1AUWA

H91n delta 2 crystallin from duck
Total Genus 180
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
447
structure length
447
Chain Sequence
TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDINTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTDSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Eye lens protein
molecule keywords DELTA 2 CRYSTALLIN
publication title Structural comparison of the enzymatically active and inactive forms of delta crystallin and the role of histidine 91.
pubmed doi rcsb
source organism Anas platyrhynchos
total genus 180
structure length 447
sequence length 447
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 1997-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1auwA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1auwA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1auwA02
4CQ5A 1FUQA 4EFCA 2J91A 2PFMA 1VDKA 1FUOA 3RRPA 2QVEA 4FFXA 4NSLA 1U16A 4EEIA 1GKJA 3R6YA 2O7FA 4HGVA 2O7EA 2YIIA 3KDZA 5HW2A 3TV2A 1I0AA 4C6GA 1HY0A 3NO9A 2RJSA 3R6QA 4MX2A 4C5UA 1JSWA 1Y2MA 4V2QA 2O6YA 2RJRA 4ADLA 4BABA 2O78A 1XWOA 1TJWA 1J3UA 2FUSA 2PTRA 1DCNA 1KQ7A 2NYNA 4ADMA 4APBA 1RE5A 5F91A 2PTQA 3GZHA 3CZOA 2E9FA 1TJUA 3NZ4A 1HY1A 2OHYA 1B8FA 1EB4A 2O7BA 1GK3A 4BAAA 3E04A 5F92A 4NLEA 5EYVA 1W27A 1YISA 3BHGA 1K7WA 3RD8A 4C5SA 3KDYA 3QBPA 1FURA 1AUWA 1T6JA 1Q5NA 1GKMA 1K62A 1U15A 3C8TA 2O7DA 1T6PA 2VD6A 1TJ7A 1GK2A 5D6BA 3UNVA 3GTDA 4FLCA 1DOFA 3R6VA 1YFMA 4V2RA 5EYTA 4C5RA 3OCFA 1YFEA 1C3UA 3OCEA 1C3CA 2PTSA 1FUPA 2HVGA 2X75A 1TJVA 4APAA 2QGAB 2NYFA
chains in the Genus database with same CATH superfamily
4CQ5A 4WNLA 1FUQA 4EFCA 2J91A 1Q92A 1T9HA 1Q91A 2PFMA 1VDKA 1FUOA 3RRPA 2QVEA 2NYFA 1Z4IA 4FFXA 4NSLA 1U16A 3F4SA 4EEIA 1GKJA 3R6YA 1IW7D 2O7FA 1Z4PX 3F4TA 1XL8A 3U13A 1XLYA 4HGVA 2O7EA 2VL7A 2YIIA 3KDZA 5HW2A 3TV2A 2FENA 4L57A 2RCNA 1I0AA 4C6GA 4L6CA 1Z4LA 1HY0A 3NO9A 2RJSA 3R6QA 4A15A 4MX2A 5M0JA 3CI0K 4C5UA 4YIHA 1JSWA 1Y2MA 3F4RA 4V2QA 2O6YA 4E88A 2RJRA 4ADLA 4BABA 2O78A 1XWOA 1TJWA 1XL7A 1J3UA 2JARA 1XMDA 2FUSA 2PTRA 1DCNA 1KQ7A 2NYNA 1MH9A 4ADMA 2D28C 4APBA 1RE5A 2I7DA 5F91A 2PTQA 3GZHA 3CZOA 2E9FA 1Z4QA 1TJUA 2JAOA 3NZ4A 1HY1A 3CRW1 2OHYA 2JAUA 1B8FA 1EB4A 2O7BA 1GK3A 1Z4MA 4BAAA 3E04A 5F92A 4NLEA 5EYVA 1W27A 1YISA 2JAWA 3BHGA 1K7WA 3RD8A 4C5SA 3KDYA 3QBPA 1FURA 1AUWA 2YV5A 4IQJM 1T6JA 1Q5NA 2D27A 1GKMA 1K62A 3U19A 1U15A 3C8TA 2O7DA 1T6PA 3BWVA 1TJ7A 1GK2A 1XMCA 2VD6A 5M0IA 4NFLA 1U0LA 2VSFA 5H8WA 1Z4JA 3CRVA 5D6BA 3UNVA 3GTDA 4FLCA 1DOFA 3R6VA 4YIKA 1YFMA 4V2RA 5EYTA 4C5RA 3OCFA 2FELA 1YFEA 4MWOA 1C3UA 3OCEA 1C3CA 2PTSA 1FUPA 2HVGA 4L6AA 2X75A 1TJVA 4APAA 4MUMA 2QGAB 1Z4KA
chains in the Genus database with same CATH topology
4CQ5A 1FUQA 4EFCA 2J91A 2PFMA 1VDKA 1FUOA 3RRPA 2QVEA 4FFXA 4NSLA 1U16A 4EEIA 1GKJA 3R6YA 2O7FA 4HGVA 2O7EA 2YIIA 3KDZA 5HW2A 3TV2A 1I0AA 4C6GA 1HY0A 3NO9A 2RJSA 3R6QA 4MX2A 4C5UA 1JSWA 1Y2MA 4V2QA 2O6YA 2RJRA 4ADLA 4BABA 2O78A 1XWOA 1TJWA 1J3UA 2FUSA 2PTRA 1DCNA 1KQ7A 2NYNA 4ADMA 4APBA 1RE5A 5F91A 2PTQA 3GZHA 3CZOA 2E9FA 1TJUA 3NZ4A 1HY1A 2OHYA 1B8FA 1EB4A 2O7BA 1GK3A 4BAAA 3E04A 5F92A 4NLEA 5EYVA 1W27A 1YISA 3BHGA 1K7WA 3RD8A 4C5SA 3KDYA 3QBPA 1FURA 1AUWA 1T6JA 1Q5NA 1GKMA 1K62A 1U15A 3C8TA 2O7DA 1T6PA 2VD6A 1TJ7A 1GK2A 5D6BA 3UNVA 3GTDA 4FLCA 1DOFA 3R6VA 1YFMA 4V2RA 5EYTA 4C5RA 3OCFA 1YFEA 1C3UA 3OCEA 1C3CA 2PTSA 1FUPA 2HVGA 2X75A 1TJVA 4APAA 2QGAB 2NYFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CQ5 A;  1FUQ A;  4EFC A;  2J91 A;  2PFM A;  1VDK A;  1FUO A;  3RRP A;  2QVE A;  4FFX A;  4NSL A;  1U16 A;  4EEI A;  1GKJ A;  3R6Y A;  2O7F A;  4HGV A;  2O7E A;  2YII A;  3KDZ A;  5HW2 A;  3TV2 A;  1I0A A;  4C6G A;  1HY0 A;  3NO9 A;  2RJS A;  3R6Q A;  4MX2 A;  4C5U A;  1JSW A;  1Y2M A;  4V2Q A;  2O6Y A;  2RJR A;  4ADL A;  4BAB A;  2O78 A;  1XWO A;  1TJW A;  1J3U A;  2FUS A;  2PTR A;  1DCN A;  1KQ7 A;  2NYN A;  4ADM A;  4APB A;  1RE5 A;  5F91 A;  2PTQ A;  3GZH A;  3CZO A;  2E9F A;  1TJU A;  3NZ4 A;  1HY1 A;  2OHY A;  1B8F A;  1EB4 A;  2O7B A;  1GK3 A;  4BAA A;  3E04 A;  5F92 A;  4NLE A;  5EYV A;  1W27 A;  1YIS A;  3BHG A;  1K7W A;  3RD8 A;  4C5S A;  3KDY A;  3QBP A;  1FUR A;  1AUW A;  1T6J A;  1Q5N A;  1GKM A;  1K62 A;  1U15 A;  3C8T A;  2O7D A;  1T6P A;  2VD6 A;  1TJ7 A;  1GK2 A;  5D6B A;  3UNV A;  3GTD A;  4FLC A;  1DOF A;  3R6V A;  1YFM A;  4V2R A;  5EYT A;  4C5R A;  3OCF A;  1YFE A;  1C3U A;  3OCE A;  1C3C A;  2PTS A;  1FUP A;  2HVG A;  2X75 A;  1TJV A;  4APA A;  2QGA B;  2NYF A; 
#chains in the Genus database with same CATH topology
 4CQ5 A;  4WNL A;  1FUQ A;  4EFC A;  2J91 A;  1Q92 A;  1T9H A;  1Q91 A;  2PFM A;  1VDK A;  1FUO A;  3RRP A;  2QVE A;  2NYF A;  1Z4I A;  4FFX A;  4NSL A;  1U16 A;  3F4S A;  4EEI A;  1GKJ A;  3R6Y A;  1IW7 D;  2O7F A;  1Z4P X;  3F4T A;  1XL8 A;  3U13 A;  1XLY A;  4HGV A;  2O7E A;  2VL7 A;  2YII A;  3KDZ A;  5HW2 A;  3TV2 A;  2FEN A;  4L57 A;  2RCN A;  1I0A A;  4C6G A;  4L6C A;  1Z4L A;  1HY0 A;  3NO9 A;  2RJS A;  3R6Q A;  4A15 A;  4MX2 A;  5M0J A;  3CI0 K;  4C5U A;  4YIH A;  1JSW A;  1Y2M A;  3F4R A;  4V2Q A;  2O6Y A;  4E88 A;  2RJR A;  4ADL A;  4BAB A;  2O78 A;  1XWO A;  1TJW A;  1XL7 A;  1J3U A;  2JAR A;  1XMD A;  2FUS A;  2PTR A;  1DCN A;  1KQ7 A;  2NYN A;  1MH9 A;  4ADM A;  2D28 C;  4APB A;  1RE5 A;  2I7D A;  5F91 A;  2PTQ A;  3GZH A;  3CZO A;  2E9F A;  1Z4Q A;  1TJU A;  2JAO A;  3NZ4 A;  1HY1 A;  3CRW 1;  2OHY A;  2JAU A;  1B8F A;  1EB4 A;  2O7B A;  1GK3 A;  1Z4M A;  4BAA A;  3E04 A;  5F92 A;  4NLE A;  5EYV A;  1W27 A;  1YIS A;  2JAW A;  3BHG A;  1K7W A;  3RD8 A;  4C5S A;  3KDY A;  3QBP A;  1FUR A;  1AUW A;  2YV5 A;  4IQJ M;  1T6J A;  1Q5N A;  2D27 A;  1GKM A;  1K62 A;  3U19 A;  1U15 A;  3C8T A;  2O7D A;  1T6P A;  3BWV A;  1TJ7 A;  1GK2 A;  1XMC A;  2VD6 A;  5M0I A;  4NFL A;  1U0L A;  2VSF A;  5H8W A;  1Z4J A;  3CRV A;  5D6B A;  3UNV A;  3GTD A;  4FLC A;  1DOF A;  3R6V A;  4YIK A;  1YFM A;  4V2R A;  5EYT A;  4C5R A;  3OCF A;  2FEL A;  1YFE A;  4MWO A;  1C3U A;  3OCE A;  1C3C A;  2PTS A;  1FUP A;  2HVG A;  4L6A A;  2X75 A;  1TJV A;  4APA A;  4MUM A;  2QGA B;  1Z4K A; 
#chains in the Genus database with same CATH homology
 4CQ5 A;  1FUQ A;  4EFC A;  2J91 A;  2PFM A;  1VDK A;  1FUO A;  3RRP A;  2QVE A;  4FFX A;  4NSL A;  1U16 A;  4EEI A;  1GKJ A;  3R6Y A;  2O7F A;  4HGV A;  2O7E A;  2YII A;  3KDZ A;  5HW2 A;  3TV2 A;  1I0A A;  4C6G A;  1HY0 A;  3NO9 A;  2RJS A;  3R6Q A;  4MX2 A;  4C5U A;  1JSW A;  1Y2M A;  4V2Q A;  2O6Y A;  2RJR A;  4ADL A;  4BAB A;  2O78 A;  1XWO A;  1TJW A;  1J3U A;  2FUS A;  2PTR A;  1DCN A;  1KQ7 A;  2NYN A;  4ADM A;  4APB A;  1RE5 A;  5F91 A;  2PTQ A;  3GZH A;  3CZO A;  2E9F A;  1TJU A;  3NZ4 A;  1HY1 A;  2OHY A;  1B8F A;  1EB4 A;  2O7B A;  1GK3 A;  4BAA A;  3E04 A;  5F92 A;  4NLE A;  5EYV A;  1W27 A;  1YIS A;  3BHG A;  1K7W A;  3RD8 A;  4C5S A;  3KDY A;  3QBP A;  1FUR A;  1AUW A;  1T6J A;  1Q5N A;  1GKM A;  1K62 A;  1U15 A;  3C8T A;  2O7D A;  1T6P A;  2VD6 A;  1TJ7 A;  1GK2 A;  5D6B A;  3UNV A;  3GTD A;  4FLC A;  1DOF A;  3R6V A;  1YFM A;  4V2R A;  5EYT A;  4C5R A;  3OCF A;  1YFE A;  1C3U A;  3OCE A;  1C3C A;  2PTS A;  1FUP A;  2HVG A;  2X75 A;  1TJV A;  4APA A;  2QGA B;  2NYF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...