1I0AA

Crystal structure of wild type turkey delta 1 crystallin (eye lens protein)
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
453
structure length
453
Chain Sequence
GRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLDVVDTLTAVLQVATGVISTLQINKENMEKALTPELLSTDLALYLVRKGMPIRQAQTASGKAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYTAVGGTAKSSVTAQIEQLRELLKKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DELTA CRYSTALLIN I
publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
molecule tags Lyase
total genus 181
structure length 453
sequence length 453
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1i0aA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1i0aA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1i0aA02
4FFXA 2X75A 2PTRA 2O7EA 4NSLA 1TJVA 3BHGA 4C5UA 1HY0A 1J3UA 2QVEA 2RJRA 2O7FA 3QBPA 3TV2A 1GK2A 4MX2A 5HW2A 1FUPA 3KDZA 2NYNA 4FLCA 1Q5NA 3R6QA 1RE5A 5EYVA 4C6GA 4BAAA 1U16A 1B8FA 4BABA 1VDKA 1U15A 2O7DA 2QGAB 3GTDA 2RJSA 3GZHA 1AUWA 1I0AA 3R6VA 4EFCA 4ADMA 1T6JA 3CZOA 1C3UA 3C8TA 2J91A 4APAA 1DOFA 1HY1A 2NYFA 1W27A 1GKJA 3OCEA 3NO9A 5F92A 1EB4A 4NLEA 3OCFA 1YFMA 4C5RA 2HVGA 3UNVA 1YISA 1KQ7A 1T6PA 3R6YA 4CQ5A 1GK3A 4C5SA 1TJWA 2OHYA 1FUQA 3E04A 1TJ7A 1K62A 2E9FA 1JSWA 2PTSA 2PTQA 4HGVA 2O7BA 4V2QA 1XWOA 4APBA 2YIIA 1YFEA 1FURA 2VD6A 5EYTA 5D6BA 4V2RA 2FUSA 4EEIA 1FUOA 2O78A 3RRPA 2O6YA 5F91A 3NZ4A 1TJUA 1DCNA 1K7WA 3RD8A 3KDYA 1C3CA 4ADLA 2PFMA 1GKMA 1Y2MA
chains in the Genus database with same CATH superfamily
4FFXA 2X75A 2PTRA 2O7EA 2JAWA 4NSLA 1Z4IA 2D28C 3BHGA 1TJVA 4C5UA 1HY0A 1J3UA 2QVEA 4A15A 2RJRA 2O7FA 3QBPA 3TV2A 1Z4MA 1GK2A 1Q92A 4MX2A 1T9HA 2I7DA 5HW2A 1FUPA 3KDZA 2NYNA 4FLCA 1Q5NA 2FENA 3R6QA 4YIHA 1RE5A 5EYVA 4C6GA 4BAAA 1U16A 4WNLA 1B8FA 4BABA 1VDKA 1U15A 2O7DA 3F4SA 2QGAB 3GTDA 2RJSA 3GZHA 3F4TA 1AUWA 2FELA 1I0AA 2JAUA 4YIKA 3R6VA 4EFCA 3CRVA 2D27A 4ADMA 2RCNA 1MH9A 1T6JA 3CZOA 1C3UA 3C8TA 4MWOA 2J91A 4APAA 4L6AA 1DOFA 1XMCA 1HY1A 2NYFA 1W27A 1GKJA 3OCEA 3CI0K 3NO9A 5H8WA 5F92A 1EB4A 4NLEA 3OCFA 1YFMA 1XMDA 1Q91A 4C5RA 1Z4LA 1U0LA 2HVGA 2JARA 3UNVA 1YISA 1KQ7A 1T6PA 3CRW1 3R6YA 4NFLA 1Z4JA 4CQ5A 5M0JA 1XLYA 1GK3A 2VL7A 3F4RA 4C5SA 1TJWA 1XL8A 1Z4QA 2OHYA 1FUQA 3E04A 1TJ7A 1K62A 4MUMA 2E9FA 2YV5A 1JSWA 2VSFA 2PTSA 4L57A 2JAOA 4IQJM 2PTQA 4HGVA 2O7BA 4V2QA 1XWOA 4L6CA 4APBA 2YIIA 5M0IA 3U19A 3U13A 1YFEA 1FURA 2VD6A 5EYTA 5D6BA 4V2RA 2FUSA 4E88A 1FUOA 4EEIA 2O78A 3BWVA 3RRPA 2O6YA 5F91A 3NZ4A 1TJUA 1XL7A 1DCNA 1Z4PX 1K7WA 3RD8A 3KDYA 1C3CA 4ADLA 2PFMA 1GKMA 1Y2MA 1IW7D 1Z4KA
chains in the Genus database with same CATH topology
4FFXA 2X75A 2PTRA 2O7EA 4NSLA 1TJVA 3BHGA 4C5UA 1HY0A 1J3UA 2QVEA 2RJRA 2O7FA 3QBPA 3TV2A 1GK2A 4MX2A 5HW2A 1FUPA 3KDZA 2NYNA 4FLCA 1Q5NA 3R6QA 1RE5A 5EYVA 4C6GA 4BAAA 1U16A 1B8FA 4BABA 1VDKA 1U15A 2O7DA 2QGAB 3GTDA 2RJSA 3GZHA 1AUWA 1I0AA 3R6VA 4EFCA 4ADMA 1T6JA 3CZOA 1C3UA 3C8TA 2J91A 4APAA 1DOFA 1HY1A 2NYFA 1W27A 1GKJA 3OCEA 3NO9A 5F92A 1EB4A 4NLEA 3OCFA 1YFMA 4C5RA 2HVGA 3UNVA 1YISA 1KQ7A 1T6PA 3R6YA 4CQ5A 1GK3A 4C5SA 1TJWA 2OHYA 1FUQA 3E04A 1TJ7A 1K62A 2E9FA 1JSWA 2PTSA 2PTQA 4HGVA 2O7BA 4V2QA 1XWOA 4APBA 2YIIA 1YFEA 1FURA 2VD6A 5EYTA 5D6BA 4V2RA 2FUSA 4EEIA 1FUOA 2O78A 3RRPA 2O6YA 5F91A 3NZ4A 1TJUA 1DCNA 1K7WA 3RD8A 3KDYA 1C3CA 4ADLA 2PFMA 1GKMA 1Y2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FFX A;  2X75 A;  2PTR A;  2O7E A;  4NSL A;  1TJV A;  3BHG A;  4C5U A;  1HY0 A;  1J3U A;  2QVE A;  2RJR A;  2O7F A;  3QBP A;  3TV2 A;  1GK2 A;  4MX2 A;  5HW2 A;  1FUP A;  3KDZ A;  2NYN A;  4FLC A;  1Q5N A;  3R6Q A;  1RE5 A;  5EYV A;  4C6G A;  4BAA A;  1U16 A;  1B8F A;  4BAB A;  1VDK A;  1U15 A;  2O7D A;  2QGA B;  3GTD A;  2RJS A;  3GZH A;  1AUW A;  1I0A A;  3R6V A;  4EFC A;  4ADM A;  1T6J A;  3CZO A;  1C3U A;  3C8T A;  2J91 A;  4APA A;  1DOF A;  1HY1 A;  2NYF A;  1W27 A;  1GKJ A;  3OCE A;  3NO9 A;  5F92 A;  1EB4 A;  4NLE A;  3OCF A;  1YFM A;  4C5R A;  2HVG A;  3UNV A;  1YIS A;  1KQ7 A;  1T6P A;  3R6Y A;  4CQ5 A;  1GK3 A;  4C5S A;  1TJW A;  2OHY A;  1FUQ A;  3E04 A;  1TJ7 A;  1K62 A;  2E9F A;  1JSW A;  2PTS A;  2PTQ A;  4HGV A;  2O7B A;  4V2Q A;  1XWO A;  4APB A;  2YII A;  1YFE A;  1FUR A;  2VD6 A;  5EYT A;  5D6B A;  4V2R A;  2FUS A;  4EEI A;  1FUO A;  2O78 A;  3RRP A;  2O6Y A;  5F91 A;  3NZ4 A;  1TJU A;  1DCN A;  1K7W A;  3RD8 A;  3KDY A;  1C3C A;  4ADL A;  2PFM A;  1GKM A;  1Y2M A; 
#chains in the Genus database with same CATH topology
 4FFX A;  2X75 A;  2PTR A;  2O7E A;  2JAW A;  4NSL A;  1Z4I A;  2D28 C;  3BHG A;  1TJV A;  4C5U A;  1HY0 A;  1J3U A;  2QVE A;  4A15 A;  2RJR A;  2O7F A;  3QBP A;  3TV2 A;  1Z4M A;  1GK2 A;  1Q92 A;  4MX2 A;  1T9H A;  2I7D A;  5HW2 A;  1FUP A;  3KDZ A;  2NYN A;  4FLC A;  1Q5N A;  2FEN A;  3R6Q A;  4YIH A;  1RE5 A;  5EYV A;  4C6G A;  4BAA A;  1U16 A;  4WNL A;  1B8F A;  4BAB A;  1VDK A;  1U15 A;  2O7D A;  3F4S A;  2QGA B;  3GTD A;  2RJS A;  3GZH A;  3F4T A;  1AUW A;  2FEL A;  1I0A A;  2JAU A;  4YIK A;  3R6V A;  4EFC A;  3CRV A;  2D27 A;  4ADM A;  2RCN A;  1MH9 A;  1T6J A;  3CZO A;  1C3U A;  3C8T A;  4MWO A;  2J91 A;  4APA A;  4L6A A;  1DOF A;  1XMC A;  1HY1 A;  2NYF A;  1W27 A;  1GKJ A;  3OCE A;  3CI0 K;  3NO9 A;  5H8W A;  5F92 A;  1EB4 A;  4NLE A;  3OCF A;  1YFM A;  1XMD A;  1Q91 A;  4C5R A;  1Z4L A;  1U0L A;  2HVG A;  2JAR A;  3UNV A;  1YIS A;  1KQ7 A;  1T6P A;  3CRW 1;  3R6Y A;  4NFL A;  1Z4J A;  4CQ5 A;  5M0J A;  1XLY A;  1GK3 A;  2VL7 A;  3F4R A;  4C5S A;  1TJW A;  1XL8 A;  1Z4Q A;  2OHY A;  1FUQ A;  3E04 A;  1TJ7 A;  1K62 A;  4MUM A;  2E9F A;  2YV5 A;  1JSW A;  2VSF A;  2PTS A;  4L57 A;  2JAO A;  4IQJ M;  2PTQ A;  4HGV A;  2O7B A;  4V2Q A;  1XWO A;  4L6C A;  4APB A;  2YII A;  5M0I A;  3U19 A;  3U13 A;  1YFE A;  1FUR A;  2VD6 A;  5EYT A;  5D6B A;  4V2R A;  2FUS A;  4E88 A;  1FUO A;  4EEI A;  2O78 A;  3BWV A;  3RRP A;  2O6Y A;  5F91 A;  3NZ4 A;  1TJU A;  1XL7 A;  1DCN A;  1Z4P X;  1K7W A;  3RD8 A;  3KDY A;  1C3C A;  4ADL A;  2PFM A;  1GKM A;  1Y2M A;  1IW7 D;  1Z4K A; 
#chains in the Genus database with same CATH homology
 4FFX A;  2X75 A;  2PTR A;  2O7E A;  4NSL A;  1TJV A;  3BHG A;  4C5U A;  1HY0 A;  1J3U A;  2QVE A;  2RJR A;  2O7F A;  3QBP A;  3TV2 A;  1GK2 A;  4MX2 A;  5HW2 A;  1FUP A;  3KDZ A;  2NYN A;  4FLC A;  1Q5N A;  3R6Q A;  1RE5 A;  5EYV A;  4C6G A;  4BAA A;  1U16 A;  1B8F A;  4BAB A;  1VDK A;  1U15 A;  2O7D A;  2QGA B;  3GTD A;  2RJS A;  3GZH A;  1AUW A;  1I0A A;  3R6V A;  4EFC A;  4ADM A;  1T6J A;  3CZO A;  1C3U A;  3C8T A;  2J91 A;  4APA A;  1DOF A;  1HY1 A;  2NYF A;  1W27 A;  1GKJ A;  3OCE A;  3NO9 A;  5F92 A;  1EB4 A;  4NLE A;  3OCF A;  1YFM A;  4C5R A;  2HVG A;  3UNV A;  1YIS A;  1KQ7 A;  1T6P A;  3R6Y A;  4CQ5 A;  1GK3 A;  4C5S A;  1TJW A;  2OHY A;  1FUQ A;  3E04 A;  1TJ7 A;  1K62 A;  2E9F A;  1JSW A;  2PTS A;  2PTQ A;  4HGV A;  2O7B A;  4V2Q A;  1XWO A;  4APB A;  2YII A;  1YFE A;  1FUR A;  2VD6 A;  5EYT A;  5D6B A;  4V2R A;  2FUS A;  4EEI A;  1FUO A;  2O78 A;  3RRP A;  2O6Y A;  5F91 A;  3NZ4 A;  1TJU A;  1DCN A;  1K7W A;  3RD8 A;  3KDY A;  1C3C A;  4ADL A;  2PFM A;  1GKM A;  1Y2M A; 
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similar chains in the pdb database (?% sequence similarity)

 
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