1JSWA

Native l-aspartate ammonia lyase
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
459
structure length
459
Chain Sequence
b'MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords L-ASPARTATE AMMONIA-LYASE
publication title The structure of L-aspartate ammonia-lyase from Escherichia coli.
pubmed doi rcsb
molecule tags Amino acid ammonia-lyase
total genus 139
structure length 459
sequence length 459
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 1997-02-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1jswA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1jswA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1jswA02
1C3CA 1C3UA 4FFXA 3TV2A 2X75A 1FURA 1TJWA 1YFEA 2QGAB 1HY1A 5EYVA 1K62A 2NYNA 3RRPA 2QVEA 1GK2A 4HGVA 3R6QA 1VDKA 1TJ7A 1AUWA 4MX2A 4EEIA 2OHYA 3UNVA 2FUSA 5D6BA 1W27A 4APBA 4C5UA 3GTDA 2PFMA 5HW2A 1KQ7A 1HY0A 3KDZA 3KDYA 1U15A 1JSWA 3OCEA 4BABA 1Q5NA 1RE5A 1FUPA 1FUQA 3BHGA 3OCFA 4ADMA 2NYFA 2J91A 1J3UA 1I0AA 4APAA 5F91A 4V2RA 4V2QA 1FUOA 1DOFA 3GZHA 1GKMA 1U16A 3CZOA 5F92A 1TJVA 1XWOA 3NZ4A 3R6YA 1B8FA 1YISA 2O6YA 3R6VA 2E9FA 2O7EA 3RD8A 2O7FA 4CQ5A 2PTSA 4C5RA 1GK3A 1YFMA 1EB4A 1GKJA 1K7WA 4C5SA 4EFCA 2HVGA 2PTRA 2YIIA 4BAAA 2RJRA 4ADLA 4NLEA 1T6JA 5EYTA 4C6GA 4FLCA 2O7BA 4NSLA 3C8TA 2VD6A 2O7DA 2PTQA 1DCNA 2RJSA 2O78A 3E04A 1TJUA 1Y2MA 3NO9A 3QBPA 1T6PA
chains in the Genus database with same CATH superfamily
1C3CA 1XLYA 3U19A 1C3UA 4FFXA 3TV2A 1Z4PX 1Z4MA 2X75A 1FURA 3BWVA 1TJWA 1YFEA 4IQJM 2QGAB 1HY1A 5EYVA 1K62A 1Z4IA 2NYNA 1Z4LA 3RRPA 2QVEA 1GK2A 4HGVA 3R6QA 2D27A 1VDKA 1TJ7A 1AUWA 4MX2A 4EEIA 2OHYA 3UNVA 2VSFA 4WNLA 2FUSA 2JAWA 2YV5A 5D6BA 1W27A 4APBA 4C5UA 3GTDA 2PFMA 5M0JA 4E88A 5HW2A 2JAUA 1KQ7A 1HY0A 2JARA 4L6AA 3KDZA 1U0LA 3KDYA 1U15A 2D28C 1JSWA 3OCEA 4BABA 1MH9A 1Q5NA 1RE5A 4YIKA 5H8WA 2JAOA 1FUPA 1FUQA 3BHGA 3OCFA 4ADMA 2NYFA 1XMCA 1XL7A 2RCNA 2J91A 1J3UA 1I0AA 4APAA 2FENA 5F91A 4V2RA 4V2QA 1FUOA 3F4SA 1DOFA 3GZHA 1GKMA 3CI0K 1U16A 3CZOA 4MUMA 4NFLA 5F92A 1TJVA 1XWOA 5M0IA 3NZ4A 3R6YA 4L6CA 1B8FA 1YISA 1T9HA 1Q91A 2O6YA 1IW7D 4MWOA 3R6VA 2E9FA 2O7EA 1Z4JA 3RD8A 1Q92A 2O7FA 4CQ5A 2PTSA 4C5RA 1YFMA 1GK3A 1EB4A 3U13A 1XMDA 1GKJA 1K7WA 4C5SA 3CRW1 4EFCA 1Z4KA 2HVGA 2PTRA 2YIIA 4BAAA 2VL7A 2RJRA 3CRVA 4ADLA 4YIHA 4NLEA 4L57A 1T6JA 3F4RA 1XL8A 4A15A 5EYTA 4C6GA 4FLCA 2I7DA 2FELA 2O7BA 4NSLA 3C8TA 2VD6A 1Z4QA 2O7DA 2PTQA 1DCNA 2RJSA 2O78A 3E04A 1TJUA 1Y2MA 3F4TA 3NO9A 3QBPA 1T6PA
chains in the Genus database with same CATH topology
1C3CA 1C3UA 4FFXA 3TV2A 2X75A 1FURA 1TJWA 1YFEA 2QGAB 1HY1A 5EYVA 1K62A 2NYNA 3RRPA 2QVEA 1GK2A 4HGVA 3R6QA 1VDKA 1TJ7A 1AUWA 4MX2A 4EEIA 2OHYA 3UNVA 2FUSA 5D6BA 1W27A 4APBA 4C5UA 3GTDA 2PFMA 5HW2A 1KQ7A 1HY0A 3KDZA 3KDYA 1U15A 1JSWA 3OCEA 4BABA 1Q5NA 1RE5A 1FUPA 1FUQA 3BHGA 3OCFA 4ADMA 2NYFA 2J91A 1J3UA 1I0AA 4APAA 5F91A 4V2RA 4V2QA 1FUOA 1DOFA 3GZHA 1GKMA 1U16A 3CZOA 5F92A 1TJVA 1XWOA 3NZ4A 3R6YA 1B8FA 1YISA 2O6YA 3R6VA 2E9FA 2O7EA 3RD8A 2O7FA 4CQ5A 2PTSA 4C5RA 1GK3A 1YFMA 1EB4A 1GKJA 1K7WA 4C5SA 4EFCA 2HVGA 2PTRA 2YIIA 4BAAA 2RJRA 4ADLA 4NLEA 1T6JA 5EYTA 4C6GA 4FLCA 2O7BA 4NSLA 3C8TA 2VD6A 2O7DA 2PTQA 1DCNA 2RJSA 2O78A 3E04A 1TJUA 1Y2MA 3NO9A 3QBPA 1T6PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3C A;  1C3U A;  4FFX A;  3TV2 A;  2X75 A;  1FUR A;  1TJW A;  1YFE A;  2QGA B;  1HY1 A;  5EYV A;  1K62 A;  2NYN A;  3RRP A;  2QVE A;  1GK2 A;  4HGV A;  3R6Q A;  1VDK A;  1TJ7 A;  1AUW A;  4MX2 A;  4EEI A;  2OHY A;  3UNV A;  2FUS A;  5D6B A;  1W27 A;  4APB A;  4C5U A;  3GTD A;  2PFM A;  5HW2 A;  1KQ7 A;  1HY0 A;  3KDZ A;  3KDY A;  1U15 A;  1JSW A;  3OCE A;  4BAB A;  1Q5N A;  1RE5 A;  1FUP A;  1FUQ A;  3BHG A;  3OCF A;  4ADM A;  2NYF A;  2J91 A;  1J3U A;  1I0A A;  4APA A;  5F91 A;  4V2R A;  4V2Q A;  1FUO A;  1DOF A;  3GZH A;  1GKM A;  1U16 A;  3CZO A;  5F92 A;  1TJV A;  1XWO A;  3NZ4 A;  3R6Y A;  1B8F A;  1YIS A;  2O6Y A;  3R6V A;  2E9F A;  2O7E A;  3RD8 A;  2O7F A;  4CQ5 A;  2PTS A;  4C5R A;  1GK3 A;  1YFM A;  1EB4 A;  1GKJ A;  1K7W A;  4C5S A;  4EFC A;  2HVG A;  2PTR A;  2YII A;  4BAA A;  2RJR A;  4ADL A;  4NLE A;  1T6J A;  5EYT A;  4C6G A;  4FLC A;  2O7B A;  4NSL A;  3C8T A;  2VD6 A;  2O7D A;  2PTQ A;  1DCN A;  2RJS A;  2O78 A;  3E04 A;  1TJU A;  1Y2M A;  3NO9 A;  3QBP A;  1T6P A; 
#chains in the Genus database with same CATH topology
 1C3C A;  1XLY A;  3U19 A;  1C3U A;  4FFX A;  3TV2 A;  1Z4P X;  1Z4M A;  2X75 A;  1FUR A;  3BWV A;  1TJW A;  1YFE A;  4IQJ M;  2QGA B;  1HY1 A;  5EYV A;  1K62 A;  1Z4I A;  2NYN A;  1Z4L A;  3RRP A;  2QVE A;  1GK2 A;  4HGV A;  3R6Q A;  2D27 A;  1VDK A;  1TJ7 A;  1AUW A;  4MX2 A;  4EEI A;  2OHY A;  3UNV A;  2VSF A;  4WNL A;  2FUS A;  2JAW A;  2YV5 A;  5D6B A;  1W27 A;  4APB A;  4C5U A;  3GTD A;  2PFM A;  5M0J A;  4E88 A;  5HW2 A;  2JAU A;  1KQ7 A;  1HY0 A;  2JAR A;  4L6A A;  3KDZ A;  1U0L A;  3KDY A;  1U15 A;  2D28 C;  1JSW A;  3OCE A;  4BAB A;  1MH9 A;  1Q5N A;  1RE5 A;  4YIK A;  5H8W A;  2JAO A;  1FUP A;  1FUQ A;  3BHG A;  3OCF A;  4ADM A;  2NYF A;  1XMC A;  1XL7 A;  2RCN A;  2J91 A;  1J3U A;  1I0A A;  4APA A;  2FEN A;  5F91 A;  4V2R A;  4V2Q A;  1FUO A;  3F4S A;  1DOF A;  3GZH A;  1GKM A;  3CI0 K;  1U16 A;  3CZO A;  4MUM A;  4NFL A;  5F92 A;  1TJV A;  1XWO A;  5M0I A;  3NZ4 A;  3R6Y A;  4L6C A;  1B8F A;  1YIS A;  1T9H A;  1Q91 A;  2O6Y A;  1IW7 D;  4MWO A;  3R6V A;  2E9F A;  2O7E A;  1Z4J A;  3RD8 A;  1Q92 A;  2O7F A;  4CQ5 A;  2PTS A;  4C5R A;  1YFM A;  1GK3 A;  1EB4 A;  3U13 A;  1XMD A;  1GKJ A;  1K7W A;  4C5S A;  3CRW 1;  4EFC A;  1Z4K A;  2HVG A;  2PTR A;  2YII A;  4BAA A;  2VL7 A;  2RJR A;  3CRV A;  4ADL A;  4YIH A;  4NLE A;  4L57 A;  1T6J A;  3F4R A;  1XL8 A;  4A15 A;  5EYT A;  4C6G A;  4FLC A;  2I7D A;  2FEL A;  2O7B A;  4NSL A;  3C8T A;  2VD6 A;  1Z4Q A;  2O7D A;  2PTQ A;  1DCN A;  2RJS A;  2O78 A;  3E04 A;  1TJU A;  1Y2M A;  3F4T A;  3NO9 A;  3QBP A;  1T6P A; 
#chains in the Genus database with same CATH homology
 1C3C A;  1C3U A;  4FFX A;  3TV2 A;  2X75 A;  1FUR A;  1TJW A;  1YFE A;  2QGA B;  1HY1 A;  5EYV A;  1K62 A;  2NYN A;  3RRP A;  2QVE A;  1GK2 A;  4HGV A;  3R6Q A;  1VDK A;  1TJ7 A;  1AUW A;  4MX2 A;  4EEI A;  2OHY A;  3UNV A;  2FUS A;  5D6B A;  1W27 A;  4APB A;  4C5U A;  3GTD A;  2PFM A;  5HW2 A;  1KQ7 A;  1HY0 A;  3KDZ A;  3KDY A;  1U15 A;  1JSW A;  3OCE A;  4BAB A;  1Q5N A;  1RE5 A;  1FUP A;  1FUQ A;  3BHG A;  3OCF A;  4ADM A;  2NYF A;  2J91 A;  1J3U A;  1I0A A;  4APA A;  5F91 A;  4V2R A;  4V2Q A;  1FUO A;  1DOF A;  3GZH A;  1GKM A;  1U16 A;  3CZO A;  5F92 A;  1TJV A;  1XWO A;  3NZ4 A;  3R6Y A;  1B8F A;  1YIS A;  2O6Y A;  3R6V A;  2E9F A;  2O7E A;  3RD8 A;  2O7F A;  4CQ5 A;  2PTS A;  4C5R A;  1GK3 A;  1YFM A;  1EB4 A;  1GKJ A;  1K7W A;  4C5S A;  4EFC A;  2HVG A;  2PTR A;  2YII A;  4BAA A;  2RJR A;  4ADL A;  4NLE A;  1T6J A;  5EYT A;  4C6G A;  4FLC A;  2O7B A;  4NSL A;  3C8T A;  2VD6 A;  2O7D A;  2PTQ A;  1DCN A;  2RJS A;  2O78 A;  3E04 A;  1TJU A;  1Y2M A;  3NO9 A;  3QBP A;  1T6P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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