1I0AA

Crystal structure of wild type turkey delta 1 crystallin (eye lens protein)
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
453
structure length
453
Chain Sequence
b'GRFVGSVDPIMEILSSSISTEQRLTEVDIQASMAYAKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLDVVDTLTAVLQVATGVISTLQINKENMEKALTPELLSTDLALYLVRKGMPIRQAQTASGKAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYTAVGGTAKSSVTAQIEQLRELLKKQK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DELTA CRYSTALLIN I
publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
molecule tags Lyase
total genus 181
structure length 453
sequence length 453
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1i0aA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1i0aA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1i0aA02
5F92A 3KDYA 1K7WA 3TV2A 4EFCA 4FFXA 1T6PA 1KQ7A 5D6BA 2RJRA 2NYNA 1VDKA 3NO9A 4NSLA 4BABA 3QBPA 1GKMA 1HY0A 1C3CA 2E9FA 1DOFA 2O7BA 4C5RA 1DCNA 2NYFA 1JSWA 3R6QA 2PTRA 5EYVA 2RJSA 3GTDA 2VD6A 1YFMA 3OCFA 5F91A 2OHYA 2QVEA 4C5SA 3GZHA 1FURA 3R6YA 1GKJA 1AUWA 4CQ5A 1XWOA 1K62A 1TJUA 2O6YA 4C5UA 1Y2MA 1C3UA 2X75A 4APBA 1FUPA 1T6JA 2HVGA 1TJVA 4V2QA 4MX2A 3E04A 3C8TA 3R6VA 4HGVA 1W27A 1HY1A 2PTSA 2J91A 1U15A 1I0AA 2QGAB 4ADLA 3BHGA 1TJWA 3KDZA 1YFEA 1FUOA 4APAA 1GK2A 1EB4A 1GK3A 4V2RA 4ADMA 4C6GA 3UNVA 3OCEA 4NLEA 2YIIA 4FLCA 1FUQA 1B8FA 1YISA 2PFMA 2O78A 4BAAA 2O7FA 1U16A 2O7EA 3NZ4A 1Q5NA 5HW2A 5EYTA 3RRPA 1TJ7A 4EEIA 3CZOA 1J3UA 2PTQA 2O7DA 3RD8A 2FUSA 1RE5A
chains in the Genus database with same CATH superfamily
5F92A 1T9HA 3KDYA 1K7WA 3TV2A 4EFCA 1Z4PX 2VL7A 1T6PA 1KQ7A 5D6BA 2RJRA 4FFXA 1Z4JA 1Z4KA 4MUMA 1MH9A 2NYNA 1VDKA 3NO9A 4NSLA 4BABA 1IW7D 2JARA 3QBPA 1GKMA 4WNLA 1HY0A 1C3CA 2E9FA 4YIKA 1DOFA 2O7BA 1Z4MA 1DCNA 2NYFA 4C5RA 1JSWA 3R6QA 2PTRA 5EYVA 2RJSA 1U0LA 3GTDA 2VD6A 4YIHA 1YFMA 2YV5A 3OCFA 5F91A 1Z4LA 2OHYA 2QVEA 4C5SA 3GZHA 1FURA 3CI0K 3R6YA 1GKJA 1AUWA 4IQJM 4CQ5A 1XWOA 1K62A 1TJUA 2O6YA 5M0JA 1XL7A 4C5UA 1Y2MA 1C3UA 2X75A 4APBA 1FUPA 1T6JA 2HVGA 5M0IA 1TJVA 1Z4IA 4V2QA 3E04A 3F4TA 3C8TA 4MX2A 3R6VA 4HGVA 2JAWA 1W27A 4L57A 4L6CA 1HY1A 2I7DA 2PTSA 4L6AA 2J91A 1U15A 1I0AA 2QGAB 4ADLA 3U19A 3BHGA 1TJWA 3KDZA 5H8WA 1YFEA 1FUOA 1Z4QA 4APAA 1GK2A 3CRVA 1EB4A 1GK3A 4V2RA 4ADMA 4C6GA 3UNVA 3OCEA 1Q91A 4E88A 4NLEA 2FELA 3CRW1 2FENA 4NFLA 2YIIA 1XL8A 3F4SA 4FLCA 1FUQA 1B8FA 1XMDA 1YISA 4A15A 4MWOA 2PFMA 2O78A 4BAAA 1Q92A 2JAOA 2O7FA 2RCNA 2VSFA 1XLYA 1U16A 2D28C 1XMCA 2O7EA 3NZ4A 1Q5NA 2D27A 5HW2A 5EYTA 3RRPA 3F4RA 1TJ7A 2JAUA 3U13A 4EEIA 3CZOA 1J3UA 2PTQA 2O7DA 3RD8A 2FUSA 1RE5A 3BWVA
chains in the Genus database with same CATH topology
5F92A 3KDYA 1K7WA 3TV2A 4EFCA 4FFXA 1T6PA 1KQ7A 5D6BA 2RJRA 2NYNA 1VDKA 3NO9A 4NSLA 4BABA 3QBPA 1GKMA 1HY0A 1C3CA 2E9FA 1DOFA 2O7BA 4C5RA 1DCNA 2NYFA 1JSWA 3R6QA 2PTRA 5EYVA 2RJSA 3GTDA 2VD6A 1YFMA 3OCFA 5F91A 2OHYA 2QVEA 4C5SA 3GZHA 1FURA 3R6YA 1GKJA 1AUWA 4CQ5A 1XWOA 1K62A 1TJUA 2O6YA 4C5UA 1Y2MA 1C3UA 2X75A 4APBA 1FUPA 1T6JA 2HVGA 1TJVA 4V2QA 4MX2A 3E04A 3C8TA 3R6VA 4HGVA 1W27A 1HY1A 2PTSA 2J91A 1U15A 1I0AA 2QGAB 4ADLA 3BHGA 1TJWA 3KDZA 1YFEA 1FUOA 4APAA 1GK2A 1EB4A 1GK3A 4V2RA 4ADMA 4C6GA 3UNVA 3OCEA 4NLEA 2YIIA 4FLCA 1FUQA 1B8FA 1YISA 2PFMA 2O78A 4BAAA 2O7FA 1U16A 2O7EA 3NZ4A 1Q5NA 5HW2A 5EYTA 3RRPA 1TJ7A 4EEIA 3CZOA 1J3UA 2PTQA 2O7DA 3RD8A 2FUSA 1RE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5F92 A;  3KDY A;  1K7W A;  3TV2 A;  4EFC A;  4FFX A;  1T6P A;  1KQ7 A;  5D6B A;  2RJR A;  2NYN A;  1VDK A;  3NO9 A;  4NSL A;  4BAB A;  3QBP A;  1GKM A;  1HY0 A;  1C3C A;  2E9F A;  1DOF A;  2O7B A;  4C5R A;  1DCN A;  2NYF A;  1JSW A;  3R6Q A;  2PTR A;  5EYV A;  2RJS A;  3GTD A;  2VD6 A;  1YFM A;  3OCF A;  5F91 A;  2OHY A;  2QVE A;  4C5S A;  3GZH A;  1FUR A;  3R6Y A;  1GKJ A;  1AUW A;  4CQ5 A;  1XWO A;  1K62 A;  1TJU A;  2O6Y A;  4C5U A;  1Y2M A;  1C3U A;  2X75 A;  4APB A;  1FUP A;  1T6J A;  2HVG A;  1TJV A;  4V2Q A;  4MX2 A;  3E04 A;  3C8T A;  3R6V A;  4HGV A;  1W27 A;  1HY1 A;  2PTS A;  2J91 A;  1U15 A;  1I0A A;  2QGA B;  4ADL A;  3BHG A;  1TJW A;  3KDZ A;  1YFE A;  1FUO A;  4APA A;  1GK2 A;  1EB4 A;  1GK3 A;  4V2R A;  4ADM A;  4C6G A;  3UNV A;  3OCE A;  4NLE A;  2YII A;  4FLC A;  1FUQ A;  1B8F A;  1YIS A;  2PFM A;  2O78 A;  4BAA A;  2O7F A;  1U16 A;  2O7E A;  3NZ4 A;  1Q5N A;  5HW2 A;  5EYT A;  3RRP A;  1TJ7 A;  4EEI A;  3CZO A;  1J3U A;  2PTQ A;  2O7D A;  3RD8 A;  2FUS A;  1RE5 A; 
#chains in the Genus database with same CATH topology
 5F92 A;  1T9H A;  3KDY A;  1K7W A;  3TV2 A;  4EFC A;  1Z4P X;  2VL7 A;  1T6P A;  1KQ7 A;  5D6B A;  2RJR A;  4FFX A;  1Z4J A;  1Z4K A;  4MUM A;  1MH9 A;  2NYN A;  1VDK A;  3NO9 A;  4NSL A;  4BAB A;  1IW7 D;  2JAR A;  3QBP A;  1GKM A;  4WNL A;  1HY0 A;  1C3C A;  2E9F A;  4YIK A;  1DOF A;  2O7B A;  1Z4M A;  1DCN A;  2NYF A;  4C5R A;  1JSW A;  3R6Q A;  2PTR A;  5EYV A;  2RJS A;  1U0L A;  3GTD A;  2VD6 A;  4YIH A;  1YFM A;  2YV5 A;  3OCF A;  5F91 A;  1Z4L A;  2OHY A;  2QVE A;  4C5S A;  3GZH A;  1FUR A;  3CI0 K;  3R6Y A;  1GKJ A;  1AUW A;  4IQJ M;  4CQ5 A;  1XWO A;  1K62 A;  1TJU A;  2O6Y A;  5M0J A;  1XL7 A;  4C5U A;  1Y2M A;  1C3U A;  2X75 A;  4APB A;  1FUP A;  1T6J A;  2HVG A;  5M0I A;  1TJV A;  1Z4I A;  4V2Q A;  3E04 A;  3F4T A;  3C8T A;  4MX2 A;  3R6V A;  4HGV A;  2JAW A;  1W27 A;  4L57 A;  4L6C A;  1HY1 A;  2I7D A;  2PTS A;  4L6A A;  2J91 A;  1U15 A;  1I0A A;  2QGA B;  4ADL A;  3U19 A;  3BHG A;  1TJW A;  3KDZ A;  5H8W A;  1YFE A;  1FUO A;  1Z4Q A;  4APA A;  1GK2 A;  3CRV A;  1EB4 A;  1GK3 A;  4V2R A;  4ADM A;  4C6G A;  3UNV A;  3OCE A;  1Q91 A;  4E88 A;  4NLE A;  2FEL A;  3CRW 1;  2FEN A;  4NFL A;  2YII A;  1XL8 A;  3F4S A;  4FLC A;  1FUQ A;  1B8F A;  1XMD A;  1YIS A;  4A15 A;  4MWO A;  2PFM A;  2O78 A;  4BAA A;  1Q92 A;  2JAO A;  2O7F A;  2RCN A;  2VSF A;  1XLY A;  1U16 A;  2D28 C;  1XMC A;  2O7E A;  3NZ4 A;  1Q5N A;  2D27 A;  5HW2 A;  5EYT A;  3RRP A;  3F4R A;  1TJ7 A;  2JAU A;  3U13 A;  4EEI A;  3CZO A;  1J3U A;  2PTQ A;  2O7D A;  3RD8 A;  2FUS A;  1RE5 A;  3BWV A; 
#chains in the Genus database with same CATH homology
 5F92 A;  3KDY A;  1K7W A;  3TV2 A;  4EFC A;  4FFX A;  1T6P A;  1KQ7 A;  5D6B A;  2RJR A;  2NYN A;  1VDK A;  3NO9 A;  4NSL A;  4BAB A;  3QBP A;  1GKM A;  1HY0 A;  1C3C A;  2E9F A;  1DOF A;  2O7B A;  4C5R A;  1DCN A;  2NYF A;  1JSW A;  3R6Q A;  2PTR A;  5EYV A;  2RJS A;  3GTD A;  2VD6 A;  1YFM A;  3OCF A;  5F91 A;  2OHY A;  2QVE A;  4C5S A;  3GZH A;  1FUR A;  3R6Y A;  1GKJ A;  1AUW A;  4CQ5 A;  1XWO A;  1K62 A;  1TJU A;  2O6Y A;  4C5U A;  1Y2M A;  1C3U A;  2X75 A;  4APB A;  1FUP A;  1T6J A;  2HVG A;  1TJV A;  4V2Q A;  4MX2 A;  3E04 A;  3C8T A;  3R6V A;  4HGV A;  1W27 A;  1HY1 A;  2PTS A;  2J91 A;  1U15 A;  1I0A A;  2QGA B;  4ADL A;  3BHG A;  1TJW A;  3KDZ A;  1YFE A;  1FUO A;  4APA A;  1GK2 A;  1EB4 A;  1GK3 A;  4V2R A;  4ADM A;  4C6G A;  3UNV A;  3OCE A;  4NLE A;  2YII A;  4FLC A;  1FUQ A;  1B8F A;  1YIS A;  2PFM A;  2O78 A;  4BAA A;  2O7F A;  1U16 A;  2O7E A;  3NZ4 A;  1Q5N A;  5HW2 A;  5EYT A;  3RRP A;  1TJ7 A;  4EEI A;  3CZO A;  1J3U A;  2PTQ A;  2O7D A;  3RD8 A;  2FUS A;  1RE5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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