1I0AA

Crystal structure of wild type turkey delta 1 crystallin (eye lens protein)
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
453
structure length
453
Chain Sequence
GRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLDVVDTLTAVLQVATGVISTLQINKENMEKALTPELLSTDLALYLVRKGMPIRQAQTASGKAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYTAVGGTAKSSVTAQIEQLRELLKKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
molecule tags Lyase
molecule keywords DELTA CRYSTALLIN I
total genus 181
structure length 453
sequence length 453
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1i0aA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1i0aA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1i0aA02
4FFXA 2O7DA 4ADMA 1KQ7A 2PTQA 3QBPA 1C3CA 4HGVA 1K62A 1U16A 2X75A 5EYVA 1DCNA 4NSLA 3KDZA 3UNVA 1YISA 4C6GA 1TJUA 2PTRA 1U15A 3GTDA 1TJVA 4FLCA 2QGAB 1JSWA 1AUWA 1B8FA 4V2QA 4APBA 3NO9A 1J3UA 4BABA 4APAA 2E9FA 1T6PA 2O7FA 1GKJA 1Y2MA 4C5RA 1I0AA 5F91A 1YFMA 1YFEA 1EB4A 3KDYA 3R6VA 3RRPA 1K7WA 1VDKA 5D6BA 1HY0A 1TJWA 1T6JA 2VD6A 2O7BA 3OCFA 1TJ7A 3R6YA 1GK2A 2NYNA 2QVEA 2J91A 1FURA 3NZ4A 1GK3A 4NLEA 1DOFA 2O6YA 3OCEA 2OHYA 3GZHA 5EYTA 3E04A 1C3UA 2FUSA 3RD8A 1GKMA 4C5UA 2O78A 4EEIA 3CZOA 3R6QA 4EFCA 4ADLA 1FUPA 2HVGA 2PFMA 2PTSA 1FUOA 4MX2A 2NYFA 4CQ5A 2RJRA 4BAAA 2YIIA 1RE5A 5HW2A 3TV2A 1HY1A 2O7EA 1W27A 4V2RA 4C5SA 1XWOA 1Q5NA 2RJSA 5F92A 1FUQA 3C8TA 3BHGA
chains in the Genus database with same CATH superfamily
1XMDA 4FFXA 2O7DA 4NFLA 4ADMA 1KQ7A 2PTQA 3F4TA 3QBPA 1C3CA 4HGVA 1K62A 1U16A 2X75A 5EYVA 1DCNA 4NSLA 4YIKA 3KDZA 3UNVA 2JAUA 1YISA 4C6GA 1TJUA 1Q91A 1IW7D 2PTRA 1U15A 3F4SA 3GTDA 3U13A 1TJVA 4FLCA 2QGAB 1XL7A 1XMCA 1JSWA 1AUWA 4MUMA 1B8FA 4V2QA 4APBA 3NO9A 1J3UA 4BABA 1Q92A 4APAA 2E9FA 1T6PA 2O7FA 2VL7A 1GKJA 1Y2MA 4C5RA 4L6AA 1I0AA 1Z4MA 5F91A 4WNLA 3U19A 1YFMA 1YFEA 1XL8A 3CI0K 1EB4A 2JARA 2FELA 3KDYA 3R6VA 2D28C 3RRPA 1K7WA 1Z4QA 1VDKA 5D6BA 1HY0A 5M0IA 1TJWA 2I7DA 1T6JA 1Z4JA 2VD6A 2O7BA 3OCFA 1TJ7A 3R6YA 1GK2A 5H8WA 2NYNA 2JAOA 4YIHA 4L6CA 2QVEA 3CRVA 2YV5A 2J91A 2VSFA 1Z4KA 1Z4PX 1FURA 4E88A 1GK3A 3NZ4A 4NLEA 2D27A 1MH9A 1DOFA 2O6YA 3OCEA 2OHYA 1U0LA 3GZHA 5EYTA 3E04A 1C3UA 2FUSA 3RD8A 1GKMA 4C5UA 2O78A 1XLYA 4IQJM 4EEIA 2FENA 1Z4LA 3CZOA 5M0JA 1Z4IA 3R6QA 4EFCA 4ADLA 1FUPA 2HVGA 2PFMA 2PTSA 1FUOA 1T9HA 4MWOA 4MX2A 2NYFA 4A15A 2RCNA 2RJRA 4BAAA 4CQ5A 2YIIA 1RE5A 5HW2A 3TV2A 3BWVA 3CRW1 1HY1A 2O7EA 3F4RA 2JAWA 1W27A 4V2RA 4L57A 4C5SA 1XWOA 1Q5NA 2RJSA 5F92A 1FUQA 3C8TA 3BHGA
chains in the Genus database with same CATH topology
4FFXA 2O7DA 4ADMA 1KQ7A 2PTQA 3QBPA 1C3CA 4HGVA 1K62A 1U16A 2X75A 5EYVA 1DCNA 4NSLA 3KDZA 3UNVA 1YISA 4C6GA 1TJUA 2PTRA 1U15A 3GTDA 1TJVA 4FLCA 2QGAB 1JSWA 1AUWA 1B8FA 4V2QA 4APBA 3NO9A 1J3UA 4BABA 4APAA 2E9FA 1T6PA 2O7FA 1GKJA 1Y2MA 4C5RA 1I0AA 5F91A 1YFMA 1YFEA 1EB4A 3KDYA 3R6VA 3RRPA 1K7WA 1VDKA 5D6BA 1HY0A 1TJWA 1T6JA 2VD6A 2O7BA 3OCFA 1TJ7A 3R6YA 1GK2A 2NYNA 2QVEA 2J91A 1FURA 3NZ4A 1GK3A 4NLEA 1DOFA 2O6YA 3OCEA 2OHYA 3GZHA 5EYTA 3E04A 1C3UA 2FUSA 3RD8A 1GKMA 4C5UA 2O78A 4EEIA 3CZOA 3R6QA 4EFCA 4ADLA 1FUPA 2HVGA 2PFMA 2PTSA 1FUOA 4MX2A 2NYFA 4CQ5A 2RJRA 4BAAA 2YIIA 1RE5A 5HW2A 3TV2A 1HY1A 2O7EA 1W27A 4V2RA 4C5SA 1XWOA 1Q5NA 2RJSA 5F92A 1FUQA 3C8TA 3BHGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FFX A;  2O7D A;  4ADM A;  1KQ7 A;  2PTQ A;  3QBP A;  1C3C A;  4HGV A;  1K62 A;  1U16 A;  2X75 A;  5EYV A;  1DCN A;  4NSL A;  3KDZ A;  3UNV A;  1YIS A;  4C6G A;  1TJU A;  2PTR A;  1U15 A;  3GTD A;  1TJV A;  4FLC A;  2QGA B;  1JSW A;  1AUW A;  1B8F A;  4V2Q A;  4APB A;  3NO9 A;  1J3U A;  4BAB A;  4APA A;  2E9F A;  1T6P A;  2O7F A;  1GKJ A;  1Y2M A;  4C5R A;  1I0A A;  5F91 A;  1YFM A;  1YFE A;  1EB4 A;  3KDY A;  3R6V A;  3RRP A;  1K7W A;  1VDK A;  5D6B A;  1HY0 A;  1TJW A;  1T6J A;  2VD6 A;  2O7B A;  3OCF A;  1TJ7 A;  3R6Y A;  1GK2 A;  2NYN A;  2QVE A;  2J91 A;  1FUR A;  3NZ4 A;  1GK3 A;  4NLE A;  1DOF A;  2O6Y A;  3OCE A;  2OHY A;  3GZH A;  5EYT A;  3E04 A;  1C3U A;  2FUS A;  3RD8 A;  1GKM A;  4C5U A;  2O78 A;  4EEI A;  3CZO A;  3R6Q A;  4EFC A;  4ADL A;  1FUP A;  2HVG A;  2PFM A;  2PTS A;  1FUO A;  4MX2 A;  2NYF A;  4CQ5 A;  2RJR A;  4BAA A;  2YII A;  1RE5 A;  5HW2 A;  3TV2 A;  1HY1 A;  2O7E A;  1W27 A;  4V2R A;  4C5S A;  1XWO A;  1Q5N A;  2RJS A;  5F92 A;  1FUQ A;  3C8T A;  3BHG A; 
#chains in the Genus database with same CATH topology
 1XMD A;  4FFX A;  2O7D A;  4NFL A;  4ADM A;  1KQ7 A;  2PTQ A;  3F4T A;  3QBP A;  1C3C A;  4HGV A;  1K62 A;  1U16 A;  2X75 A;  5EYV A;  1DCN A;  4NSL A;  4YIK A;  3KDZ A;  3UNV A;  2JAU A;  1YIS A;  4C6G A;  1TJU A;  1Q91 A;  1IW7 D;  2PTR A;  1U15 A;  3F4S A;  3GTD A;  3U13 A;  1TJV A;  4FLC A;  2QGA B;  1XL7 A;  1XMC A;  1JSW A;  1AUW A;  4MUM A;  1B8F A;  4V2Q A;  4APB A;  3NO9 A;  1J3U A;  4BAB A;  1Q92 A;  4APA A;  2E9F A;  1T6P A;  2O7F A;  2VL7 A;  1GKJ A;  1Y2M A;  4C5R A;  4L6A A;  1I0A A;  1Z4M A;  5F91 A;  4WNL A;  3U19 A;  1YFM A;  1YFE A;  1XL8 A;  3CI0 K;  1EB4 A;  2JAR A;  2FEL A;  3KDY A;  3R6V A;  2D28 C;  3RRP A;  1K7W A;  1Z4Q A;  1VDK A;  5D6B A;  1HY0 A;  5M0I A;  1TJW A;  2I7D A;  1T6J A;  1Z4J A;  2VD6 A;  2O7B A;  3OCF A;  1TJ7 A;  3R6Y A;  1GK2 A;  5H8W A;  2NYN A;  2JAO A;  4YIH A;  4L6C A;  2QVE A;  3CRV A;  2YV5 A;  2J91 A;  2VSF A;  1Z4K A;  1Z4P X;  1FUR A;  4E88 A;  1GK3 A;  3NZ4 A;  4NLE A;  2D27 A;  1MH9 A;  1DOF A;  2O6Y A;  3OCE A;  2OHY A;  1U0L A;  3GZH A;  5EYT A;  3E04 A;  1C3U A;  2FUS A;  3RD8 A;  1GKM A;  4C5U A;  2O78 A;  1XLY A;  4IQJ M;  4EEI A;  2FEN A;  1Z4L A;  3CZO A;  5M0J A;  1Z4I A;  3R6Q A;  4EFC A;  4ADL A;  1FUP A;  2HVG A;  2PFM A;  2PTS A;  1FUO A;  1T9H A;  4MWO A;  4MX2 A;  2NYF A;  4A15 A;  2RCN A;  2RJR A;  4BAA A;  4CQ5 A;  2YII A;  1RE5 A;  5HW2 A;  3TV2 A;  3BWV A;  3CRW 1;  1HY1 A;  2O7E A;  3F4R A;  2JAW A;  1W27 A;  4V2R A;  4L57 A;  4C5S A;  1XWO A;  1Q5N A;  2RJS A;  5F92 A;  1FUQ A;  3C8T A;  3BHG A; 
#chains in the Genus database with same CATH homology
 4FFX A;  2O7D A;  4ADM A;  1KQ7 A;  2PTQ A;  3QBP A;  1C3C A;  4HGV A;  1K62 A;  1U16 A;  2X75 A;  5EYV A;  1DCN A;  4NSL A;  3KDZ A;  3UNV A;  1YIS A;  4C6G A;  1TJU A;  2PTR A;  1U15 A;  3GTD A;  1TJV A;  4FLC A;  2QGA B;  1JSW A;  1AUW A;  1B8F A;  4V2Q A;  4APB A;  3NO9 A;  1J3U A;  4BAB A;  4APA A;  2E9F A;  1T6P A;  2O7F A;  1GKJ A;  1Y2M A;  4C5R A;  1I0A A;  5F91 A;  1YFM A;  1YFE A;  1EB4 A;  3KDY A;  3R6V A;  3RRP A;  1K7W A;  1VDK A;  5D6B A;  1HY0 A;  1TJW A;  1T6J A;  2VD6 A;  2O7B A;  3OCF A;  1TJ7 A;  3R6Y A;  1GK2 A;  2NYN A;  2QVE A;  2J91 A;  1FUR A;  3NZ4 A;  1GK3 A;  4NLE A;  1DOF A;  2O6Y A;  3OCE A;  2OHY A;  3GZH A;  5EYT A;  3E04 A;  1C3U A;  2FUS A;  3RD8 A;  1GKM A;  4C5U A;  2O78 A;  4EEI A;  3CZO A;  3R6Q A;  4EFC A;  4ADL A;  1FUP A;  2HVG A;  2PFM A;  2PTS A;  1FUO A;  4MX2 A;  2NYF A;  4CQ5 A;  2RJR A;  4BAA A;  2YII A;  1RE5 A;  5HW2 A;  3TV2 A;  1HY1 A;  2O7E A;  1W27 A;  4V2R A;  4C5S A;  1XWO A;  1Q5N A;  2RJS A;  5F92 A;  1FUQ A;  3C8T A;  3BHG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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