1I0AA

Crystal structure of wild type turkey delta 1 crystallin (eye lens protein)
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
453
structure length
453
Chain Sequence
GRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLDVVDTLTAVLQVATGVISTLQINKENMEKALTPELLSTDLALYLVRKGMPIRQAQTASGKAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYTAVGGTAKSSVTAQIEQLRELLKKQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords DELTA CRYSTALLIN I
publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
total genus 181
structure length 453
sequence length 453
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1i0aA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1i0aA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1i0aA02
3CZOA 2FUSA 2O7DA 4V2QA 1B8FA 3GTDA 4C5SA 3R6VA 2OHYA 4C5UA 4EFCA 1XWOA 1GK2A 3E04A 5D6BA 1YISA 3OCEA 3OCFA 4NSLA 2YIIA 1J3UA 4C6GA 4ADMA 4APBA 1EB4A 1GKJA 4V2RA 4MX2A 2PFMA 1RE5A 4FFXA 1HY0A 2QVEA 1FUOA 2E9FA 3TV2A 2O7FA 1FURA 1Y2MA 4NLEA 3RRPA 1TJVA 1C3CA 1TJ7A 4BABA 2O78A 2PTRA 3GZHA 1TJWA 3NZ4A 3NO9A 1HY1A 1DCNA 3UNVA 4C5RA 2J91A 4FLCA 3QBPA 4APAA 2X75A 3R6YA 4EEIA 2NYNA 1VDKA 3KDYA 1K62A 5HW2A 4ADLA 2PTSA 5F92A 1KQ7A 2O6YA 1GK3A 2RJSA 2VD6A 1AUWA 1DOFA 4HGVA 2PTQA 1JSWA 1U16A 1GKMA 1C3UA 1T6PA 4BAAA 1YFMA 5F91A 1U15A 5EYTA 3RD8A 1T6JA 1FUPA 1K7WA 3BHGA 1FUQA 1W27A 5EYVA 1TJUA 2QGAB 2O7BA 4CQ5A 2NYFA 1YFEA 2RJRA 1Q5NA 3C8TA 3R6QA 2HVGA 3KDZA 2O7EA 1I0AA
chains in the Genus database with same CATH superfamily
1IW7D 3CZOA 2FUSA 1MH9A 1Q91A 2O7DA 4V2QA 4E88A 1B8FA 3BWVA 3GTDA 4C5SA 3R6VA 1XMDA 2OHYA 4C5UA 4L6CA 4EFCA 1XWOA 4L6AA 4IQJM 1GK2A 3CRVA 3E04A 3CRW1 2I7DA 5D6BA 1YISA 4A15A 3OCEA 4YIKA 3F4SA 3OCFA 4NSLA 2YIIA 1J3UA 4C6GA 2D28C 4ADMA 4APBA 1EB4A 1GKJA 1Z4MA 2JAOA 4V2RA 1Z4KA 4MX2A 2PFMA 1RE5A 4L57A 1HY0A 2QVEA 4FFXA 1FUOA 2JARA 2E9FA 3TV2A 2O7FA 2VSFA 1FURA 1Y2MA 4NLEA 3RRPA 2FENA 1TJVA 1C3CA 1TJ7A 4BABA 2O78A 2YV5A 1XMCA 2PTRA 5M0JA 3GZHA 1TJWA 3NZ4A 3NO9A 1Z4JA 1HY1A 2JAUA 1DCNA 3UNVA 1U0LA 4C5RA 2J91A 3F4RA 4FLCA 3QBPA 4APAA 2X75A 3U13A 3R6YA 1XL8A 4EEIA 2NYNA 4MWOA 1VDKA 2VL7A 3KDYA 4WNLA 1Z4QA 1K62A 5HW2A 4ADLA 2PTSA 5F92A 1KQ7A 2O6YA 1GK3A 1Z4IA 2RJSA 2VD6A 1AUWA 1DOFA 1XLYA 4HGVA 2PTQA 4YIHA 1T9HA 1JSWA 1U16A 1GKMA 1C3UA 1T6PA 4BAAA 1YFMA 5F91A 1Q92A 1U15A 1Z4PX 5EYTA 4MUMA 3RD8A 5M0IA 1T6JA 1FUPA 1K7WA 3BHGA 2D27A 2FELA 1FUQA 1W27A 1XL7A 5EYVA 1TJUA 3F4TA 2QGAB 4NFLA 2RCNA 3CI0K 2O7BA 5H8WA 1Z4LA 4CQ5A 2JAWA 2NYFA 1YFEA 2RJRA 1Q5NA 3C8TA 3R6QA 3U19A 2HVGA 3KDZA 2O7EA 1I0AA
chains in the Genus database with same CATH topology
3CZOA 2FUSA 2O7DA 4V2QA 1B8FA 3GTDA 4C5SA 3R6VA 2OHYA 4C5UA 4EFCA 1XWOA 1GK2A 3E04A 5D6BA 1YISA 3OCEA 3OCFA 4NSLA 2YIIA 1J3UA 4C6GA 4ADMA 4APBA 1EB4A 1GKJA 4V2RA 4MX2A 2PFMA 1RE5A 4FFXA 1HY0A 2QVEA 1FUOA 2E9FA 3TV2A 2O7FA 1FURA 1Y2MA 4NLEA 3RRPA 1TJVA 1C3CA 1TJ7A 4BABA 2O78A 2PTRA 3GZHA 1TJWA 3NZ4A 3NO9A 1HY1A 1DCNA 3UNVA 4C5RA 2J91A 4FLCA 3QBPA 4APAA 2X75A 3R6YA 4EEIA 2NYNA 1VDKA 3KDYA 1K62A 5HW2A 4ADLA 2PTSA 5F92A 1KQ7A 2O6YA 1GK3A 2RJSA 2VD6A 1AUWA 1DOFA 4HGVA 2PTQA 1JSWA 1U16A 1GKMA 1C3UA 1T6PA 4BAAA 1YFMA 5F91A 1U15A 5EYTA 3RD8A 1T6JA 1FUPA 1K7WA 3BHGA 1FUQA 1W27A 5EYVA 1TJUA 2QGAB 2O7BA 4CQ5A 2NYFA 1YFEA 2RJRA 1Q5NA 3C8TA 3R6QA 2HVGA 3KDZA 2O7EA 1I0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CZO A;  2FUS A;  2O7D A;  4V2Q A;  1B8F A;  3GTD A;  4C5S A;  3R6V A;  2OHY A;  4C5U A;  4EFC A;  1XWO A;  1GK2 A;  3E04 A;  5D6B A;  1YIS A;  3OCE A;  3OCF A;  4NSL A;  2YII A;  1J3U A;  4C6G A;  4ADM A;  4APB A;  1EB4 A;  1GKJ A;  4V2R A;  4MX2 A;  2PFM A;  1RE5 A;  4FFX A;  1HY0 A;  2QVE A;  1FUO A;  2E9F A;  3TV2 A;  2O7F A;  1FUR A;  1Y2M A;  4NLE A;  3RRP A;  1TJV A;  1C3C A;  1TJ7 A;  4BAB A;  2O78 A;  2PTR A;  3GZH A;  1TJW A;  3NZ4 A;  3NO9 A;  1HY1 A;  1DCN A;  3UNV A;  4C5R A;  2J91 A;  4FLC A;  3QBP A;  4APA A;  2X75 A;  3R6Y A;  4EEI A;  2NYN A;  1VDK A;  3KDY A;  1K62 A;  5HW2 A;  4ADL A;  2PTS A;  5F92 A;  1KQ7 A;  2O6Y A;  1GK3 A;  2RJS A;  2VD6 A;  1AUW A;  1DOF A;  4HGV A;  2PTQ A;  1JSW A;  1U16 A;  1GKM A;  1C3U A;  1T6P A;  4BAA A;  1YFM A;  5F91 A;  1U15 A;  5EYT A;  3RD8 A;  1T6J A;  1FUP A;  1K7W A;  3BHG A;  1FUQ A;  1W27 A;  5EYV A;  1TJU A;  2QGA B;  2O7B A;  4CQ5 A;  2NYF A;  1YFE A;  2RJR A;  1Q5N A;  3C8T A;  3R6Q A;  2HVG A;  3KDZ A;  2O7E A;  1I0A A; 
#chains in the Genus database with same CATH topology
 1IW7 D;  3CZO A;  2FUS A;  1MH9 A;  1Q91 A;  2O7D A;  4V2Q A;  4E88 A;  1B8F A;  3BWV A;  3GTD A;  4C5S A;  3R6V A;  1XMD A;  2OHY A;  4C5U A;  4L6C A;  4EFC A;  1XWO A;  4L6A A;  4IQJ M;  1GK2 A;  3CRV A;  3E04 A;  3CRW 1;  2I7D A;  5D6B A;  1YIS A;  4A15 A;  3OCE A;  4YIK A;  3F4S A;  3OCF A;  4NSL A;  2YII A;  1J3U A;  4C6G A;  2D28 C;  4ADM A;  4APB A;  1EB4 A;  1GKJ A;  1Z4M A;  2JAO A;  4V2R A;  1Z4K A;  4MX2 A;  2PFM A;  1RE5 A;  4L57 A;  1HY0 A;  2QVE A;  4FFX A;  1FUO A;  2JAR A;  2E9F A;  3TV2 A;  2O7F A;  2VSF A;  1FUR A;  1Y2M A;  4NLE A;  3RRP A;  2FEN A;  1TJV A;  1C3C A;  1TJ7 A;  4BAB A;  2O78 A;  2YV5 A;  1XMC A;  2PTR A;  5M0J A;  3GZH A;  1TJW A;  3NZ4 A;  3NO9 A;  1Z4J A;  1HY1 A;  2JAU A;  1DCN A;  3UNV A;  1U0L A;  4C5R A;  2J91 A;  3F4R A;  4FLC A;  3QBP A;  4APA A;  2X75 A;  3U13 A;  3R6Y A;  1XL8 A;  4EEI A;  2NYN A;  4MWO A;  1VDK A;  2VL7 A;  3KDY A;  4WNL A;  1Z4Q A;  1K62 A;  5HW2 A;  4ADL A;  2PTS A;  5F92 A;  1KQ7 A;  2O6Y A;  1GK3 A;  1Z4I A;  2RJS A;  2VD6 A;  1AUW A;  1DOF A;  1XLY A;  4HGV A;  2PTQ A;  4YIH A;  1T9H A;  1JSW A;  1U16 A;  1GKM A;  1C3U A;  1T6P A;  4BAA A;  1YFM A;  5F91 A;  1Q92 A;  1U15 A;  1Z4P X;  5EYT A;  4MUM A;  3RD8 A;  5M0I A;  1T6J A;  1FUP A;  1K7W A;  3BHG A;  2D27 A;  2FEL A;  1FUQ A;  1W27 A;  1XL7 A;  5EYV A;  1TJU A;  3F4T A;  2QGA B;  4NFL A;  2RCN A;  3CI0 K;  2O7B A;  5H8W A;  1Z4L A;  4CQ5 A;  2JAW A;  2NYF A;  1YFE A;  2RJR A;  1Q5N A;  3C8T A;  3R6Q A;  3U19 A;  2HVG A;  3KDZ A;  2O7E A;  1I0A A; 
#chains in the Genus database with same CATH homology
 3CZO A;  2FUS A;  2O7D A;  4V2Q A;  1B8F A;  3GTD A;  4C5S A;  3R6V A;  2OHY A;  4C5U A;  4EFC A;  1XWO A;  1GK2 A;  3E04 A;  5D6B A;  1YIS A;  3OCE A;  3OCF A;  4NSL A;  2YII A;  1J3U A;  4C6G A;  4ADM A;  4APB A;  1EB4 A;  1GKJ A;  4V2R A;  4MX2 A;  2PFM A;  1RE5 A;  4FFX A;  1HY0 A;  2QVE A;  1FUO A;  2E9F A;  3TV2 A;  2O7F A;  1FUR A;  1Y2M A;  4NLE A;  3RRP A;  1TJV A;  1C3C A;  1TJ7 A;  4BAB A;  2O78 A;  2PTR A;  3GZH A;  1TJW A;  3NZ4 A;  3NO9 A;  1HY1 A;  1DCN A;  3UNV A;  4C5R A;  2J91 A;  4FLC A;  3QBP A;  4APA A;  2X75 A;  3R6Y A;  4EEI A;  2NYN A;  1VDK A;  3KDY A;  1K62 A;  5HW2 A;  4ADL A;  2PTS A;  5F92 A;  1KQ7 A;  2O6Y A;  1GK3 A;  2RJS A;  2VD6 A;  1AUW A;  1DOF A;  4HGV A;  2PTQ A;  1JSW A;  1U16 A;  1GKM A;  1C3U A;  1T6P A;  4BAA A;  1YFM A;  5F91 A;  1U15 A;  5EYT A;  3RD8 A;  1T6J A;  1FUP A;  1K7W A;  3BHG A;  1FUQ A;  1W27 A;  5EYV A;  1TJU A;  2QGA B;  2O7B A;  4CQ5 A;  2NYF A;  1YFE A;  2RJR A;  1Q5N A;  3C8T A;  3R6Q A;  2HVG A;  3KDZ A;  2O7E A;  1I0A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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