A;  3GTD A;  1MH9 A;  4L57 A;  4EEI A;  5M0J A;  4C5U A;  1TJV A;  1Q5N A;  2HVG A;  1Z4I A;  1GKM A;  1YFM A;  2JAO A;  2FEN A;  1T6P A;  1FUQ A;  1W27 A;  1DOF A;  1K62 A;  1Q92 A;  2JAR A;  3BWV A;  1Y2M A;  4BAA A;  1B8F A;  2RJS A;  1XMD A;  2I7D A;  4BAB A;  3OCF A;  1TJ7 A;  2PFM A;  4WNL A;  1XWO A;  1C3U A;  5D6B A;  2NYF A;  2O7F A;  3GZH A;  3R6V A;  3F4T A;  4ADM A;  1YIS A;  3U19 A;  4NSL A;  1DCN A;  2E9F A;  2O7B A;  2QVE A;  1GKJ A;  1Z4K A;  2OHY A;  4L6C A;  1U16 A;  2QGA B;  1YFE A;  3TV2 A;  2D28 C;  4C5S A;  4MUM A; 
#chains in the Genus database with same CATH homology
 4APB A;  5H8W A;  1U15 A;  3OCE A;  1T6J A;  2O6Y A;  2O7D A;  1KQ7 A;  3CRV A;  1FUR A;  5HW2 A;  1TJU A;  2PTR A;  4A15 A;  1TJW A;  3C8T A;  3RD8 A;  4V2Q A;  4NLE A;  4FLC A;  3CZO A;  4MX2 A;  3R6Q A;  1FUO A;  1J3U A;  4APA A;  4EFC A;  3KDZ A;  3CRW 1;  5F92 A;  3E04 A;  1C3C A;  4CQ5 A;  4FFX A;  4C6G A;  2O78 A;  1I0A A;  4ADL A;  2O7E A;  3R6Y A;  2PTQ A;  2X75 A;  1XMC A;  1HY0 A;  3UNV A;  1AUW A;  2VSF A;  5F91 A;  4HGV A;  1GK3 A;  1HY1 A;  2FUS A;  3BHG A;  1GK2 A;  1JSW A;  5EYV A;  3NO9 A;  4C5R A;  1RE5 A;  2VL7 A;  1XL8 A;  5EYT A;  2J91 A;  3KDY A;  3NZ4 A;  1XL7 A;  3QBP A;  2YII A;  4V2R A;  2PTS A;  3RRP A;  2RJR A;  1EB4 A;  1FUP A;  2NYN A;  2VD6 A;  1K7W A;  1VDK A;  3GTD A;  4EEI A;  4C5U A;  1TJV A;  1Q5N A;  2HVG A;  1GKM A;  1YFM A;  1T6P A;  1FUQ A;  1W27 A;  1DOF A;  1K62 A;  1Y2M A;  4BAA A;  1B8F A;  2RJS A;  1XMD A;  4BAB A;  3OCF A;  1TJ7 A;  2PFM A;  1XWO A;  1C3U A;  5D6B A;  2NYF A;  2O7F A;  3GZH A;  3R6V A;  4ADM A;  1YIS A;  4NSL A;  1DCN A;  2E9F A;  2O7B A;  2QVE A;  1GKJ A;  2OHY A;  1U16 A;  2QGA B;  1YFE A;  3TV2 A;  4C5S A; 
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similar chains in the pdb database (?% sequence similarity)

 
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