1AUWA

H91n delta 2 crystallin from duck
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
447
structure length
447
Chain Sequence
TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDINTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTDSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DELTA 2 CRYSTALLIN
publication title Structural comparison of the enzymatically active and inactive forms of delta crystallin and the role of histidine 91.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Eye lens protein
total genus 180
structure length 447
sequence length 447
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 1997-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1auwA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1auwA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1auwA02
1K7WA 1DCNA 3R6YA 1KQ7A 1TJUA 3BHGA 3NO9A 5F91A 2VD6A 1YISA 2PTRA 1HY0A 2E9FA 2QGAB 4C5RA 2O7DA 3CZOA 1T6PA 1YFMA 1W27A 3KDZA 1T6JA 2O7BA 4C6GA 1AUWA 3TV2A 5D6BA 1EB4A 1GK3A 1C3CA 2O6YA 2NYFA 3GZHA 3KDYA 1Y2MA 4NLEA 2X75A 4APBA 1U16A 4ADMA 2PTQA 1K62A 2FUSA 3C8TA 4C5UA 1FUQA 4V2QA 1RE5A 1DOFA 4MX2A 1HY1A 1B8FA 1GKMA 2HVGA 3R6QA 3GTDA 3QBPA 2O7FA 4ADLA 4EEIA 1FUOA 4APAA 1YFEA 1J3UA 1I0AA 2J91A 2QVEA 1GKJA 1FUPA 4BAAA 2NYNA 1TJ7A 3OCEA 4FFXA 1C3UA 3NZ4A 5HW2A 1JSWA 5EYVA 4C5SA 1XWOA 3E04A 1VDKA 2RJSA 2PFMA 1FURA 3UNVA 2OHYA 1TJWA 3OCFA 2PTSA 1TJVA 1U15A 4FLCA 3R6VA 4V2RA 4HGVA 5F92A 2RJRA 4NSLA 3RD8A 4BABA 1GK2A 4EFCA 5EYTA 1Q5NA 2O78A 2O7EA 3RRPA 2YIIA 4CQ5A
chains in the Genus database with same CATH superfamily
1K7WA 1T9HA 2D28C 1DCNA 3R6YA 1KQ7A 1TJUA 3BHGA 3NO9A 2FENA 4MWOA 5F91A 2VD6A 1YISA 2PTRA 1HY0A 2E9FA 1Z4LA 2QGAB 4C5RA 2O7DA 1Q91A 3CZOA 1XL8A 2VL7A 1Q92A 1T6PA 1YFMA 1W27A 3KDZA 1T6JA 2O7BA 4C6GA 1AUWA 3TV2A 2JAUA 5D6BA 1EB4A 1GK3A 1C3CA 2O6YA 3U19A 2NYFA 3GZHA 3KDYA 1Y2MA 4NLEA 2X75A 1Z4MA 3F4TA 4APBA 1U16A 4ADMA 2PTQA 1XMDA 1K62A 5H8WA 2FELA 2FUSA 3C8TA 3BWVA 2I7DA 4C5UA 1FUQA 4V2QA 1RE5A 1DOFA 5M0JA 4A15A 2D27A 4MX2A 1HY1A 1B8FA 4L57A 1GKMA 3F4SA 4WNLA 2HVGA 4L6AA 3R6QA 3GTDA 3QBPA 2O7FA 1MH9A 4ADLA 4EEIA 1FUOA 2RCNA 4APAA 1YFEA 1J3UA 1I0AA 2J91A 2JAWA 1U0LA 2QVEA 1GKJA 2VSFA 1FUPA 1Z4QA 4BAAA 2NYNA 1TJ7A 3U13A 1Z4JA 4E88A 4MUMA 2JAOA 3OCEA 1C3UA 4FFXA 1Z4PX 3NZ4A 5HW2A 1XLYA 3CRVA 3CRW1 1JSWA 4YIHA 1IW7D 4L6CA 5EYVA 4C5SA 1XWOA 3E04A 1VDKA 2RJSA 2PFMA 1FURA 3UNVA 2OHYA 1TJWA 2JARA 1Z4KA 3OCFA 2PTSA 1TJVA 5M0IA 1U15A 4FLCA 3R6VA 4V2RA 4HGVA 5F92A 2RJRA 4NFLA 4NSLA 3RD8A 4BABA 1GK2A 1XMCA 3CI0K 4YIKA 4EFCA 4IQJM 5EYTA 1XL7A 1Z4IA 1Q5NA 2O78A 2O7EA 3F4RA 2YV5A 3RRPA 2YIIA 4CQ5A
chains in the Genus database with same CATH topology
1K7WA 1DCNA 3R6YA 1KQ7A 1TJUA 3BHGA 3NO9A 5F91A 2VD6A 1YISA 2PTRA 1HY0A 2E9FA 2QGAB 4C5RA 2O7DA 3CZOA 1T6PA 1YFMA 1W27A 3KDZA 1T6JA 2O7BA 4C6GA 1AUWA 3TV2A 5D6BA 1EB4A 1GK3A 1C3CA 2O6YA 2NYFA 3GZHA 3KDYA 1Y2MA 4NLEA 2X75A 4APBA 1U16A 4ADMA 2PTQA 1K62A 2FUSA 3C8TA 4C5UA 1FUQA 4V2QA 1RE5A 1DOFA 4MX2A 1HY1A 1B8FA 1GKMA 2HVGA 3R6QA 3GTDA 3QBPA 2O7FA 4ADLA 4EEIA 1FUOA 4APAA 1YFEA 1J3UA 1I0AA 2J91A 2QVEA 1GKJA 1FUPA 4BAAA 2NYNA 1TJ7A 3OCEA 4FFXA 1C3UA 3NZ4A 5HW2A 1JSWA 5EYVA 4C5SA 1XWOA 3E04A 1VDKA 2RJSA 2PFMA 1FURA 3UNVA 2OHYA 1TJWA 3OCFA 2PTSA 1TJVA 1U15A 4FLCA 3R6VA 4V2RA 4HGVA 5F92A 2RJRA 4NSLA 3RD8A 4BABA 1GK2A 4EFCA 5EYTA 1Q5NA 2O78A 2O7EA 3RRPA 2YIIA 4CQ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K7W A;  1DCN A;  3R6Y A;  1KQ7 A;  1TJU A;  3BHG A;  3NO9 A;  5F91 A;  2VD6 A;  1YIS A;  2PTR A;  1HY0 A;  2E9F A;  2QGA B;  4C5R A;  2O7D A;  3CZO A;  1T6P A;  1YFM A;  1W27 A;  3KDZ A;  1T6J A;  2O7B A;  4C6G A;  1AUW A;  3TV2 A;  5D6B A;  1EB4 A;  1GK3 A;  1C3C A;  2O6Y A;  2NYF A;  3GZH A;  3KDY A;  1Y2M A;  4NLE A;  2X75 A;  4APB A;  1U16 A;  4ADM A;  2PTQ A;  1K62 A;  2FUS A;  3C8T A;  4C5U A;  1FUQ A;  4V2Q A;  1RE5 A;  1DOF A;  4MX2 A;  1HY1 A;  1B8F A;  1GKM A;  2HVG A;  3R6Q A;  3GTD A;  3QBP A;  2O7F A;  4ADL A;  4EEI A;  1FUO A;  4APA A;  1YFE A;  1J3U A;  1I0A A;  2J91 A;  2QVE A;  1GKJ A;  1FUP A;  4BAA A;  2NYN A;  1TJ7 A;  3OCE A;  4FFX A;  1C3U A;  3NZ4 A;  5HW2 A;  1JSW A;  5EYV A;  4C5S A;  1XWO A;  3E04 A;  1VDK A;  2RJS A;  2PFM A;  1FUR A;  3UNV A;  2OHY A;  1TJW A;  3OCF A;  2PTS A;  1TJV A;  1U15 A;  4FLC A;  3R6V A;  4V2R A;  4HGV A;  5F92 A;  2RJR A;  4NSL A;  3RD8 A;  4BAB A;  1GK2 A;  4EFC A;  5EYT A;  1Q5N A;  2O78 A;  2O7E A;  3RRP A;  2YII A;  4CQ5 A; 
#chains in the Genus database with same CATH topology
 1K7W A;  1T9H A;  2D28 C;  1DCN A;  3R6Y A;  1KQ7 A;  1TJU A;  3BHG A;  3NO9 A;  2FEN A;  4MWO A;  5F91 A;  2VD6 A;  1YIS A;  2PTR A;  1HY0 A;  2E9F A;  1Z4L A;  2QGA B;  4C5R A;  2O7D A;  1Q91 A;  3CZO A;  1XL8 A;  2VL7 A;  1Q92 A;  1T6P A;  1YFM A;  1W27 A;  3KDZ A;  1T6J A;  2O7B A;  4C6G A;  1AUW A;  3TV2 A;  2JAU A;  5D6B A;  1EB4 A;  1GK3 A;  1C3C A;  2O6Y A;  3U19 A;  2NYF A;  3GZH A;  3KDY A;  1Y2M A;  4NLE A;  2X75 A;  1Z4M A;  3F4T A;  4APB A;  1U16 A;  4ADM A;  2PTQ A;  1XMD A;  1K62 A;  5H8W A;  2FEL A;  2FUS A;  3C8T A;  3BWV A;  2I7D A;  4C5U A;  1FUQ A;  4V2Q A;  1RE5 A;  1DOF A;  5M0J A;  4A15 A;  2D27 A;  4MX2 A;  1HY1 A;  1B8F A;  4L57 A;  1GKM A;  3F4S A;  4WNL A;  2HVG A;  4L6A A;  3R6Q A;  3GTD A;  3QBP A;  2O7F A;  1MH9 A;  4ADL A;  4EEI A;  1FUO A;  2RCN A;  4APA A;  1YFE A;  1J3U A;  1I0A A;  2J91 A;  2JAW A;  1U0L A;  2QVE A;  1GKJ A;  2VSF A;  1FUP A;  1Z4Q A;  4BAA A;  2NYN A;  1TJ7 A;  3U13 A;  1Z4J A;  4E88 A;  4MUM A;  2JAO A;  3OCE A;  1C3U A;  4FFX A;  1Z4P X;  3NZ4 A;  5HW2 A;  1XLY A;  3CRV A;  3CRW 1;  1JSW A;  4YIH A;  1IW7 D;  4L6C A;  5EYV A;  4C5S A;  1XWO A;  3E04 A;  1VDK A;  2RJS A;  2PFM A;  1FUR A;  3UNV A;  2OHY A;  1TJW A;  2JAR A;  1Z4K A;  3OCF A;  2PTS A;  1TJV A;  5M0I A;  1U15 A;  4FLC A;  3R6V A;  4V2R A;  4HGV A;  5F92 A;  2RJR A;  4NFL A;  4NSL A;  3RD8 A;  4BAB A;  1GK2 A;  1XMC A;  3CI0 K;  4YIK A;  4EFC A;  4IQJ M;  5EYT A;  1XL7 A;  1Z4I A;  1Q5N A;  2O78 A;  2O7E A;  3F4R A;  2YV5 A;  3RRP A;  2YII A;  4CQ5 A; 
#chains in the Genus database with same CATH homology
 1K7W A;  1DCN A;  3R6Y A;  1KQ7 A;  1TJU A;  3BHG A;  3NO9 A;  5F91 A;  2VD6 A;  1YIS A;  2PTR A;  1HY0 A;  2E9F A;  2QGA B;  4C5R A;  2O7D A;  3CZO A;  1T6P A;  1YFM A;  1W27 A;  3KDZ A;  1T6J A;  2O7B A;  4C6G A;  1AUW A;  3TV2 A;  5D6B A;  1EB4 A;  1GK3 A;  1C3C A;  2O6Y A;  2NYF A;  3GZH A;  3KDY A;  1Y2M A;  4NLE A;  2X75 A;  4APB A;  1U16 A;  4ADM A;  2PTQ A;  1K62 A;  2FUS A;  3C8T A;  4C5U A;  1FUQ A;  4V2Q A;  1RE5 A;  1DOF A;  4MX2 A;  1HY1 A;  1B8F A;  1GKM A;  2HVG A;  3R6Q A;  3GTD A;  3QBP A;  2O7F A;  4ADL A;  4EEI A;  1FUO A;  4APA A;  1YFE A;  1J3U A;  1I0A A;  2J91 A;  2QVE A;  1GKJ A;  1FUP A;  4BAA A;  2NYN A;  1TJ7 A;  3OCE A;  4FFX A;  1C3U A;  3NZ4 A;  5HW2 A;  1JSW A;  5EYV A;  4C5S A;  1XWO A;  3E04 A;  1VDK A;  2RJS A;  2PFM A;  1FUR A;  3UNV A;  2OHY A;  1TJW A;  3OCF A;  2PTS A;  1TJV A;  1U15 A;  4FLC A;  3R6V A;  4V2R A;  4HGV A;  5F92 A;  2RJR A;  4NSL A;  3RD8 A;  4BAB A;  1GK2 A;  4EFC A;  5EYT A;  1Q5N A;  2O78 A;  2O7E A;  3RRP A;  2YII A;  4CQ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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