1JSWA

Native l-aspartate ammonia lyase
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
459
structure length
459
Chain Sequence
MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Amino acid ammonia-lyase
publication title The structure of L-aspartate ammonia-lyase from Escherichia coli.
pubmed doi rcsb
molecule keywords L-ASPARTATE AMMONIA-LYASE
total genus 139
structure length 459
sequence length 459
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 1997-02-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1jswA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1jswA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1jswA02
1TJWA 4C6GA 4C5RA 5D6BA 2OHYA 1FUQA 2O7EA 2RJRA 3UNVA 4V2RA 3KDYA 2O7BA 1GK2A 4FFXA 1FUOA 1U15A 4FLCA 1C3CA 1I0AA 4NLEA 2J91A 1KQ7A 4APBA 1J3UA 3NO9A 1B8FA 1AUWA 2VD6A 3GTDA 2QGAB 1HY0A 1TJUA 4ADLA 1K7WA 1GKMA 1YISA 1GKJA 1DCNA 1Y2MA 1Q5NA 5HW2A 1T6PA 3RRPA 4C5SA 1K62A 2YIIA 1JSWA 2X75A 3NZ4A 3E04A 2O78A 2RJSA 3QBPA 1C3UA 3OCFA 4C5UA 1FUPA 5EYVA 1YFEA 4APAA 3RD8A 1T6JA 2QVEA 5F92A 1W27A 2O7DA 2PTQA 2HVGA 2NYNA 2E9FA 3R6VA 4CQ5A 1RE5A 3CZOA 1EB4A 5EYTA 1XWOA 3R6YA 3R6QA 2NYFA 4EFCA 4BABA 4V2QA 1HY1A 4ADMA 4NSLA 2FUSA 1FURA 3OCEA 3C8TA 2PFMA 4HGVA 4MX2A 1VDKA 5F91A 2O6YA 1U16A 3BHGA 2PTSA 2O7FA 4BAAA 1TJ7A 3TV2A 3KDZA 1DOFA 3GZHA 1GK3A 4EEIA 1TJVA 2PTRA 1YFMA
chains in the Genus database with same CATH superfamily
1TJWA 1Z4LA 4YIHA 4C6GA 3CRVA 4C5RA 5D6BA 4IQJM 2OHYA 5M0JA 1T9HA 2I7DA 4A15A 1XL8A 1FUQA 1XL7A 3U13A 2O7EA 2RJRA 3UNVA 1MH9A 4V2RA 3KDYA 2O7BA 1GK2A 4E88A 4FFXA 3F4RA 1IW7D 1FUOA 1Z4IA 1U15A 4FLCA 1C3CA 1I0AA 4NLEA 2J91A 1KQ7A 5H8WA 4APBA 3F4SA 1J3UA 3BWVA 3NO9A 2JAWA 4L6AA 1Z4PX 1B8FA 1AUWA 2VD6A 3GTDA 2QGAB 1HY0A 1TJUA 4ADLA 1K7WA 1GKMA 1YISA 2FENA 1GKJA 1DCNA 4WNLA 1Y2MA 1Q5NA 2VSFA 5HW2A 1T6PA 3F4TA 3RRPA 4C5SA 1K62A 2YIIA 1JSWA 2X75A 1Z4JA 3E04A 3NZ4A 2O78A 2RJSA 3QBPA 1C3UA 3OCFA 4C5UA 1FUPA 1Q92A 5EYVA 1YFEA 4APAA 2FELA 3RD8A 2D28C 1XMDA 1T6JA 2JAOA 2QVEA 5F92A 1Q91A 1W27A 2O7DA 2PTQA 2HVGA 2NYNA 1U0LA 2E9FA 3R6VA 4CQ5A 1RE5A 4L57A 1EB4A 3CZOA 5EYTA 1XWOA 3R6YA 3R6QA 2NYFA 4EFCA 4BABA 4L6CA 2RCNA 4V2QA 1HY1A 4ADMA 2D27A 2FUSA 4NSLA 1FURA 3OCEA 3C8TA 2PFMA 4HGVA 4MX2A 1VDKA 4YIKA 5F91A 2O6YA 3U19A 4NFLA 4MUMA 1U16A 3BHGA 2JARA 2PTSA 1Z4QA 3CI0K 3CRW1 2YV5A 2O7FA 4MWOA 1Z4MA 4BAAA 1TJ7A 3TV2A 3KDZA 1DOFA 2JAUA 2VL7A 3GZHA 1XLYA 1XMCA 1GK3A 4EEIA 1Z4KA 5M0IA 1TJVA 2PTRA 1YFMA
chains in the Genus database with same CATH topology
1TJWA 4C6GA 4C5RA 5D6BA 2OHYA 1FUQA 2O7EA 2RJRA 3UNVA 4V2RA 3KDYA 2O7BA 1GK2A 4FFXA 1FUOA 1U15A 4FLCA 1C3CA 1I0AA 4NLEA 2J91A 1KQ7A 4APBA 1J3UA 3NO9A 1B8FA 1AUWA 2VD6A 3GTDA 2QGAB 1HY0A 1TJUA 4ADLA 1K7WA 1GKMA 1YISA 1GKJA 1DCNA 1Y2MA 1Q5NA 5HW2A 1T6PA 3RRPA 4C5SA 1K62A 2YIIA 1JSWA 2X75A 3NZ4A 3E04A 2O78A 2RJSA 3QBPA 1C3UA 3OCFA 4C5UA 1FUPA 5EYVA 1YFEA 4APAA 3RD8A 1T6JA 2QVEA 5F92A 1W27A 2O7DA 2PTQA 2HVGA 2NYNA 2E9FA 3R6VA 4CQ5A 1RE5A 3CZOA 1EB4A 5EYTA 1XWOA 3R6YA 3R6QA 2NYFA 4EFCA 4BABA 4V2QA 1HY1A 4ADMA 4NSLA 2FUSA 1FURA 3OCEA 3C8TA 2PFMA 4HGVA 4MX2A 1VDKA 5F91A 2O6YA 1U16A 3BHGA 2PTSA 2O7FA 4BAAA 1TJ7A 3TV2A 3KDZA 1DOFA 3GZHA 1GK3A 4EEIA 1TJVA 2PTRA 1YFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TJW A;  4C6G A;  4C5R A;  5D6B A;  2OHY A;  1FUQ A;  2O7E A;  2RJR A;  3UNV A;  4V2R A;  3KDY A;  2O7B A;  1GK2 A;  4FFX A;  1FUO A;  1U15 A;  4FLC A;  1C3C A;  1I0A A;  4NLE A;  2J91 A;  1KQ7 A;  4APB A;  1J3U A;  3NO9 A;  1B8F A;  1AUW A;  2VD6 A;  3GTD A;  2QGA B;  1HY0 A;  1TJU A;  4ADL A;  1K7W A;  1GKM A;  1YIS A;  1GKJ A;  1DCN A;  1Y2M A;  1Q5N A;  5HW2 A;  1T6P A;  3RRP A;  4C5S A;  1K62 A;  2YII A;  1JSW A;  2X75 A;  3NZ4 A;  3E04 A;  2O78 A;  2RJS A;  3QBP A;  1C3U A;  3OCF A;  4C5U A;  1FUP A;  5EYV A;  1YFE A;  4APA A;  3RD8 A;  1T6J A;  2QVE A;  5F92 A;  1W27 A;  2O7D A;  2PTQ A;  2HVG A;  2NYN A;  2E9F A;  3R6V A;  4CQ5 A;  1RE5 A;  3CZO A;  1EB4 A;  5EYT A;  1XWO A;  3R6Y A;  3R6Q A;  2NYF A;  4EFC A;  4BAB A;  4V2Q A;  1HY1 A;  4ADM A;  4NSL A;  2FUS A;  1FUR A;  3OCE A;  3C8T A;  2PFM A;  4HGV A;  4MX2 A;  1VDK A;  5F91 A;  2O6Y A;  1U16 A;  3BHG A;  2PTS A;  2O7F A;  4BAA A;  1TJ7 A;  3TV2 A;  3KDZ A;  1DOF A;  3GZH A;  1GK3 A;  4EEI A;  1TJV A;  2PTR A;  1YFM A; 
#chains in the Genus database with same CATH topology
 1TJW A;  1Z4L A;  4YIH A;  4C6G A;  3CRV A;  4C5R A;  5D6B A;  4IQJ M;  2OHY A;  5M0J A;  1T9H A;  2I7D A;  4A15 A;  1XL8 A;  1FUQ A;  1XL7 A;  3U13 A;  2O7E A;  2RJR A;  3UNV A;  1MH9 A;  4V2R A;  3KDY A;  2O7B A;  1GK2 A;  4E88 A;  4FFX A;  3F4R A;  1IW7 D;  1FUO A;  1Z4I A;  1U15 A;  4FLC A;  1C3C A;  1I0A A;  4NLE A;  2J91 A;  1KQ7 A;  5H8W A;  4APB A;  3F4S A;  1J3U A;  3BWV A;  3NO9 A;  2JAW A;  4L6A A;  1Z4P X;  1B8F A;  1AUW A;  2VD6 A;  3GTD A;  2QGA B;  1HY0 A;  1TJU A;  4ADL A;  1K7W A;  1GKM A;  1YIS A;  2FEN A;  1GKJ A;  1DCN A;  4WNL A;  1Y2M A;  1Q5N A;  2VSF A;  5HW2 A;  1T6P A;  3F4T A;  3RRP A;  4C5S A;  1K62 A;  2YII A;  1JSW A;  2X75 A;  1Z4J A;  3E04 A;  3NZ4 A;  2O78 A;  2RJS A;  3QBP A;  1C3U A;  3OCF A;  4C5U A;  1FUP A;  1Q92 A;  5EYV A;  1YFE A;  4APA A;  2FEL A;  3RD8 A;  2D28 C;  1XMD A;  1T6J A;  2JAO A;  2QVE A;  5F92 A;  1Q91 A;  1W27 A;  2O7D A;  2PTQ A;  2HVG A;  2NYN A;  1U0L A;  2E9F A;  3R6V A;  4CQ5 A;  1RE5 A;  4L57 A;  1EB4 A;  3CZO A;  5EYT A;  1XWO A;  3R6Y A;  3R6Q A;  2NYF A;  4EFC A;  4BAB A;  4L6C A;  2RCN A;  4V2Q A;  1HY1 A;  4ADM A;  2D27 A;  2FUS A;  4NSL A;  1FUR A;  3OCE A;  3C8T A;  2PFM A;  4HGV A;  4MX2 A;  1VDK A;  4YIK A;  5F91 A;  2O6Y A;  3U19 A;  4NFL A;  4MUM A;  1U16 A;  3BHG A;  2JAR A;  2PTS A;  1Z4Q A;  3CI0 K;  3CRW 1;  2YV5 A;  2O7F A;  4MWO A;  1Z4M A;  4BAA A;  1TJ7 A;  3TV2 A;  3KDZ A;  1DOF A;  2JAU A;  2VL7 A;  3GZH A;  1XLY A;  1XMC A;  1GK3 A;  4EEI A;  1Z4K A;  5M0I A;  1TJV A;  2PTR A;  1YFM A; 
#chains in the Genus database with same CATH homology
 1TJW A;  4C6G A;  4C5R A;  5D6B A;  2OHY A;  1FUQ A;  2O7E A;  2RJR A;  3UNV A;  4V2R A;  3KDY A;  2O7B A;  1GK2 A;  4FFX A;  1FUO A;  1U15 A;  4FLC A;  1C3C A;  1I0A A;  4NLE A;  2J91 A;  1KQ7 A;  4APB A;  1J3U A;  3NO9 A;  1B8F A;  1AUW A;  2VD6 A;  3GTD A;  2QGA B;  1HY0 A;  1TJU A;  4ADL A;  1K7W A;  1GKM A;  1YIS A;  1GKJ A;  1DCN A;  1Y2M A;  1Q5N A;  5HW2 A;  1T6P A;  3RRP A;  4C5S A;  1K62 A;  2YII A;  1JSW A;  2X75 A;  3NZ4 A;  3E04 A;  2O78 A;  2RJS A;  3QBP A;  1C3U A;  3OCF A;  4C5U A;  1FUP A;  5EYV A;  1YFE A;  4APA A;  3RD8 A;  1T6J A;  2QVE A;  5F92 A;  1W27 A;  2O7D A;  2PTQ A;  2HVG A;  2NYN A;  2E9F A;  3R6V A;  4CQ5 A;  1RE5 A;  3CZO A;  1EB4 A;  5EYT A;  1XWO A;  3R6Y A;  3R6Q A;  2NYF A;  4EFC A;  4BAB A;  4V2Q A;  1HY1 A;  4ADM A;  4NSL A;  2FUS A;  1FUR A;  3OCE A;  3C8T A;  2PFM A;  4HGV A;  4MX2 A;  1VDK A;  5F91 A;  2O6Y A;  1U16 A;  3BHG A;  2PTS A;  2O7F A;  4BAA A;  1TJ7 A;  3TV2 A;  3KDZ A;  1DOF A;  3GZH A;  1GK3 A;  4EEI A;  1TJV A;  2PTR A;  1YFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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