4NLEA

Crystal structure of apo adenylosuccinate lyase from mycobacterium smegmatis
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
468
structure length
464
Chain Sequence
TIPNVLANRYASDEMVAIWSPEAKIIAERRLWLAVLRAQAELGVAVPDGVVEDYERVLENVDLESIAARERVRHDVKARIEEFNAHEHVHKGMTSRDLTENVEQLQIRQSLELVFSHGVAVVARLAERAVVYRDLVMAGRSHNVAAQATTLGKRFASAAEETLVALTRLRELIDRYPLRGVKGPMGTAQDMLDLFGGDVGKLADLERRVAEFLGFTEVFTSVGQVYPRSLDHDVLSALVQFGAGPSSMAHTIRLMAGHELVTEGFAPGQVGSSAMPHKMNTRSCERVNGLQVVLRGYASMAAELAGAQWNEGDVFCSVVRRVALPDAFFAIDGQTETFLTVLDEFGAYPAVIQRELDRYLPFLATTRILMAAVRAGVGREAAHEVIKEHAVAVALAMREQGREPDLIDRLAGDPRLPLDKVALEAALEDKQAFTGAAGDQVDGVVAAVGELVSRYPEAAKYTSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Adenylosuccinate lyase
publication title Structural and kinetic studies on Adenylosuccinate Lyase from Mycobacterium smegmatis and Mycobacterium tuberculosis provide new insights on the catalytic residues of the enzyme
pubmed doi rcsb
source organism Mycobacterium smegmatis
total genus 171
structure length 464
sequence length 468
chains with identical sequence B
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2013-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 4nleA03
1.10.275.60 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 4nleA02
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4nleA01
3RRPA 3R6VA 1K62A 1TJUA 3NO9A 2O7BA 1TJVA 1GK3A 2QVEA 2RJSA 1JSWA 2PFMA 1Q5NA 1W27A 1TJWA 1XWOA 2VD6A 4APAA 3GZHA 2NYFA 1K7WA 4V2RA 3CZOA 3UNVA 4BABA 2PTQA 1FURA 1U15A 4C6GA 2PTSA 3E04A 4CQ5A 3KDYA 1AUWA 2O78A 1FUOA 1T6JA 5HW2A 1FUPA 1GK2A 2FUSA 3BHGA 2O7FA 2OHYA 2O7EA 3R6YA 1DOFA 1Y2MA 1C3UA 2E9FA 3C8TA 2RJRA 4FFXA 1I0AA 1GKJA 2YIIA 4APBA 1B8FA 2J91A 1YFEA 4NLEA 3GTDA 1YISA 1DCNA 4FLCA 4NSLA 4EEIA 3TV2A 4EFCA 1U16A 2HVGA 5EYVA 1GKMA 1VDKA 4C5UA 5F91A 5EYTA 1C3CA 1RE5A 3QBPA 1EB4A 2NYNA 2QGAB 3NZ4A 4ADMA 2X75A 3OCFA 1TJ7A 2PTRA 1T6PA 4HGVA 1J3UA 1HY0A 1KQ7A 3OCEA 4BAAA 1FUQA 5F92A 4ADLA 4MX2A 3R6QA 4V2QA 3KDZA 4C5RA 2O6YA 3RD8A 2O7DA 4C5SA 5D6BA 1HY1A 1YFMA
chains in the Genus database with same CATH superfamily
3RRPA 3R6VA 1K62A 1Z4QA 1TJUA 3CI0K 3NO9A 1XMDA 2O7BA 1TJVA 1GK3A 2QVEA 2RJSA 1JSWA 2PFMA 1Q5NA 1W27A 1TJWA 2JAWA 1XWOA 2VD6A 4APAA 5M0IA 3GZHA 2RCNA 1K7WA 2YV5A 2NYFA 3CZOA 4V2RA 3UNVA 4BABA 2PTQA 4A15A 5M0JA 1FURA 1U15A 4C6GA 1XL8A 2PTSA 1Z4IA 2FENA 2VL7A 2I7DA 3E04A 4MUMA 4CQ5A 1XLYA 3KDYA 1AUWA 1U0LA 4WNLA 2O78A 1FUOA 4L6AA 5HW2A 1T6JA 1FUPA 1GK2A 2FELA 2FUSA 3BHGA 2JAOA 1Z4JA 1Z4KA 1IW7D 2O7FA 1Z4PX 2OHYA 2O7EA 1T9HA 3R6YA 1DOFA 1Y2MA 1C3UA 2E9FA 3C8TA 2RJRA 1Z4LA 4FFXA 2JAUA 1I0AA 2D27A 1Q91A 1GKJA 1Z4MA 2YIIA 4APBA 1B8FA 2J91A 4MWOA 2D28C 1YFEA 3CRW1 4NLEA 3GTDA 1YISA 1DCNA 4FLCA 4NSLA 4EEIA 3TV2A 4E88A 4EFCA 3F4RA 1U16A 2HVGA 5EYVA 1GKMA 1VDKA 4C5UA 5F91A 3U13A 2VSFA 5EYTA 1C3CA 1RE5A 3QBPA 3U19A 4L57A 1EB4A 2NYNA 2QGAB 3NZ4A 4YIKA 3CRVA 4ADMA 3F4TA 2X75A 4NFLA 3BWVA 3F4SA 3OCFA 1TJ7A 2PTRA 1T6PA 4HGVA 4L6CA 1J3UA 4YIHA 1HY0A 1MH9A 2JARA 1KQ7A 1Q92A 3OCEA 1FUQA 5F92A 4BAAA 4ADLA 4MX2A 3R6QA 4V2QA 4IQJM 3KDZA 1XL7A 4C5RA 2O6YA 3RD8A 2O7DA 4C5SA 1XMCA 5D6BA 1HY1A 5H8WA 1YFMA
chains in the Genus database with same CATH topology
3RRPA 3R6VA 1K62A 1TJUA 3NO9A 1XMDA 2O7BA 1TJVA 1GK3A 2QVEA 2RJSA 1JSWA 2PFMA 1Q5NA 1W27A 1TJWA 1XWOA 2VD6A 4APAA 3GZHA 2NYFA 1K7WA 4V2RA 3CZOA 3UNVA 4A15A 2PTQA 4BABA 1FURA 1U15A 4C6GA 1XL8A 2PTSA 2VL7A 3E04A 4CQ5A 3KDYA 1AUWA 2O78A 1FUOA 5HW2A 1T6JA 1FUPA 1GK2A 2FUSA 3BHGA 2O7FA 2OHYA 2O7EA 3R6YA 1DOFA 1Y2MA 1C3UA 2E9FA 3C8TA 2RJRA 4FFXA 1I0AA 1GKJA 2YIIA 4APBA 1B8FA 2J91A 1YFEA 3CRW1 4NLEA 3GTDA 1YISA 1DCNA 4FLCA 4NSLA 4EEIA 3TV2A 4EFCA 1U16A 2HVGA 5EYVA 1GKMA 1VDKA 4C5UA 5F91A 2VSFA 5EYTA 1C3CA 1RE5A 3QBPA 1EB4A 2NYNA 2QGAB 3NZ4A 3CRVA 4ADMA 2X75A 3OCFA 1TJ7A 2PTRA 1T6PA 4HGVA 1J3UA 1HY0A 1KQ7A 3OCEA 4BAAA 1FUQA 5F92A 4ADLA 4MX2A 3R6QA 4V2QA 3KDZA 1XL7A 4C5RA 2O6YA 3RD8A 2O7DA 4C5SA 1XMCA 5D6BA 1HY1A 5H8WA 1YFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RRP A;  3R6V A;  1K62 A;  1TJU A;  3NO9 A;  2O7B A;  1TJV A;  1GK3 A;  2QVE A;  2RJS A;  1JSW A;  2PFM A;  1Q5N A;  1W27 A;  1TJW A;  1XWO A;  2VD6 A;  4APA A;  3GZH A;  2NYF A;  1K7W A;  4V2R A;  3CZO A;  3UNV A;  4BAB A;  2PTQ A;  1FUR A;  1U15 A;  4C6G A;  2PTS A;  3E04 A;  4CQ5 A;  3KDY A;  1AUW A;  2O78 A;  1FUO A;  1T6J A;  5HW2 A;  1FUP A;  1GK2 A;  2FUS A;  3BHG A;  2O7F A;  2OHY A;  2O7E A;  3R6Y A;  1DOF A;  1Y2M A;  1C3U A;  2E9F A;  3C8T A;  2RJR A;  4FFX A;  1I0A A;  1GKJ A;  2YII A;  4APB A;  1B8F A;  2J91 A;  1YFE A;  4NLE A;  3GTD A;  1YIS A;  1DCN A;  4FLC A;  4NSL A;  4EEI A;  3TV2 A;  4EFC A;  1U16 A;  2HVG A;  5EYV A;  1GKM A;  1VDK A;  4C5U A;  5F91 A;  5EYT A;  1C3C A;  1RE5 A;  3QBP A;  1EB4 A;  2NYN A;  2QGA B;  3NZ4 A;  4ADM A;  2X75 A;  3OCF A;  1TJ7 A;  2PTR A;  1T6P A;  4HGV A;  1J3U A;  1HY0 A;  1KQ7 A;  3OCE A;  4BAA A;  1FUQ A;  5F92 A;  4ADL A;  4MX2 A;  3R6Q A;  4V2Q A;  3KDZ A;  4C5R A;  2O6Y A;  3RD8 A;  2O7D A;  4C5S A;  5D6B A;  1HY1 A;  1YFM A; 
#chains in the Genus database with same CATH topology
 3RRP A;  3R6V A;  1K62 A;  1Z4Q A;  1TJU A;  3CI0 K;  3NO9 A;  1XMD A;  2O7B A;  1TJV A;  1GK3 A;  2QVE A;  2RJS A;  1JSW A;  2PFM A;  1Q5N A;  1W27 A;  1TJW A;  2JAW A;  1XWO A;  2VD6 A;  4APA A;  5M0I A;  3GZH A;  2RCN A;  1K7W A;  2YV5 A;  2NYF A;  3CZO A;  4V2R A;  3UNV A;  4BAB A;  2PTQ A;  4A15 A;  5M0J A;  1FUR A;  1U15 A;  4C6G A;  1XL8 A;  2PTS A;  1Z4I A;  2FEN A;  2VL7 A;  2I7D A;  3E04 A;  4MUM A;  4CQ5 A;  1XLY A;  3KDY A;  1AUW A;  1U0L A;  4WNL A;  2O78 A;  1FUO A;  4L6A A;  5HW2 A;  1T6J A;  1FUP A;  1GK2 A;  2FEL A;  2FUS A;  3BHG A;  2JAO A;  1Z4J A;  1Z4K A;  1IW7 D;  2O7F A;  1Z4P X;  2OHY A;  2O7E A;  1T9H A;  3R6Y A;  1DOF A;  1Y2M A;  1C3U A;  2E9F A;  3C8T A;  2RJR A;  1Z4L A;  4FFX A;  2JAU A;  1I0A A;  2D27 A;  1Q91 A;  1GKJ A;  1Z4M A;  2YII A;  4APB A;  1B8F A;  2J91 A;  4MWO A;  2D28 C;  1YFE A;  3CRW 1;  4NLE A;  3GTD A;  1YIS A;  1DCN A;  4FLC A;  4NSL A;  4EEI A;  3TV2 A;  4E88 A;  4EFC A;  3F4R A;  1U16 A;  2HVG A;  5EYV A;  1GKM A;  1VDK A;  4C5U A;  5F91 A;  3U13 A;  2VSF A;  5EYT A;  1C3C A;  1RE5 A;  3QBP A;  3U19 A;  4L57 A;  1EB4 A;  2NYN A;  2QGA B;  3NZ4 A;  4YIK A;  3CRV A;  4ADM A;  3F4T A;  2X75 A;  4NFL A;  3BWV A;  3F4S A;  3OCF A;  1TJ7 A;  2PTR A;  1T6P A;  4HGV A;  4L6C A;  1J3U A;  4YIH A;  1HY0 A;  1MH9 A;  2JAR A;  1KQ7 A;  1Q92 A;  3OCE A;  1FUQ A;  5F92 A;  4BAA A;  4ADL A;  4MX2 A;  3R6Q A;  4V2Q A;  4IQJ M;  3KDZ A;  1XL7 A;  4C5R A;  2O6Y A;  3RD8 A;  2O7D A;  4C5S A;  1XMC A;  5D6B A;  1HY1 A;  5H8W A;  1YFM A; 
#chains in the Genus database with same CATH homology
 3RRP A;  3R6V A;  1K62 A;  1TJU A;  3NO9 A;  1XMD A;  2O7B A;  1TJV A;  1GK3 A;  2QVE A;  2RJS A;  1JSW A;  2PFM A;  1Q5N A;  1W27 A;  1TJW A;  1XWO A;  2VD6 A;  4APA A;  3GZH A;  2NYF A;  1K7W A;  4V2R A;  3CZO A;  3UNV A;  4A15 A;  2PTQ A;  4BAB A;  1FUR A;  1U15 A;  4C6G A;  1XL8 A;  2PTS A;  2VL7 A;  3E04 A;  4CQ5 A;  3KDY A;  1AUW A;  2O78 A;  1FUO A;  5HW2 A;  1T6J A;  1FUP A;  1GK2 A;  2FUS A;  3BHG A;  2O7F A;  2OHY A;  2O7E A;  3R6Y A;  1DOF A;  1Y2M A;  1C3U A;  2E9F A;  3C8T A;  2RJR A;  4FFX A;  1I0A A;  1GKJ A;  2YII A;  4APB A;  1B8F A;  2J91 A;  1YFE A;  3CRW 1;  4NLE A;  3GTD A;  1YIS A;  1DCN A;  4FLC A;  4NSL A;  4EEI A;  3TV2 A;  4EFC A;  1U16 A;  2HVG A;  5EYV A;  1GKM A;  1VDK A;  4C5U A;  5F91 A;  2VSF A;  5EYT A;  1C3C A;  1RE5 A;  3QBP A;  1EB4 A;  2NYN A;  2QGA B;  3NZ4 A;  3CRV A;  4ADM A;  2X75 A;  3OCF A;  1TJ7 A;  2PTR A;  1T6P A;  4HGV A;  1J3U A;  1HY0 A;  1KQ7 A;  3OCE A;  4BAA A;  1FUQ A;  5F92 A;  4ADL A;  4MX2 A;  3R6Q A;  4V2Q A;  3KDZ A;  1XL7 A;  4C5R A;  2O6Y A;  3RD8 A;  2O7D A;  4C5S A;  1XMC A;  5D6B A;  1HY1 A;  5H8W A;  1YFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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