1RE5A

Crystal structure of 3-carboxy-cis,cis-muconate lactonizing enzyme from pseudomonas putida
Total Genus 157
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
448
structure length
438
Chain Sequence
b'NQLFDAYFTAPAMREIFSDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQARVWVARAVSEHQRFTA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords 3-carboxy-cis,cis-muconate cycloisomerase
publication title Crystal Structure of 3-Carboxy-cis,cis-muconate Lactonizing Enzyme from Pseudomonas putida, a Fumarase Class II Type Cycloisomerase: Enzyme Evolution in Parallel Pathways.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Isomerase
total genus 157
structure length 438
sequence length 448
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1re5A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1re5A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1re5A02
3BHGA 1DOFA 4BABA 3QBPA 1DCNA 2YIIA 1EB4A 2X75A 4C5SA 1J3UA 5EYVA 2OHYA 1VDKA 3KDZA 1C3UA 2QVEA 3NZ4A 3GZHA 4HGVA 1FUQA 2PTSA 2FUSA 5HW2A 3UNVA 4EFCA 4NSLA 2RJSA 3C8TA 1Q5NA 4APAA 1YISA 1I0AA 3GTDA 4V2RA 4MX2A 4FFXA 1HY0A 1JSWA 2O7BA 3KDYA 1YFMA 4C5UA 1U15A 4FLCA 3E04A 1C3CA 4C6GA 1FUPA 1TJUA 2O7DA 4BAAA 3TV2A 2O6YA 4APBA 4EEIA 2NYFA 4C5RA 2E9FA 2O78A 3OCEA 1HY1A 1GKMA 4ADMA 2O7FA 1FURA 2HVGA 4NLEA 2PFMA 3R6VA 1GKJA 1Y2MA 1AUWA 1XWOA 5F92A 5EYTA 2PTQA 3OCFA 1KQ7A 1K62A 3RRPA 1W27A 1YFEA 4ADLA 5F91A 1TJWA 1GK2A 4V2QA 2O7EA 3NO9A 1U16A 3CZOA 1T6JA 2PTRA 3RD8A 1K7WA 5D6BA 2VD6A 2RJRA 1FUOA 2QGAB 3R6QA 2J91A 1B8FA 1TJ7A 1T6PA 1GK3A 2NYNA 4CQ5A 3R6YA 1TJVA 1RE5A
chains in the Genus database with same CATH superfamily
2JAUA 3BHGA 1DOFA 4BABA 3QBPA 4A15A 1DCNA 2YIIA 2FELA 1EB4A 2X75A 4C5SA 2JAOA 1J3UA 5EYVA 2OHYA 1VDKA 2FENA 3KDZA 1Z4IA 1C3UA 2QVEA 3NZ4A 3U19A 1MH9A 3GZHA 4HGVA 1FUQA 4YIHA 2PTSA 3CI0K 2FUSA 5HW2A 3UNVA 4EFCA 4L6AA 4NSLA 2RJSA 2RCNA 3C8TA 1Q5NA 4APAA 1YISA 1I0AA 2D27A 3GTDA 1Z4MA 4V2RA 3CRVA 3U13A 1Q91A 4MX2A 4MWOA 4FFXA 1XMCA 2JAWA 3F4RA 1HY0A 4IQJM 1JSWA 2YV5A 2O7BA 1Z4LA 3KDYA 1XLYA 1YFMA 4C5UA 4E88A 1U15A 4FLCA 3E04A 3CRW1 1C3CA 4C6GA 1FUPA 2D28C 1TJUA 2O7DA 4BAAA 5M0JA 3TV2A 2O6YA 1Z4JA 4APBA 4EEIA 1Q92A 2NYFA 4C5RA 2E9FA 4YIKA 2O78A 1IW7D 3OCEA 1HY1A 1GKMA 2VSFA 4ADMA 2O7FA 1FURA 2HVGA 4NLEA 4MUMA 2PFMA 4L6CA 3R6VA 1GKJA 1Y2MA 1AUWA 1XWOA 1XMDA 1Z4PX 5F92A 2VL7A 5EYTA 2PTQA 3OCFA 1KQ7A 1K62A 3RRPA 1W27A 1YFEA 4ADLA 5F91A 1TJWA 1GK2A 4V2QA 2JARA 2O7EA 3BWVA 3NO9A 4L57A 1U16A 2I7DA 3F4TA 3CZOA 5H8WA 1T6JA 2PTRA 1U0LA 3RD8A 1K7WA 5D6BA 4WNLA 1Z4KA 1XL7A 2VD6A 2RJRA 5M0IA 1FUOA 1XL8A 2QGAB 1Z4QA 3R6QA 2J91A 4NFLA 1B8FA 1TJ7A 3F4SA 1T6PA 1GK3A 2NYNA 1T9HA 4CQ5A 3R6YA 1TJVA 1RE5A
chains in the Genus database with same CATH topology
3BHGA 1DOFA 4BABA 3QBPA 1DCNA 2YIIA 1EB4A 2X75A 4C5SA 1J3UA 5EYVA 2OHYA 1VDKA 3KDZA 1C3UA 2QVEA 3NZ4A 3GZHA 4HGVA 1FUQA 2PTSA 2FUSA 5HW2A 3UNVA 4EFCA 4NSLA 2RJSA 3C8TA 1Q5NA 4APAA 1YISA 1I0AA 3GTDA 4V2RA 4MX2A 4FFXA 1HY0A 1JSWA 2O7BA 3KDYA 1YFMA 4C5UA 1U15A 4FLCA 3E04A 1C3CA 4C6GA 1FUPA 1TJUA 2O7DA 4BAAA 3TV2A 2O6YA 4APBA 4EEIA 2NYFA 4C5RA 2E9FA 2O78A 3OCEA 1HY1A 1GKMA 4ADMA 2O7FA 1FURA 2HVGA 4NLEA 2PFMA 3R6VA 1GKJA 1Y2MA 1AUWA 1XWOA 5F92A 5EYTA 2PTQA 3OCFA 1KQ7A 1K62A 3RRPA 1W27A 1YFEA 4ADLA 5F91A 1TJWA 1GK2A 4V2QA 2O7EA 3NO9A 1U16A 3CZOA 1T6JA 2PTRA 3RD8A 1K7WA 5D6BA 2VD6A 2RJRA 1FUOA 2QGAB 3R6QA 2J91A 1B8FA 1TJ7A 1T6PA 1GK3A 2NYNA 4CQ5A 3R6YA 1TJVA 1RE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BHG A;  1DOF A;  4BAB A;  3QBP A;  1DCN A;  2YII A;  1EB4 A;  2X75 A;  4C5S A;  1J3U A;  5EYV A;  2OHY A;  1VDK A;  3KDZ A;  1C3U A;  2QVE A;  3NZ4 A;  3GZH A;  4HGV A;  1FUQ A;  2PTS A;  2FUS A;  5HW2 A;  3UNV A;  4EFC A;  4NSL A;  2RJS A;  3C8T A;  1Q5N A;  4APA A;  1YIS A;  1I0A A;  3GTD A;  4V2R A;  4MX2 A;  4FFX A;  1HY0 A;  1JSW A;  2O7B A;  3KDY A;  1YFM A;  4C5U A;  1U15 A;  4FLC A;  3E04 A;  1C3C A;  4C6G A;  1FUP A;  1TJU A;  2O7D A;  4BAA A;  3TV2 A;  2O6Y A;  4APB A;  4EEI A;  2NYF A;  4C5R A;  2E9F A;  2O78 A;  3OCE A;  1HY1 A;  1GKM A;  4ADM A;  2O7F A;  1FUR A;  2HVG A;  4NLE A;  2PFM A;  3R6V A;  1GKJ A;  1Y2M A;  1AUW A;  1XWO A;  5F92 A;  5EYT A;  2PTQ A;  3OCF A;  1KQ7 A;  1K62 A;  3RRP A;  1W27 A;  1YFE A;  4ADL A;  5F91 A;  1TJW A;  1GK2 A;  4V2Q A;  2O7E A;  3NO9 A;  1U16 A;  3CZO A;  1T6J A;  2PTR A;  3RD8 A;  1K7W A;  5D6B A;  2VD6 A;  2RJR A;  1FUO A;  2QGA B;  3R6Q A;  2J91 A;  1B8F A;  1TJ7 A;  1T6P A;  1GK3 A;  2NYN A;  4CQ5 A;  3R6Y A;  1TJV A;  1RE5 A; 
#chains in the Genus database with same CATH topology
 2JAU A;  3BHG A;  1DOF A;  4BAB A;  3QBP A;  4A15 A;  1DCN A;  2YII A;  2FEL A;  1EB4 A;  2X75 A;  4C5S A;  2JAO A;  1J3U A;  5EYV A;  2OHY A;  1VDK A;  2FEN A;  3KDZ A;  1Z4I A;  1C3U A;  2QVE A;  3NZ4 A;  3U19 A;  1MH9 A;  3GZH A;  4HGV A;  1FUQ A;  4YIH A;  2PTS A;  3CI0 K;  2FUS A;  5HW2 A;  3UNV A;  4EFC A;  4L6A A;  4NSL A;  2RJS A;  2RCN A;  3C8T A;  1Q5N A;  4APA A;  1YIS A;  1I0A A;  2D27 A;  3GTD A;  1Z4M A;  4V2R A;  3CRV A;  3U13 A;  1Q91 A;  4MX2 A;  4MWO A;  4FFX A;  1XMC A;  2JAW A;  3F4R A;  1HY0 A;  4IQJ M;  1JSW A;  2YV5 A;  2O7B A;  1Z4L A;  3KDY A;  1XLY A;  1YFM A;  4C5U A;  4E88 A;  1U15 A;  4FLC A;  3E04 A;  3CRW 1;  1C3C A;  4C6G A;  1FUP A;  2D28 C;  1TJU A;  2O7D A;  4BAA A;  5M0J A;  3TV2 A;  2O6Y A;  1Z4J A;  4APB A;  4EEI A;  1Q92 A;  2NYF A;  4C5R A;  2E9F A;  4YIK A;  2O78 A;  1IW7 D;  3OCE A;  1HY1 A;  1GKM A;  2VSF A;  4ADM A;  2O7F A;  1FUR A;  2HVG A;  4NLE A;  4MUM A;  2PFM A;  4L6C A;  3R6V A;  1GKJ A;  1Y2M A;  1AUW A;  1XWO A;  1XMD A;  1Z4P X;  5F92 A;  2VL7 A;  5EYT A;  2PTQ A;  3OCF A;  1KQ7 A;  1K62 A;  3RRP A;  1W27 A;  1YFE A;  4ADL A;  5F91 A;  1TJW A;  1GK2 A;  4V2Q A;  2JAR A;  2O7E A;  3BWV A;  3NO9 A;  4L57 A;  1U16 A;  2I7D A;  3F4T A;  3CZO A;  5H8W A;  1T6J A;  2PTR A;  1U0L A;  3RD8 A;  1K7W A;  5D6B A;  4WNL A;  1Z4K A;  1XL7 A;  2VD6 A;  2RJR A;  5M0I A;  1FUO A;  1XL8 A;  2QGA B;  1Z4Q A;  3R6Q A;  2J91 A;  4NFL A;  1B8F A;  1TJ7 A;  3F4S A;  1T6P A;  1GK3 A;  2NYN A;  1T9H A;  4CQ5 A;  3R6Y A;  1TJV A;  1RE5 A; 
#chains in the Genus database with same CATH homology
 3BHG A;  1DOF A;  4BAB A;  3QBP A;  1DCN A;  2YII A;  1EB4 A;  2X75 A;  4C5S A;  1J3U A;  5EYV A;  2OHY A;  1VDK A;  3KDZ A;  1C3U A;  2QVE A;  3NZ4 A;  3GZH A;  4HGV A;  1FUQ A;  2PTS A;  2FUS A;  5HW2 A;  3UNV A;  4EFC A;  4NSL A;  2RJS A;  3C8T A;  1Q5N A;  4APA A;  1YIS A;  1I0A A;  3GTD A;  4V2R A;  4MX2 A;  4FFX A;  1HY0 A;  1JSW A;  2O7B A;  3KDY A;  1YFM A;  4C5U A;  1U15 A;  4FLC A;  3E04 A;  1C3C A;  4C6G A;  1FUP A;  1TJU A;  2O7D A;  4BAA A;  3TV2 A;  2O6Y A;  4APB A;  4EEI A;  2NYF A;  4C5R A;  2E9F A;  2O78 A;  3OCE A;  1HY1 A;  1GKM A;  4ADM A;  2O7F A;  1FUR A;  2HVG A;  4NLE A;  2PFM A;  3R6V A;  1GKJ A;  1Y2M A;  1AUW A;  1XWO A;  5F92 A;  5EYT A;  2PTQ A;  3OCF A;  1KQ7 A;  1K62 A;  3RRP A;  1W27 A;  1YFE A;  4ADL A;  5F91 A;  1TJW A;  1GK2 A;  4V2Q A;  2O7E A;  3NO9 A;  1U16 A;  3CZO A;  1T6J A;  2PTR A;  3RD8 A;  1K7W A;  5D6B A;  2VD6 A;  2RJR A;  1FUO A;  2QGA B;  3R6Q A;  2J91 A;  1B8F A;  1TJ7 A;  1T6P A;  1GK3 A;  2NYN A;  4CQ5 A;  3R6Y A;  1TJV A;  1RE5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...