2PFMA

Crystal structure of adenylosuccinate lyase (purb) from bacillus anthracis
Total Genus 175
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
175
sequence length
434
structure length
434
Chain Sequence
ISRYTRPEMGAIWTEENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHASFDIDRIYEIEKETRHDVVAFTRAVSETPALGEERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAVGTYANIDPFVEKYVCENLGLEAAPISTQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYENVPLWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQHVDTIFERLGLNEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Adenylosuccinate lyase
publication title Crystal Structure of Adenylosuccinate Lyase (PurB) from Bacillus anthracis
rcsb
source organism Bacillus anthracis
molecule tags Lyase
total genus 175
structure length 434
sequence length 434
chains with identical sequence B
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-04-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2pfmA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2pfmA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2pfmA02
3R6VA 4EEIA 1B8FA 3QBPA 1GKMA 1T6PA 2NYNA 1FUQA 3OCEA 1JSWA 3KDYA 4CQ5A 2FUSA 4BAAA 2PFMA 1TJVA 1YISA 1K7WA 3NO9A 1Q5NA 3RRPA 2O78A 4V2QA 4MX2A 2O7DA 4APBA 3NZ4A 1U16A 2O7BA 4NSLA 1TJWA 5D6BA 1DOFA 3UNVA 1J3UA 2O7EA 2OHYA 1HY1A 2RJRA 4FFXA 3TV2A 2VD6A 1TJUA 1DCNA 3RD8A 1Y2MA 5F91A 3R6QA 3C8TA 4NLEA 4FLCA 1FURA 2PTRA 4EFCA 2YIIA 1YFEA 5HW2A 4C5SA 1FUPA 1U15A 1HY0A 1GK2A 5F92A 3KDZA 1GKJA 1C3UA 2HVGA 4V2RA 4C5RA 3R6YA 2O6YA 1TJ7A 2J91A 1K62A 2E9FA 3GTDA 1RE5A 3E04A 4C6GA 2QGAB 1KQ7A 4BABA 1T6JA 2O7FA 1W27A 1FUOA 1I0AA 1GK3A 4C5UA 1EB4A 1YFMA 4ADMA 1VDKA 1C3CA 4HGVA 1XWOA 3CZOA 3GZHA 4ADLA 5EYTA 2X75A 4APAA 2PTSA 2QVEA 2RJSA 2NYFA 5EYVA 3BHGA 1AUWA 3OCFA 2PTQA
chains in the Genus database with same CATH superfamily
3R6VA 2JARA 4EEIA 1B8FA 3QBPA 1GKMA 4IQJM 1T6PA 4MWOA 2NYNA 1XLYA 1FUQA 3OCEA 2JAUA 1JSWA 3KDYA 5M0IA 4CQ5A 2FUSA 4BAAA 4E88A 2PFMA 1TJVA 1YISA 2JAWA 1K7WA 3NO9A 2RCNA 3U19A 1Q5NA 3RRPA 2O78A 4V2QA 4MX2A 2O7DA 4APBA 3NZ4A 1U16A 2O7BA 4NSLA 1TJWA 5D6BA 1DOFA 2I7DA 4YIKA 3UNVA 2D27A 1J3UA 2O7EA 2OHYA 4WNLA 1HY1A 2RJRA 4FFXA 1Z4JA 3CRW1 3TV2A 2VD6A 1TJUA 3F4SA 4L6CA 1DCNA 5M0JA 3RD8A 1Y2MA 1Z4IA 5F91A 3R6QA 4A15A 4NFLA 3C8TA 4NLEA 4FLCA 1FURA 2PTRA 4EFCA 2YIIA 4L6AA 1YFEA 1XMDA 2D28C 5HW2A 4C5SA 1FUPA 1U15A 1XMCA 1HY0A 5H8WA 5F92A 1GK2A 3KDZA 1GKJA 1C3UA 2HVGA 1IW7D 2YV5A 4V2RA 3R6YA 4C5RA 2O6YA 3CI0K 1TJ7A 1U0LA 2J91A 1K62A 2E9FA 4L57A 2VL7A 1Q92A 3GTDA 1RE5A 3E04A 4C6GA 4YIHA 2QGAB 1Z4LA 1KQ7A 4BABA 1T6JA 3F4TA 2O7FA 1W27A 1FUOA 1Z4KA 2FELA 1I0AA 1Z4PX 1GK3A 2JAOA 4C5UA 3BWVA 1EB4A 1YFMA 4ADMA 1VDKA 1XL7A 1Z4QA 3F4RA 1C3CA 4HGVA 1XWOA 3CZOA 3GZHA 4ADLA 5EYTA 2X75A 4APAA 1XL8A 2PTSA 2QVEA 1Z4MA 2FENA 1Q91A 4MUMA 2RJSA 3CRVA 1T9HA 2NYFA 5EYVA 3BHGA 1AUWA 3U13A 3OCFA 2PTQA 1MH9A 2VSFA
chains in the Genus database with same CATH topology
3R6VA 4EEIA 1B8FA 3QBPA 1GKMA 1T6PA 2NYNA 1FUQA 3OCEA 1JSWA 3KDYA 4CQ5A 2FUSA 4BAAA 2PFMA 1TJVA 1YISA 1K7WA 3NO9A 1Q5NA 3RRPA 2O78A 4V2QA 4MX2A 2O7DA 4APBA 3NZ4A 1U16A 2O7BA 4NSLA 1TJWA 5D6BA 1DOFA 3UNVA 1J3UA 2O7EA 2OHYA 1HY1A 2RJRA 4FFXA 3TV2A 2VD6A 1TJUA 1DCNA 3RD8A 1Y2MA 5F91A 3R6QA 3C8TA 4NLEA 4FLCA 1FURA 2PTRA 4EFCA 2YIIA 1YFEA 5HW2A 4C5SA 1FUPA 1U15A 1HY0A 1GK2A 5F92A 3KDZA 1GKJA 1C3UA 2HVGA 4V2RA 4C5RA 3R6YA 2O6YA 1TJ7A 2J91A 1K62A 2E9FA 3GTDA 1RE5A 3E04A 4C6GA 2QGAB 1KQ7A 4BABA 1T6JA 2O7FA 1W27A 1FUOA 1I0AA 1GK3A 4C5UA 1EB4A 1YFMA 4ADMA 1VDKA 1C3CA 4HGVA 1XWOA 3CZOA 3GZHA 4ADLA 5EYTA 2X75A 4APAA 2PTSA 2QVEA 2RJSA 2NYFA 5EYVA 3BHGA 1AUWA 3OCFA 2PTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R6V A;  4EEI A;  1B8F A;  3QBP A;  1GKM A;  1T6P A;  2NYN A;  1FUQ A;  3OCE A;  1JSW A;  3KDY A;  4CQ5 A;  2FUS A;  4BAA A;  2PFM A;  1TJV A;  1YIS A;  1K7W A;  3NO9 A;  1Q5N A;  3RRP A;  2O78 A;  4V2Q A;  4MX2 A;  2O7D A;  4APB A;  3NZ4 A;  1U16 A;  2O7B A;  4NSL A;  1TJW A;  5D6B A;  1DOF A;  3UNV A;  1J3U A;  2O7E A;  2OHY A;  1HY1 A;  2RJR A;  4FFX A;  3TV2 A;  2VD6 A;  1TJU A;  1DCN A;  3RD8 A;  1Y2M A;  5F91 A;  3R6Q A;  3C8T A;  4NLE A;  4FLC A;  1FUR A;  2PTR A;  4EFC A;  2YII A;  1YFE A;  5HW2 A;  4C5S A;  1FUP A;  1U15 A;  1HY0 A;  1GK2 A;  5F92 A;  3KDZ A;  1GKJ A;  1C3U A;  2HVG A;  4V2R A;  4C5R A;  3R6Y A;  2O6Y A;  1TJ7 A;  2J91 A;  1K62 A;  2E9F A;  3GTD A;  1RE5 A;  3E04 A;  4C6G A;  2QGA B;  1KQ7 A;  4BAB A;  1T6J A;  2O7F A;  1W27 A;  1FUO A;  1I0A A;  1GK3 A;  4C5U A;  1EB4 A;  1YFM A;  4ADM A;  1VDK A;  1C3C A;  4HGV A;  1XWO A;  3CZO A;  3GZH A;  4ADL A;  5EYT A;  2X75 A;  4APA A;  2PTS A;  2QVE A;  2RJS A;  2NYF A;  5EYV A;  3BHG A;  1AUW A;  3OCF A;  2PTQ A; 
#chains in the Genus database with same CATH topology
 3R6V A;  2JAR A;  4EEI A;  1B8F A;  3QBP A;  1GKM A;  4IQJ M;  1T6P A;  4MWO A;  2NYN A;  1XLY A;  1FUQ A;  3OCE A;  2JAU A;  1JSW A;  3KDY A;  5M0I A;  4CQ5 A;  2FUS A;  4BAA A;  4E88 A;  2PFM A;  1TJV A;  1YIS A;  2JAW A;  1K7W A;  3NO9 A;  2RCN A;  3U19 A;  1Q5N A;  3RRP A;  2O78 A;  4V2Q A;  4MX2 A;  2O7D A;  4APB A;  3NZ4 A;  1U16 A;  2O7B A;  4NSL A;  1TJW A;  5D6B A;  1DOF A;  2I7D A;  4YIK A;  3UNV A;  2D27 A;  1J3U A;  2O7E A;  2OHY A;  4WNL A;  1HY1 A;  2RJR A;  4FFX A;  1Z4J A;  3CRW 1;  3TV2 A;  2VD6 A;  1TJU A;  3F4S A;  4L6C A;  1DCN A;  5M0J A;  3RD8 A;  1Y2M A;  1Z4I A;  5F91 A;  3R6Q A;  4A15 A;  4NFL A;  3C8T A;  4NLE A;  4FLC A;  1FUR A;  2PTR A;  4EFC A;  2YII A;  4L6A A;  1YFE A;  1XMD A;  2D28 C;  5HW2 A;  4C5S A;  1FUP A;  1U15 A;  1XMC A;  1HY0 A;  5H8W A;  5F92 A;  1GK2 A;  3KDZ A;  1GKJ A;  1C3U A;  2HVG A;  1IW7 D;  2YV5 A;  4V2R A;  3R6Y A;  4C5R A;  2O6Y A;  3CI0 K;  1TJ7 A;  1U0L A;  2J91 A;  1K62 A;  2E9F A;  4L57 A;  2VL7 A;  1Q92 A;  3GTD A;  1RE5 A;  3E04 A;  4C6G A;  4YIH A;  2QGA B;  1Z4L A;  1KQ7 A;  4BAB A;  1T6J A;  3F4T A;  2O7F A;  1W27 A;  1FUO A;  1Z4K A;  2FEL A;  1I0A A;  1Z4P X;  1GK3 A;  2JAO A;  4C5U A;  3BWV A;  1EB4 A;  1YFM A;  4ADM A;  1VDK A;  1XL7 A;  1Z4Q A;  3F4R A;  1C3C A;  4HGV A;  1XWO A;  3CZO A;  3GZH A;  4ADL A;  5EYT A;  2X75 A;  4APA A;  1XL8 A;  2PTS A;  2QVE A;  1Z4M A;  2FEN A;  1Q91 A;  4MUM A;  2RJS A;  3CRV A;  1T9H A;  2NYF A;  5EYV A;  3BHG A;  1AUW A;  3U13 A;  3OCF A;  2PTQ A;  1MH9 A;  2VSF A; 
#chains in the Genus database with same CATH homology
 3R6V A;  4EEI A;  1B8F A;  3QBP A;  1GKM A;  1T6P A;  2NYN A;  1FUQ A;  3OCE A;  1JSW A;  3KDY A;  4CQ5 A;  2FUS A;  4BAA A;  2PFM A;  1TJV A;  1YIS A;  1K7W A;  3NO9 A;  1Q5N A;  3RRP A;  2O78 A;  4V2Q A;  4MX2 A;  2O7D A;  4APB A;  3NZ4 A;  1U16 A;  2O7B A;  4NSL A;  1TJW A;  5D6B A;  1DOF A;  3UNV A;  1J3U A;  2O7E A;  2OHY A;  1HY1 A;  2RJR A;  4FFX A;  3TV2 A;  2VD6 A;  1TJU A;  1DCN A;  3RD8 A;  1Y2M A;  5F91 A;  3R6Q A;  3C8T A;  4NLE A;  4FLC A;  1FUR A;  2PTR A;  4EFC A;  2YII A;  1YFE A;  5HW2 A;  4C5S A;  1FUP A;  1U15 A;  1HY0 A;  1GK2 A;  5F92 A;  3KDZ A;  1GKJ A;  1C3U A;  2HVG A;  4V2R A;  4C5R A;  3R6Y A;  2O6Y A;  1TJ7 A;  2J91 A;  1K62 A;  2E9F A;  3GTD A;  1RE5 A;  3E04 A;  4C6G A;  2QGA B;  1KQ7 A;  4BAB A;  1T6J A;  2O7F A;  1W27 A;  1FUO A;  1I0A A;  1GK3 A;  4C5U A;  1EB4 A;  1YFM A;  4ADM A;  1VDK A;  1C3C A;  4HGV A;  1XWO A;  3CZO A;  3GZH A;  4ADL A;  5EYT A;  2X75 A;  4APA A;  2PTS A;  2QVE A;  2RJS A;  2NYF A;  5EYV A;  3BHG A;  1AUW A;  3OCF A;  2PTQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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