1I0AA

Crystal structure of wild type turkey delta 1 crystallin (eye lens protein)
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
453
structure length
453
Chain Sequence
GRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLDVVDTLTAVLQVATGVISTLQINKENMEKALTPELLSTDLALYLVRKGMPIRQAQTASGKAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYTAVGGTAKSSVTAQIEQLRELLKKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
molecule tags Lyase
molecule keywords DELTA CRYSTALLIN I
total genus 181
structure length 453
sequence length 453
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1i0aA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1i0aA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1i0aA02
1B8FA 1J3UA 4BABA 1FUQA 3OCEA 5HW2A 2NYFA 1K7WA 2O6YA 3QBPA 2O7DA 3TV2A 4C5SA 1TJVA 1GK3A 2O7FA 4ADMA 1TJUA 3RD8A 1U15A 4CQ5A 1Q5NA 4C6GA 4NLEA 3GZHA 2QVEA 1YFMA 4MX2A 3KDYA 4C5UA 1DOFA 1AUWA 4V2RA 1TJ7A 3NO9A 1HY0A 4HGVA 4NSLA 3OCFA 5D6BA 2RJSA 1GKMA 2NYNA 1EB4A 5F91A 2O78A 5EYTA 1U16A 5F92A 4EFCA 1GK2A 3NZ4A 2VD6A 2OHYA 1C3CA 3CZOA 4APBA 3KDZA 4V2QA 3E04A 1VDKA 3R6YA 1T6JA 1FURA 3RRPA 3R6QA 1HY1A 2FUSA 1W27A 1FUOA 2PFMA 4FFXA 2YIIA 4APAA 3GTDA 4ADLA 1Y2MA 4BAAA 2QGAB 1C3UA 1GKJA 4EEIA 1XWOA 1FUPA 2O7EA 2RJRA 2X75A 3BHGA 1KQ7A 4FLCA 1YFEA 3UNVA 1RE5A 2O7BA 2E9FA 1T6PA 5EYVA 2HVGA 3C8TA 1K62A 4C5RA 2PTSA 1YISA 1TJWA 2PTRA 1JSWA 2J91A 3R6VA 1I0AA 2PTQA 1DCNA
chains in the Genus database with same CATH superfamily
1B8FA 3BWVA 1J3UA 3F4SA 1U0LA 4BABA 2VSFA 1FUQA 3OCEA 2FELA 5HW2A 2NYFA 1K7WA 2O6YA 3QBPA 2O7DA 3TV2A 4C5SA 1TJVA 2D28C 3CI0K 1GK3A 4WNLA 4IQJM 2O7FA 4ADMA 1TJUA 3RD8A 1Z4PX 3CRW1 3CRVA 1U15A 4CQ5A 1Q5NA 4C6GA 4NLEA 3GZHA 3U13A 2QVEA 1Z4LA 1Q91A 1YFMA 4MX2A 3KDYA 4C5UA 2JAUA 1Q92A 4YIHA 5M0JA 1DOFA 1AUWA 4V2RA 1TJ7A 3NO9A 1HY0A 4HGVA 1MH9A 4NSLA 1T9HA 1Z4JA 2JARA 3OCFA 5D6BA 2JAOA 2RJSA 1GKMA 2NYNA 5M0IA 1EB4A 5F91A 3F4TA 2O78A 5EYTA 1U16A 5F92A 4EFCA 2I7DA 1GK2A 3NZ4A 3U19A 1Z4QA 2JAWA 2VD6A 2OHYA 1C3CA 3CZOA 2D27A 1XMDA 4APBA 3KDZA 4V2QA 3E04A 4L6CA 1VDKA 4L57A 4MWOA 4A15A 3R6YA 1T6JA 1FURA 3RRPA 3R6QA 1HY1A 2FUSA 1W27A 1FUOA 2PFMA 2YV5A 4MUMA 1XMCA 1XLYA 4FFXA 4E88A 2YIIA 4APAA 3GTDA 4NFLA 4ADLA 1Y2MA 4BAAA 2QGAB 1C3UA 1XL8A 1GKJA 1IW7D 5H8WA 4EEIA 1XWOA 1DCNA 1FUPA 2O7EA 2RJRA 2X75A 3BHGA 4L6AA 1KQ7A 4FLCA 1YFEA 3UNVA 1RE5A 2FENA 2O7BA 2E9FA 1T6PA 5EYVA 2HVGA 1Z4IA 3C8TA 1K62A 3F4RA 1XL7A 4C5RA 2PTSA 1YISA 1TJWA 2VL7A 2PTRA 1JSWA 1Z4KA 4YIKA 2J91A 3R6VA 1I0AA 2RCNA 2PTQA 1Z4MA
chains in the Genus database with same CATH topology
1B8FA 1J3UA 4BABA 1FUQA 3OCEA 5HW2A 2NYFA 1K7WA 2O6YA 3QBPA 2O7DA 3TV2A 4C5SA 1TJVA 1GK3A 2O7FA 4ADMA 1TJUA 3RD8A 1U15A 4CQ5A 1Q5NA 4C6GA 4NLEA 3GZHA 2QVEA 1YFMA 4MX2A 3KDYA 4C5UA 1DOFA 1AUWA 4V2RA 1TJ7A 3NO9A 1HY0A 4HGVA 4NSLA 3OCFA 5D6BA 2RJSA 1GKMA 2NYNA 1EB4A 5F91A 2O78A 5EYTA 1U16A 5F92A 4EFCA 1GK2A 3NZ4A 2VD6A 2OHYA 1C3CA 3CZOA 4APBA 3KDZA 4V2QA 3E04A 1VDKA 3R6YA 1T6JA 1FURA 3RRPA 3R6QA 1HY1A 2FUSA 1W27A 1FUOA 2PFMA 4FFXA 2YIIA 4APAA 3GTDA 4ADLA 1Y2MA 4BAAA 2QGAB 1C3UA 1GKJA 4EEIA 1XWOA 1FUPA 2O7EA 2RJRA 2X75A 3BHGA 1KQ7A 4FLCA 1YFEA 3UNVA 1RE5A 2O7BA 2E9FA 1T6PA 5EYVA 2HVGA 3C8TA 1K62A 4C5RA 2PTSA 1YISA 1TJWA 2PTRA 1JSWA 2J91A 3R6VA 1I0AA 2PTQA 1DCNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B8F A;  1J3U A;  4BAB A;  1FUQ A;  3OCE A;  5HW2 A;  2NYF A;  1K7W A;  2O6Y A;  3QBP A;  2O7D A;  3TV2 A;  4C5S A;  1TJV A;  1GK3 A;  2O7F A;  4ADM A;  1TJU A;  3RD8 A;  1U15 A;  4CQ5 A;  1Q5N A;  4C6G A;  4NLE A;  3GZH A;  2QVE A;  1YFM A;  4MX2 A;  3KDY A;  4C5U A;  1DOF A;  1AUW A;  4V2R A;  1TJ7 A;  3NO9 A;  1HY0 A;  4HGV A;  4NSL A;  3OCF A;  5D6B A;  2RJS A;  1GKM A;  2NYN A;  1EB4 A;  5F91 A;  2O78 A;  5EYT A;  1U16 A;  5F92 A;  4EFC A;  1GK2 A;  3NZ4 A;  2VD6 A;  2OHY A;  1C3C A;  3CZO A;  4APB A;  3KDZ A;  4V2Q A;  3E04 A;  1VDK A;  3R6Y A;  1T6J A;  1FUR A;  3RRP A;  3R6Q A;  1HY1 A;  2FUS A;  1W27 A;  1FUO A;  2PFM A;  4FFX A;  2YII A;  4APA A;  3GTD A;  4ADL A;  1Y2M A;  4BAA A;  2QGA B;  1C3U A;  1GKJ A;  4EEI A;  1XWO A;  1FUP A;  2O7E A;  2RJR A;  2X75 A;  3BHG A;  1KQ7 A;  4FLC A;  1YFE A;  3UNV A;  1RE5 A;  2O7B A;  2E9F A;  1T6P A;  5EYV A;  2HVG A;  3C8T A;  1K62 A;  4C5R A;  2PTS A;  1YIS A;  1TJW A;  2PTR A;  1JSW A;  2J91 A;  3R6V A;  1I0A A;  2PTQ A;  1DCN A; 
#chains in the Genus database with same CATH topology
 1B8F A;  3BWV A;  1J3U A;  3F4S A;  1U0L A;  4BAB A;  2VSF A;  1FUQ A;  3OCE A;  2FEL A;  5HW2 A;  2NYF A;  1K7W A;  2O6Y A;  3QBP A;  2O7D A;  3TV2 A;  4C5S A;  1TJV A;  2D28 C;  3CI0 K;  1GK3 A;  4WNL A;  4IQJ M;  2O7F A;  4ADM A;  1TJU A;  3RD8 A;  1Z4P X;  3CRW 1;  3CRV A;  1U15 A;  4CQ5 A;  1Q5N A;  4C6G A;  4NLE A;  3GZH A;  3U13 A;  2QVE A;  1Z4L A;  1Q91 A;  1YFM A;  4MX2 A;  3KDY A;  4C5U A;  2JAU A;  1Q92 A;  4YIH A;  5M0J A;  1DOF A;  1AUW A;  4V2R A;  1TJ7 A;  3NO9 A;  1HY0 A;  4HGV A;  1MH9 A;  4NSL A;  1T9H A;  1Z4J A;  2JAR A;  3OCF A;  5D6B A;  2JAO A;  2RJS A;  1GKM A;  2NYN A;  5M0I A;  1EB4 A;  5F91 A;  3F4T A;  2O78 A;  5EYT A;  1U16 A;  5F92 A;  4EFC A;  2I7D A;  1GK2 A;  3NZ4 A;  3U19 A;  1Z4Q A;  2JAW A;  2VD6 A;  2OHY A;  1C3C A;  3CZO A;  2D27 A;  1XMD A;  4APB A;  3KDZ A;  4V2Q A;  3E04 A;  4L6C A;  1VDK A;  4L57 A;  4MWO A;  4A15 A;  3R6Y A;  1T6J A;  1FUR A;  3RRP A;  3R6Q A;  1HY1 A;  2FUS A;  1W27 A;  1FUO A;  2PFM A;  2YV5 A;  4MUM A;  1XMC A;  1XLY A;  4FFX A;  4E88 A;  2YII A;  4APA A;  3GTD A;  4NFL A;  4ADL A;  1Y2M A;  4BAA A;  2QGA B;  1C3U A;  1XL8 A;  1GKJ A;  1IW7 D;  5H8W A;  4EEI A;  1XWO A;  1DCN A;  1FUP A;  2O7E A;  2RJR A;  2X75 A;  3BHG A;  4L6A A;  1KQ7 A;  4FLC A;  1YFE A;  3UNV A;  1RE5 A;  2FEN A;  2O7B A;  2E9F A;  1T6P A;  5EYV A;  2HVG A;  1Z4I A;  3C8T A;  1K62 A;  3F4R A;  1XL7 A;  4C5R A;  2PTS A;  1YIS A;  1TJW A;  2VL7 A;  2PTR A;  1JSW A;  1Z4K A;  4YIK A;  2J91 A;  3R6V A;  1I0A A;  2RCN A;  2PTQ A;  1Z4M A; 
#chains in the Genus database with same CATH homology
 1B8F A;  1J3U A;  4BAB A;  1FUQ A;  3OCE A;  5HW2 A;  2NYF A;  1K7W A;  2O6Y A;  3QBP A;  2O7D A;  3TV2 A;  4C5S A;  1TJV A;  1GK3 A;  2O7F A;  4ADM A;  1TJU A;  3RD8 A;  1U15 A;  4CQ5 A;  1Q5N A;  4C6G A;  4NLE A;  3GZH A;  2QVE A;  1YFM A;  4MX2 A;  3KDY A;  4C5U A;  1DOF A;  1AUW A;  4V2R A;  1TJ7 A;  3NO9 A;  1HY0 A;  4HGV A;  4NSL A;  3OCF A;  5D6B A;  2RJS A;  1GKM A;  2NYN A;  1EB4 A;  5F91 A;  2O78 A;  5EYT A;  1U16 A;  5F92 A;  4EFC A;  1GK2 A;  3NZ4 A;  2VD6 A;  2OHY A;  1C3C A;  3CZO A;  4APB A;  3KDZ A;  4V2Q A;  3E04 A;  1VDK A;  3R6Y A;  1T6J A;  1FUR A;  3RRP A;  3R6Q A;  1HY1 A;  2FUS A;  1W27 A;  1FUO A;  2PFM A;  4FFX A;  2YII A;  4APA A;  3GTD A;  4ADL A;  1Y2M A;  4BAA A;  2QGA B;  1C3U A;  1GKJ A;  4EEI A;  1XWO A;  1FUP A;  2O7E A;  2RJR A;  2X75 A;  3BHG A;  1KQ7 A;  4FLC A;  1YFE A;  3UNV A;  1RE5 A;  2O7B A;  2E9F A;  1T6P A;  5EYV A;  2HVG A;  3C8T A;  1K62 A;  4C5R A;  2PTS A;  1YIS A;  1TJW A;  2PTR A;  1JSW A;  2J91 A;  3R6V A;  1I0A A;  2PTQ A;  1DCN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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