1JSWA

Native l-aspartate ammonia lyase
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
459
structure length
459
Chain Sequence
MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords L-ASPARTATE AMMONIA-LYASE
publication title The structure of L-aspartate ammonia-lyase from Escherichia coli.
pubmed doi rcsb
molecule tags Amino acid ammonia-lyase
total genus 139
structure length 459
sequence length 459
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 1997-02-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1jswA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1jswA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1jswA02
3NZ4A 4V2RA 4C6GA 3OCEA 5F91A 2PFMA 1T6PA 2X75A 3OCFA 1Y2MA 1U16A 2PTQA 1T6JA 2FUSA 1GK2A 1JSWA 4BAAA 3BHGA 1GK3A 3RRPA 5EYVA 3R6QA 1C3CA 1Q5NA 2OHYA 1TJVA 1DCNA 1TJ7A 1YISA 1FUOA 4FLCA 3C8TA 1VDKA 1K7WA 5F92A 5D6BA 1YFEA 5EYTA 2NYFA 1EB4A 2O7DA 1I0AA 2NYNA 4EEIA 2O7BA 3UNVA 3CZOA 2RJSA 2O6YA 4HGVA 3KDYA 1YFMA 3R6VA 3E04A 4APBA 3R6YA 3QBPA 2YIIA 5HW2A 1U15A 4ADMA 4NLEA 1K62A 2PTSA 1DOFA 3RD8A 4BABA 4APAA 4EFCA 1TJWA 4V2QA 2J91A 3TV2A 4FFXA 1HY1A 2E9FA 2O7EA 1FUPA 3NO9A 4ADLA 3GTDA 1FURA 1B8FA 4NSLA 1KQ7A 1GKJA 1W27A 1J3UA 2O7FA 4CQ5A 4MX2A 1FUQA 3GZHA 2RJRA 2O78A 2VD6A 1AUWA 3KDZA 2HVGA 2QGAB 4C5UA 1HY0A 2PTRA 1RE5A 1GKMA 2QVEA 1TJUA 1C3UA 4C5RA 4C5SA 1XWOA
chains in the Genus database with same CATH superfamily
2FELA 2FENA 2VSFA 3NZ4A 4V2RA 4C6GA 5H8WA 3OCEA 5F91A 2PFMA 1T6PA 2X75A 3OCFA 3F4SA 4E88A 1Q91A 4IQJM 1Y2MA 1U16A 1MH9A 2PTQA 1T6JA 2FUSA 1GK2A 1XL7A 1JSWA 1Z4JA 4BAAA 1U0LA 2JARA 3BHGA 1GK3A 1Q92A 1Z4MA 3RRPA 5EYVA 3R6QA 1C3CA 1T9HA 1XMCA 1Q5NA 2OHYA 1Z4QA 3F4TA 1TJVA 4L6CA 1DCNA 1TJ7A 1YISA 1FUOA 4FLCA 3C8TA 1Z4PX 1VDKA 1Z4KA 1K7WA 5F92A 5D6BA 1YFEA 5EYTA 4MUMA 2D28C 2NYFA 1EB4A 2RCNA 2O7DA 1I0AA 4L57A 4YIKA 2NYNA 4EEIA 2O7BA 1XL8A 3UNVA 2JAWA 3CZOA 2D27A 2RJSA 5M0JA 2YV5A 4A15A 2O6YA 4HGVA 3KDYA 4NFLA 1YFMA 3R6VA 3E04A 4APBA 3R6YA 3QBPA 2YIIA 1Z4LA 4YIHA 5HW2A 1U15A 4ADMA 4WNLA 4NLEA 1K62A 2PTSA 1DOFA 3CI0K 2VL7A 3U13A 3RD8A 4BABA 4APAA 4EFCA 1TJWA 4V2QA 2J91A 3TV2A 4FFXA 1HY1A 2E9FA 2JAUA 4L6AA 2O7EA 1FUPA 3NO9A 4ADLA 3GTDA 1FURA 1B8FA 4NSLA 1KQ7A 5M0IA 2JAOA 1GKJA 1XLYA 1W27A 1J3UA 2O7FA 3BWVA 4CQ5A 4MX2A 1FUQA 3GZHA 2RJRA 3CRVA 2O78A 2VD6A 2I7DA 1AUWA 3KDZA 2HVGA 2QGAB 4C5UA 1HY0A 2PTRA 1RE5A 1GKMA 2QVEA 3CRW1 1TJUA 1C3UA 3F4RA 1IW7D 4C5RA 1XMDA 4C5SA 3U19A 1XWOA 1Z4IA 4MWOA
chains in the Genus database with same CATH topology
3NZ4A 4V2RA 4C6GA 3OCEA 5F91A 2PFMA 1T6PA 2X75A 3OCFA 1Y2MA 1U16A 2PTQA 1T6JA 2FUSA 1GK2A 1JSWA 4BAAA 3BHGA 1GK3A 3RRPA 5EYVA 3R6QA 1C3CA 1Q5NA 2OHYA 1TJVA 1DCNA 1TJ7A 1YISA 1FUOA 4FLCA 3C8TA 1VDKA 1K7WA 5F92A 5D6BA 1YFEA 5EYTA 2NYFA 1EB4A 2O7DA 1I0AA 2NYNA 4EEIA 2O7BA 3UNVA 3CZOA 2RJSA 2O6YA 4HGVA 3KDYA 1YFMA 3R6VA 3E04A 4APBA 3R6YA 3QBPA 2YIIA 5HW2A 1U15A 4ADMA 4NLEA 1K62A 2PTSA 1DOFA 3RD8A 4BABA 4APAA 4EFCA 1TJWA 4V2QA 2J91A 3TV2A 4FFXA 1HY1A 2E9FA 2O7EA 1FUPA 3NO9A 4ADLA 3GTDA 1FURA 1B8FA 4NSLA 1KQ7A 1GKJA 1W27A 1J3UA 2O7FA 4CQ5A 4MX2A 1FUQA 3GZHA 2RJRA 2O78A 2VD6A 1AUWA 3KDZA 2HVGA 2QGAB 4C5UA 1HY0A 2PTRA 1RE5A 1GKMA 2QVEA 1TJUA 1C3UA 4C5RA 4C5SA 1XWOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NZ4 A;  4V2R A;  4C6G A;  3OCE A;  5F91 A;  2PFM A;  1T6P A;  2X75 A;  3OCF A;  1Y2M A;  1U16 A;  2PTQ A;  1T6J A;  2FUS A;  1GK2 A;  1JSW A;  4BAA A;  3BHG A;  1GK3 A;  3RRP A;  5EYV A;  3R6Q A;  1C3C A;  1Q5N A;  2OHY A;  1TJV A;  1DCN A;  1TJ7 A;  1YIS A;  1FUO A;  4FLC A;  3C8T A;  1VDK A;  1K7W A;  5F92 A;  5D6B A;  1YFE A;  5EYT A;  2NYF A;  1EB4 A;  2O7D A;  1I0A A;  2NYN A;  4EEI A;  2O7B A;  3UNV A;  3CZO A;  2RJS A;  2O6Y A;  4HGV A;  3KDY A;  1YFM A;  3R6V A;  3E04 A;  4APB A;  3R6Y A;  3QBP A;  2YII A;  5HW2 A;  1U15 A;  4ADM A;  4NLE A;  1K62 A;  2PTS A;  1DOF A;  3RD8 A;  4BAB A;  4APA A;  4EFC A;  1TJW A;  4V2Q A;  2J91 A;  3TV2 A;  4FFX A;  1HY1 A;  2E9F A;  2O7E A;  1FUP A;  3NO9 A;  4ADL A;  3GTD A;  1FUR A;  1B8F A;  4NSL A;  1KQ7 A;  1GKJ A;  1W27 A;  1J3U A;  2O7F A;  4CQ5 A;  4MX2 A;  1FUQ A;  3GZH A;  2RJR A;  2O78 A;  2VD6 A;  1AUW A;  3KDZ A;  2HVG A;  2QGA B;  4C5U A;  1HY0 A;  2PTR A;  1RE5 A;  1GKM A;  2QVE A;  1TJU A;  1C3U A;  4C5R A;  4C5S A;  1XWO A; 
#chains in the Genus database with same CATH topology
 2FEL A;  2FEN A;  2VSF A;  3NZ4 A;  4V2R A;  4C6G A;  5H8W A;  3OCE A;  5F91 A;  2PFM A;  1T6P A;  2X75 A;  3OCF A;  3F4S A;  4E88 A;  1Q91 A;  4IQJ M;  1Y2M A;  1U16 A;  1MH9 A;  2PTQ A;  1T6J A;  2FUS A;  1GK2 A;  1XL7 A;  1JSW A;  1Z4J A;  4BAA A;  1U0L A;  2JAR A;  3BHG A;  1GK3 A;  1Q92 A;  1Z4M A;  3RRP A;  5EYV A;  3R6Q A;  1C3C A;  1T9H A;  1XMC A;  1Q5N A;  2OHY A;  1Z4Q A;  3F4T A;  1TJV A;  4L6C A;  1DCN A;  1TJ7 A;  1YIS A;  1FUO A;  4FLC A;  3C8T A;  1Z4P X;  1VDK A;  1Z4K A;  1K7W A;  5F92 A;  5D6B A;  1YFE A;  5EYT A;  4MUM A;  2D28 C;  2NYF A;  1EB4 A;  2RCN A;  2O7D A;  1I0A A;  4L57 A;  4YIK A;  2NYN A;  4EEI A;  2O7B A;  1XL8 A;  3UNV A;  2JAW A;  3CZO A;  2D27 A;  2RJS A;  5M0J A;  2YV5 A;  4A15 A;  2O6Y A;  4HGV A;  3KDY A;  4NFL A;  1YFM A;  3R6V A;  3E04 A;  4APB A;  3R6Y A;  3QBP A;  2YII A;  1Z4L A;  4YIH A;  5HW2 A;  1U15 A;  4ADM A;  4WNL A;  4NLE A;  1K62 A;  2PTS A;  1DOF A;  3CI0 K;  2VL7 A;  3U13 A;  3RD8 A;  4BAB A;  4APA A;  4EFC A;  1TJW A;  4V2Q A;  2J91 A;  3TV2 A;  4FFX A;  1HY1 A;  2E9F A;  2JAU A;  4L6A A;  2O7E A;  1FUP A;  3NO9 A;  4ADL A;  3GTD A;  1FUR A;  1B8F A;  4NSL A;  1KQ7 A;  5M0I A;  2JAO A;  1GKJ A;  1XLY A;  1W27 A;  1J3U A;  2O7F A;  3BWV A;  4CQ5 A;  4MX2 A;  1FUQ A;  3GZH A;  2RJR A;  3CRV A;  2O78 A;  2VD6 A;  2I7D A;  1AUW A;  3KDZ A;  2HVG A;  2QGA B;  4C5U A;  1HY0 A;  2PTR A;  1RE5 A;  1GKM A;  2QVE A;  3CRW 1;  1TJU A;  1C3U A;  3F4R A;  1IW7 D;  4C5R A;  1XMD A;  4C5S A;  3U19 A;  1XWO A;  1Z4I A;  4MWO A; 
#chains in the Genus database with same CATH homology
 3NZ4 A;  4V2R A;  4C6G A;  3OCE A;  5F91 A;  2PFM A;  1T6P A;  2X75 A;  3OCF A;  1Y2M A;  1U16 A;  2PTQ A;  1T6J A;  2FUS A;  1GK2 A;  1JSW A;  4BAA A;  3BHG A;  1GK3 A;  3RRP A;  5EYV A;  3R6Q A;  1C3C A;  1Q5N A;  2OHY A;  1TJV A;  1DCN A;  1TJ7 A;  1YIS A;  1FUO A;  4FLC A;  3C8T A;  1VDK A;  1K7W A;  5F92 A;  5D6B A;  1YFE A;  5EYT A;  2NYF A;  1EB4 A;  2O7D A;  1I0A A;  2NYN A;  4EEI A;  2O7B A;  3UNV A;  3CZO A;  2RJS A;  2O6Y A;  4HGV A;  3KDY A;  1YFM A;  3R6V A;  3E04 A;  4APB A;  3R6Y A;  3QBP A;  2YII A;  5HW2 A;  1U15 A;  4ADM A;  4NLE A;  1K62 A;  2PTS A;  1DOF A;  3RD8 A;  4BAB A;  4APA A;  4EFC A;  1TJW A;  4V2Q A;  2J91 A;  3TV2 A;  4FFX A;  1HY1 A;  2E9F A;  2O7E A;  1FUP A;  3NO9 A;  4ADL A;  3GTD A;  1FUR A;  1B8F A;  4NSL A;  1KQ7 A;  1GKJ A;  1W27 A;  1J3U A;  2O7F A;  4CQ5 A;  4MX2 A;  1FUQ A;  3GZH A;  2RJR A;  2O78 A;  2VD6 A;  1AUW A;  3KDZ A;  2HVG A;  2QGA B;  4C5U A;  1HY0 A;  2PTR A;  1RE5 A;  1GKM A;  2QVE A;  1TJU A;  1C3U A;  4C5R A;  4C5S A;  1XWO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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