2E9FA

Crystal structure of t.th.hb8 argininosuccinate lyase complexed with l-arginine
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
449
structure length
449
Chain Sequence
b'PDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALPLLRLETAIHRRRSYGGTAPEAVRERLEEAKKEVGLD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of T.th.HB8 Argininosuccinate lyase complexed with L-Arginine
rcsb
molecule keywords Argininosuccinate lyase
source organism Thermus thermophilus
molecule tags Lyase
total genus 168
structure length 449
sequence length 449
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2007-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2e9fA03
1.10.275.50 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 2e9fA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2e9fA02
3RD8A 2O78A 4BABA 3OCFA 1W27A 1YFEA 3KDZA 2O7FA 1I0AA 5F92A 2E9FA 1YISA 1C3CA 2QGAB 3R6QA 1GK3A 1TJ7A 4EEIA 1TJVA 5D6BA 2NYNA 3R6VA 2NYFA 3KDYA 4EFCA 2PTSA 2O7EA 1J3UA 1EB4A 3UNVA 1U15A 2RJSA 2O7BA 4MX2A 1GKMA 1KQ7A 5HW2A 4FFXA 4C6GA 1TJWA 1JSWA 3C8TA 1GKJA 2OHYA 1K62A 4NSLA 2PFMA 4V2QA 4ADMA 1DOFA 1FUPA 5EYTA 4V2RA 2PTQA 1K7WA 3NZ4A 1FUQA 2X75A 1T6JA 2J91A 1XWOA 5EYVA 1Y2MA 2YIIA 4HGVA 1GK2A 4BAAA 3BHGA 3R6YA 3QBPA 2FUSA 1C3UA 2VD6A 1T6PA 3RRPA 1FUOA 3GTDA 1AUWA 2QVEA 4APBA 4CQ5A 1FURA 2O7DA 3E04A 1Q5NA 4NLEA 2PTRA 1RE5A 2RJRA 4C5RA 4C5UA 1HY1A 5F91A 1VDKA 3TV2A 4C5SA 2O6YA 3NO9A 4FLCA 1HY0A 2HVGA 1U16A 1B8FA 4APAA 1TJUA 3GZHA 3CZOA 1DCNA 1YFMA 3OCEA 4ADLA
chains in the Genus database with same CATH superfamily
3RD8A 2O78A 4BABA 1Z4JA 3OCFA 1Q91A 1W27A 4MWOA 1IW7D 4E88A 1YFEA 4L6CA 3KDZA 2O7FA 1I0AA 3U13A 4WNLA 5F92A 1XMCA 2VSFA 2E9FA 3BWVA 1YISA 4A15A 1C3CA 2QGAB 4MUMA 3R6QA 1GK3A 1TJ7A 2RCNA 4EEIA 1TJVA 5D6BA 1XLYA 2NYNA 3R6VA 2NYFA 2JAWA 3KDYA 4EFCA 2PTSA 4L57A 2O7EA 1J3UA 1EB4A 3UNVA 1Z4PX 1U15A 2RJSA 1Z4IA 2JARA 2O7BA 4MX2A 1GKMA 3CRW1 1KQ7A 5HW2A 4FFXA 4L6AA 4C6GA 1TJWA 1JSWA 3C8TA 1GKJA 2OHYA 1K62A 4NSLA 1Z4KA 2FENA 2PFMA 4V2QA 2JAOA 4ADMA 1DOFA 1FUPA 5M0JA 5EYTA 1Q92A 2FELA 1T9HA 1U0LA 4V2RA 2PTQA 1K7WA 1XL8A 1FUQA 2VL7A 3NZ4A 2JAUA 2X75A 1T6JA 2J91A 1MH9A 1XWOA 5EYVA 4YIKA 5H8WA 1Z4MA 1Y2MA 3F4TA 2YV5A 2YIIA 4HGVA 2D28C 1GK2A 4BAAA 3BHGA 3R6YA 5M0IA 1XMDA 3QBPA 2FUSA 1C3UA 3F4SA 2VD6A 1T6PA 3RRPA 1FUOA 4YIHA 3GTDA 1AUWA 4NFLA 2QVEA 4APBA 4CQ5A 1Z4QA 1FURA 2O7DA 3E04A 1Q5NA 4NLEA 2PTRA 1RE5A 2RJRA 4C5RA 1Z4LA 4C5UA 1HY1A 3CRVA 1XL7A 5F91A 1VDKA 3TV2A 4C5SA 2O6YA 3NO9A 4FLCA 1HY0A 2HVGA 3CI0K 2I7DA 2D27A 1U16A 1B8FA 4APAA 1TJUA 3U19A 3GZHA 3CZOA 1DCNA 1YFMA 4IQJM 3OCEA 3F4RA 4ADLA
chains in the Genus database with same CATH topology
3RD8A 2O78A 4BABA 3OCFA 1W27A 1YFEA 3KDZA 2O7FA 1I0AA 5F92A 1XMCA 2VSFA 2E9FA 1YISA 4A15A 1C3CA 2QGAB 3R6QA 1GK3A 1TJ7A 4EEIA 1TJVA 5D6BA 2NYNA 3R6VA 2NYFA 3KDYA 4EFCA 2PTSA 2O7EA 1J3UA 1EB4A 3UNVA 1U15A 2RJSA 2O7BA 4MX2A 1GKMA 3CRW1 1KQ7A 5HW2A 4FFXA 4C6GA 1TJWA 1JSWA 3C8TA 1GKJA 2OHYA 1K62A 4NSLA 2PFMA 4V2QA 4ADMA 1DOFA 1FUPA 5EYTA 4V2RA 2PTQA 1XL8A 1K7WA 2VL7A 1FUQA 3NZ4A 2X75A 1T6JA 2J91A 1XWOA 5EYVA 5H8WA 1Y2MA 2YIIA 4HGVA 1GK2A 4BAAA 3BHGA 3R6YA 1XMDA 3QBPA 2FUSA 1C3UA 2VD6A 1T6PA 3RRPA 1FUOA 3GTDA 1AUWA 2QVEA 4APBA 4CQ5A 1FURA 2O7DA 3E04A 1Q5NA 4NLEA 2PTRA 1RE5A 2RJRA 4C5RA 4C5UA 1HY1A 3CRVA 1XL7A 5F91A 1VDKA 3TV2A 4C5SA 2O6YA 3NO9A 4FLCA 1HY0A 2HVGA 1U16A 1B8FA 4APAA 1TJUA 3GZHA 3CZOA 1DCNA 1YFMA 3OCEA 4ADLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RD8 A;  2O78 A;  4BAB A;  3OCF A;  1W27 A;  1YFE A;  3KDZ A;  2O7F A;  1I0A A;  5F92 A;  2E9F A;  1YIS A;  1C3C A;  2QGA B;  3R6Q A;  1GK3 A;  1TJ7 A;  4EEI A;  1TJV A;  5D6B A;  2NYN A;  3R6V A;  2NYF A;  3KDY A;  4EFC A;  2PTS A;  2O7E A;  1J3U A;  1EB4 A;  3UNV A;  1U15 A;  2RJS A;  2O7B A;  4MX2 A;  1GKM A;  1KQ7 A;  5HW2 A;  4FFX A;  4C6G A;  1TJW A;  1JSW A;  3C8T A;  1GKJ A;  2OHY A;  1K62 A;  4NSL A;  2PFM A;  4V2Q A;  4ADM A;  1DOF A;  1FUP A;  5EYT A;  4V2R A;  2PTQ A;  1K7W A;  3NZ4 A;  1FUQ A;  2X75 A;  1T6J A;  2J91 A;  1XWO A;  5EYV A;  1Y2M A;  2YII A;  4HGV A;  1GK2 A;  4BAA A;  3BHG A;  3R6Y A;  3QBP A;  2FUS A;  1C3U A;  2VD6 A;  1T6P A;  3RRP A;  1FUO A;  3GTD A;  1AUW A;  2QVE A;  4APB A;  4CQ5 A;  1FUR A;  2O7D A;  3E04 A;  1Q5N A;  4NLE A;  2PTR A;  1RE5 A;  2RJR A;  4C5R A;  4C5U A;  1HY1 A;  5F91 A;  1VDK A;  3TV2 A;  4C5S A;  2O6Y A;  3NO9 A;  4FLC A;  1HY0 A;  2HVG A;  1U16 A;  1B8F A;  4APA A;  1TJU A;  3GZH A;  3CZO A;  1DCN A;  1YFM A;  3OCE A;  4ADL A; 
#chains in the Genus database with same CATH topology
 3RD8 A;  2O78 A;  4BAB A;  1Z4J A;  3OCF A;  1Q91 A;  1W27 A;  4MWO A;  1IW7 D;  4E88 A;  1YFE A;  4L6C A;  3KDZ A;  2O7F A;  1I0A A;  3U13 A;  4WNL A;  5F92 A;  1XMC A;  2VSF A;  2E9F A;  3BWV A;  1YIS A;  4A15 A;  1C3C A;  2QGA B;  4MUM A;  3R6Q A;  1GK3 A;  1TJ7 A;  2RCN A;  4EEI A;  1TJV A;  5D6B A;  1XLY A;  2NYN A;  3R6V A;  2NYF A;  2JAW A;  3KDY A;  4EFC A;  2PTS A;  4L57 A;  2O7E A;  1J3U A;  1EB4 A;  3UNV A;  1Z4P X;  1U15 A;  2RJS A;  1Z4I A;  2JAR A;  2O7B A;  4MX2 A;  1GKM A;  3CRW 1;  1KQ7 A;  5HW2 A;  4FFX A;  4L6A A;  4C6G A;  1TJW A;  1JSW A;  3C8T A;  1GKJ A;  2OHY A;  1K62 A;  4NSL A;  1Z4K A;  2FEN A;  2PFM A;  4V2Q A;  2JAO A;  4ADM A;  1DOF A;  1FUP A;  5M0J A;  5EYT A;  1Q92 A;  2FEL A;  1T9H A;  1U0L A;  4V2R A;  2PTQ A;  1K7W A;  1XL8 A;  1FUQ A;  2VL7 A;  3NZ4 A;  2JAU A;  2X75 A;  1T6J A;  2J91 A;  1MH9 A;  1XWO A;  5EYV A;  4YIK A;  5H8W A;  1Z4M A;  1Y2M A;  3F4T A;  2YV5 A;  2YII A;  4HGV A;  2D28 C;  1GK2 A;  4BAA A;  3BHG A;  3R6Y A;  5M0I A;  1XMD A;  3QBP A;  2FUS A;  1C3U A;  3F4S A;  2VD6 A;  1T6P A;  3RRP A;  1FUO A;  4YIH A;  3GTD A;  1AUW A;  4NFL A;  2QVE A;  4APB A;  4CQ5 A;  1Z4Q A;  1FUR A;  2O7D A;  3E04 A;  1Q5N A;  4NLE A;  2PTR A;  1RE5 A;  2RJR A;  4C5R A;  1Z4L A;  4C5U A;  1HY1 A;  3CRV A;  1XL7 A;  5F91 A;  1VDK A;  3TV2 A;  4C5S A;  2O6Y A;  3NO9 A;  4FLC A;  1HY0 A;  2HVG A;  3CI0 K;  2I7D A;  2D27 A;  1U16 A;  1B8F A;  4APA A;  1TJU A;  3U19 A;  3GZH A;  3CZO A;  1DCN A;  1YFM A;  4IQJ M;  3OCE A;  3F4R A;  4ADL A; 
#chains in the Genus database with same CATH homology
 3RD8 A;  2O78 A;  4BAB A;  3OCF A;  1W27 A;  1YFE A;  3KDZ A;  2O7F A;  1I0A A;  5F92 A;  1XMC A;  2VSF A;  2E9F A;  1YIS A;  4A15 A;  1C3C A;  2QGA B;  3R6Q A;  1GK3 A;  1TJ7 A;  4EEI A;  1TJV A;  5D6B A;  2NYN A;  3R6V A;  2NYF A;  3KDY A;  4EFC A;  2PTS A;  2O7E A;  1J3U A;  1EB4 A;  3UNV A;  1U15 A;  2RJS A;  2O7B A;  4MX2 A;  1GKM A;  3CRW 1;  1KQ7 A;  5HW2 A;  4FFX A;  4C6G A;  1TJW A;  1JSW A;  3C8T A;  1GKJ A;  2OHY A;  1K62 A;  4NSL A;  2PFM A;  4V2Q A;  4ADM A;  1DOF A;  1FUP A;  5EYT A;  4V2R A;  2PTQ A;  1XL8 A;  1K7W A;  2VL7 A;  1FUQ A;  3NZ4 A;  2X75 A;  1T6J A;  2J91 A;  1XWO A;  5EYV A;  5H8W A;  1Y2M A;  2YII A;  4HGV A;  1GK2 A;  4BAA A;  3BHG A;  3R6Y A;  1XMD A;  3QBP A;  2FUS A;  1C3U A;  2VD6 A;  1T6P A;  3RRP A;  1FUO A;  3GTD A;  1AUW A;  2QVE A;  4APB A;  4CQ5 A;  1FUR A;  2O7D A;  3E04 A;  1Q5N A;  4NLE A;  2PTR A;  1RE5 A;  2RJR A;  4C5R A;  4C5U A;  1HY1 A;  3CRV A;  1XL7 A;  5F91 A;  1VDK A;  3TV2 A;  4C5S A;  2O6Y A;  3NO9 A;  4FLC A;  1HY0 A;  2HVG A;  1U16 A;  1B8F A;  4APA A;  1TJU A;  3GZH A;  3CZO A;  1DCN A;  1YFM A;  3OCE A;  4ADL A; 
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