2PTSA

Crystal structure of wild type escherichia coli adenylosuccinate lyase
Total Genus 166
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
458
structure length
447
Chain Sequence
MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAITMVDELKHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Escherichia coli
publication title Substrate and Product Complexes of Escherichia coli Adenylosuccinate Lyase Provide New Insights into the Enzymatic Mechanism.
pubmed doi rcsb
molecule keywords Adenylosuccinate lyase
total genus 166
structure length 447
sequence length 458
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2ptsA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2ptsA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2ptsA02
5D6BA 3KDZA 2E9FA 4ADLA 2RJSA 3NZ4A 4C6GA 1EB4A 1W27A 1K7WA 1AUWA 3GTDA 1TJVA 2OHYA 1RE5A 2RJRA 5F92A 1DCNA 2HVGA 4C5SA 1C3UA 1KQ7A 1FURA 1TJWA 3C8TA 2PTQA 2O78A 4BABA 1T6PA 2O7FA 1I0AA 1FUOA 4BAAA 1C3CA 1YFMA 3R6VA 1TJ7A 1GKMA 3BHGA 4V2QA 3RD8A 3RRPA 2O7BA 3R6YA 3QBPA 4V2RA 2X75A 4EEIA 4FFXA 4CQ5A 2O7DA 5EYVA 1JSWA 1XWOA 1TJUA 4HGVA 2O6YA 1U15A 1T6JA 1B8FA 5EYTA 3E04A 4ADMA 3KDYA 3UNVA 4APAA 2O7EA 2QGAB 5F91A 1U16A 1FUQA 2PTSA 3NO9A 2FUSA 1HY1A 2NYFA 3GZHA 4FLCA 2QVEA 3R6QA 2YIIA 1GK2A 1J3UA 1GK3A 1YISA 3CZOA 1YFEA 1VDKA 4APBA 4NSLA 2NYNA 1GKJA 1Y2MA 2J91A 3OCFA 5HW2A 4C5UA 2VD6A 1K62A 1HY0A 3OCEA 4EFCA 1FUPA 1DOFA 2PFMA 3TV2A 4MX2A 2PTRA 4NLEA 4C5RA 1Q5NA
chains in the Genus database with same CATH superfamily
5D6BA 3F4TA 3KDZA 2E9FA 4ADLA 1XMCA 2RJSA 1MH9A 4WNLA 3NZ4A 2I7DA 4C6GA 1EB4A 1W27A 1K7WA 1AUWA 3GTDA 1TJVA 2OHYA 1RE5A 2RJRA 5F92A 4A15A 1DCNA 2HVGA 1Z4IA 4C5SA 1C3UA 4L57A 1KQ7A 3F4SA 1FURA 4NLEA 1TJWA 3C8TA 2PTQA 2O78A 4BABA 2D28C 1T6PA 2O7FA 1Z4LA 2VL7A 1I0AA 1FUOA 4BAAA 1C3CA 1YFMA 3R6VA 1XLYA 1TJ7A 1GKMA 3CRVA 3BHGA 4V2QA 3RD8A 3RRPA 2D27A 2O7BA 3R6YA 3QBPA 4IQJM 4V2RA 2X75A 1Q91A 4EEIA 4FFXA 3CI0K 4CQ5A 2O7DA 5EYVA 3CRW1 4L6AA 5H8WA 1JSWA 1XWOA 1TJUA 4HGVA 3U19A 4MWOA 2O6YA 1T9HA 1U15A 1T6JA 1B8FA 2FENA 5EYTA 3E04A 4ADMA 3KDYA 3UNVA 4APAA 5M0JA 2O7EA 2QGAB 5F91A 1U16A 1FUQA 2PTSA 1U0LA 3NO9A 1Z4KA 2JAOA 1Q92A 2FUSA 1HY1A 2NYFA 3BWVA 3GZHA 4FLCA 2QVEA 1Z4JA 3R6QA 2YIIA 1GK2A 1J3UA 1GK3A 1YISA 1Z4PX 3CZOA 1YFEA 1VDKA 4APBA 4NSLA 2NYNA 1GKJA 5M0IA 2JAUA 1IW7D 1Y2MA 2VSFA 1Z4MA 2J91A 4L6CA 3U13A 3OCFA 5HW2A 4C5UA 4YIHA 4E88A 3F4RA 4MUMA 4YIKA 2VD6A 2JAWA 1XMDA 1K62A 1Z4QA 1XL7A 1HY0A 2FELA 3OCEA 1XL8A 2JARA 2YV5A 4EFCA 1FUPA 1DOFA 2PFMA 4NFLA 3TV2A 4MX2A 2PTRA 2RCNA 4C5RA 1Q5NA
chains in the Genus database with same CATH topology
5D6BA 3KDZA 2E9FA 4ADLA 2RJSA 3NZ4A 4C6GA 1EB4A 1W27A 1K7WA 1AUWA 3GTDA 1TJVA 2OHYA 1RE5A 2RJRA 5F92A 1DCNA 2HVGA 4C5SA 1C3UA 1KQ7A 1FURA 1TJWA 3C8TA 2PTQA 2O78A 4BABA 1T6PA 2O7FA 1I0AA 1FUOA 4BAAA 1C3CA 1YFMA 3R6VA 1TJ7A 1GKMA 3BHGA 4V2QA 3RD8A 3RRPA 2O7BA 3R6YA 3QBPA 4V2RA 2X75A 4EEIA 4FFXA 4CQ5A 2O7DA 5EYVA 1JSWA 1XWOA 1TJUA 4HGVA 2O6YA 1U15A 1T6JA 1B8FA 5EYTA 3E04A 4ADMA 3KDYA 3UNVA 4APAA 2O7EA 2QGAB 5F91A 1U16A 1FUQA 2PTSA 3NO9A 2FUSA 1HY1A 2NYFA 3GZHA 4FLCA 2QVEA 3R6QA 2YIIA 1GK2A 1J3UA 1GK3A 1YISA 3CZOA 1YFEA 1VDKA 4APBA 4NSLA 2NYNA 1GKJA 1Y2MA 2J91A 3OCFA 5HW2A 4C5UA 2VD6A 1K62A 1HY0A 3OCEA 4EFCA 1FUPA 1DOFA 2PFMA 3TV2A 4MX2A 2PTRA 4NLEA 4C5RA 1Q5NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D6B A;  3KDZ A;  2E9F A;  4ADL A;  2RJS A;  3NZ4 A;  4C6G A;  1EB4 A;  1W27 A;  1K7W A;  1AUW A;  3GTD A;  1TJV A;  2OHY A;  1RE5 A;  2RJR A;  5F92 A;  1DCN A;  2HVG A;  4C5S A;  1C3U A;  1KQ7 A;  1FUR A;  1TJW A;  3C8T A;  2PTQ A;  2O78 A;  4BAB A;  1T6P A;  2O7F A;  1I0A A;  1FUO A;  4BAA A;  1C3C A;  1YFM A;  3R6V A;  1TJ7 A;  1GKM A;  3BHG A;  4V2Q A;  3RD8 A;  3RRP A;  2O7B A;  3R6Y A;  3QBP A;  4V2R A;  2X75 A;  4EEI A;  4FFX A;  4CQ5 A;  2O7D A;  5EYV A;  1JSW A;  1XWO A;  1TJU A;  4HGV A;  2O6Y A;  1U15 A;  1T6J A;  1B8F A;  5EYT A;  3E04 A;  4ADM A;  3KDY A;  3UNV A;  4APA A;  2O7E A;  2QGA B;  5F91 A;  1U16 A;  1FUQ A;  2PTS A;  3NO9 A;  2FUS A;  1HY1 A;  2NYF A;  3GZH A;  4FLC A;  2QVE A;  3R6Q A;  2YII A;  1GK2 A;  1J3U A;  1GK3 A;  1YIS A;  3CZO A;  1YFE A;  1VDK A;  4APB A;  4NSL A;  2NYN A;  1GKJ A;  1Y2M A;  2J91 A;  3OCF A;  5HW2 A;  4C5U A;  2VD6 A;  1K62 A;  1HY0 A;  3OCE A;  4EFC A;  1FUP A;  1DOF A;  2PFM A;  3TV2 A;  4MX2 A;  2PTR A;  4NLE A;  4C5R A;  1Q5N A; 
#chains in the Genus database with same CATH topology
 5D6B A;  3F4T A;  3KDZ A;  2E9F A;  4ADL A;  1XMC A;  2RJS A;  1MH9 A;  4WNL A;  3NZ4 A;  2I7D A;  4C6G A;  1EB4 A;  1W27 A;  1K7W A;  1AUW A;  3GTD A;  1TJV A;  2OHY A;  1RE5 A;  2RJR A;  5F92 A;  4A15 A;  1DCN A;  2HVG A;  1Z4I A;  4C5S A;  1C3U A;  4L57 A;  1KQ7 A;  3F4S A;  1FUR A;  4NLE A;  1TJW A;  3C8T A;  2PTQ A;  2O78 A;  4BAB A;  2D28 C;  1T6P A;  2O7F A;  1Z4L A;  2VL7 A;  1I0A A;  1FUO A;  4BAA A;  1C3C A;  1YFM A;  3R6V A;  1XLY A;  1TJ7 A;  1GKM A;  3CRV A;  3BHG A;  4V2Q A;  3RD8 A;  3RRP A;  2D27 A;  2O7B A;  3R6Y A;  3QBP A;  4IQJ M;  4V2R A;  2X75 A;  1Q91 A;  4EEI A;  4FFX A;  3CI0 K;  4CQ5 A;  2O7D A;  5EYV A;  3CRW 1;  4L6A A;  5H8W A;  1JSW A;  1XWO A;  1TJU A;  4HGV A;  3U19 A;  4MWO A;  2O6Y A;  1T9H A;  1U15 A;  1T6J A;  1B8F A;  2FEN A;  5EYT A;  3E04 A;  4ADM A;  3KDY A;  3UNV A;  4APA A;  5M0J A;  2O7E A;  2QGA B;  5F91 A;  1U16 A;  1FUQ A;  2PTS A;  1U0L A;  3NO9 A;  1Z4K A;  2JAO A;  1Q92 A;  2FUS A;  1HY1 A;  2NYF A;  3BWV A;  3GZH A;  4FLC A;  2QVE A;  1Z4J A;  3R6Q A;  2YII A;  1GK2 A;  1J3U A;  1GK3 A;  1YIS A;  1Z4P X;  3CZO A;  1YFE A;  1VDK A;  4APB A;  4NSL A;  2NYN A;  1GKJ A;  5M0I A;  2JAU A;  1IW7 D;  1Y2M A;  2VSF A;  1Z4M A;  2J91 A;  4L6C A;  3U13 A;  3OCF A;  5HW2 A;  4C5U A;  4YIH A;  4E88 A;  3F4R A;  4MUM A;  4YIK A;  2VD6 A;  2JAW A;  1XMD A;  1K62 A;  1Z4Q A;  1XL7 A;  1HY0 A;  2FEL A;  3OCE A;  1XL8 A;  2JAR A;  2YV5 A;  4EFC A;  1FUP A;  1DOF A;  2PFM A;  4NFL A;  3TV2 A;  4MX2 A;  2PTR A;  2RCN A;  4C5R A;  1Q5N A; 
#chains in the Genus database with same CATH homology
 5D6B A;  3KDZ A;  2E9F A;  4ADL A;  2RJS A;  3NZ4 A;  4C6G A;  1EB4 A;  1W27 A;  1K7W A;  1AUW A;  3GTD A;  1TJV A;  2OHY A;  1RE5 A;  2RJR A;  5F92 A;  1DCN A;  2HVG A;  4C5S A;  1C3U A;  1KQ7 A;  1FUR A;  1TJW A;  3C8T A;  2PTQ A;  2O78 A;  4BAB A;  1T6P A;  2O7F A;  1I0A A;  1FUO A;  4BAA A;  1C3C A;  1YFM A;  3R6V A;  1TJ7 A;  1GKM A;  3BHG A;  4V2Q A;  3RD8 A;  3RRP A;  2O7B A;  3R6Y A;  3QBP A;  4V2R A;  2X75 A;  4EEI A;  4FFX A;  4CQ5 A;  2O7D A;  5EYV A;  1JSW A;  1XWO A;  1TJU A;  4HGV A;  2O6Y A;  1U15 A;  1T6J A;  1B8F A;  5EYT A;  3E04 A;  4ADM A;  3KDY A;  3UNV A;  4APA A;  2O7E A;  2QGA B;  5F91 A;  1U16 A;  1FUQ A;  2PTS A;  3NO9 A;  2FUS A;  1HY1 A;  2NYF A;  3GZH A;  4FLC A;  2QVE A;  3R6Q A;  2YII A;  1GK2 A;  1J3U A;  1GK3 A;  1YIS A;  3CZO A;  1YFE A;  1VDK A;  4APB A;  4NSL A;  2NYN A;  1GKJ A;  1Y2M A;  2J91 A;  3OCF A;  5HW2 A;  4C5U A;  2VD6 A;  1K62 A;  1HY0 A;  3OCE A;  4EFC A;  1FUP A;  1DOF A;  2PFM A;  3TV2 A;  4MX2 A;  2PTR A;  4NLE A;  4C5R A;  1Q5N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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