1RE5A

Crystal structure of 3-carboxy-cis,cis-muconate lactonizing enzyme from pseudomonas putida
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
448
structure length
438
Chain Sequence
NQLFDAYFTAPAMREIFSDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQARVWVARAVSEHQRFTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords 3-carboxy-cis,cis-muconate cycloisomerase
publication title Crystal Structure of 3-Carboxy-cis,cis-muconate Lactonizing Enzyme from Pseudomonas putida, a Fumarase Class II Type Cycloisomerase: Enzyme Evolution in Parallel Pathways.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 157
structure length 438
sequence length 448
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1re5A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1re5A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1re5A02
1U16A 1GKMA 4C6GA 1YISA 3RRPA 3UNVA 2O78A 3C8TA 5HW2A 3QBPA 1VDKA 2PFMA 2PTSA 1K7WA 4APAA 1T6JA 3GZHA 3KDZA 3R6YA 4V2RA 1FUQA 4APBA 2QVEA 1DCNA 1FURA 5EYTA 1KQ7A 2X75A 3BHGA 1DOFA 2PTQA 3E04A 1Q5NA 3R6VA 1HY0A 1AUWA 1K62A 1T6PA 1U15A 2RJSA 1TJWA 4CQ5A 1JSWA 2O7BA 5F91A 3NO9A 1W27A 3GTDA 1YFMA 1TJUA 2NYFA 3NZ4A 2QGAB 2O6YA 1GK2A 4V2QA 1Y2MA 2VD6A 1FUOA 4C5RA 2OHYA 5D6BA 1HY1A 2E9FA 1J3UA 2FUSA 1TJ7A 1RE5A 4C5UA 4BAAA 1GKJA 1C3UA 2NYNA 5F92A 4EEIA 1TJVA 2HVGA 4NSLA 1B8FA 4FFXA 2YIIA 3OCFA 2PTRA 4EFCA 4ADLA 2RJRA 4ADMA 3KDYA 2O7DA 1FUPA 4C5SA 5EYVA 3TV2A 3CZOA 2O7EA 1YFEA 4HGVA 3OCEA 4MX2A 2J91A 1C3CA 4NLEA 2O7FA 1I0AA 3R6QA 4FLCA 1XWOA 1EB4A 4BABA 1GK3A 3RD8A
chains in the Genus database with same CATH superfamily
2RCNA 1U16A 1GKMA 4C6GA 4L6AA 5M0IA 1YISA 4MUMA 3U19A 1IW7D 2VSFA 3RRPA 3UNVA 2JAUA 2JAOA 2O78A 3C8TA 5HW2A 1MH9A 4A15A 3QBPA 1VDKA 2PFMA 2PTSA 1K7WA 5M0JA 4APAA 1Z4KA 1XLYA 4YIHA 1T6JA 3GZHA 3KDZA 3R6YA 3CRW1 3U13A 4L57A 4V2RA 2D28C 1FUQA 4APBA 2YV5A 2QVEA 1DCNA 1FURA 5EYTA 1Z4PX 1XMDA 1KQ7A 1XMCA 2X75A 4YIKA 3BHGA 1DOFA 2PTQA 3E04A 4E88A 1Q5NA 3CI0K 2FENA 3R6VA 1HY0A 1AUWA 1K62A 2D27A 1U15A 1T9HA 1T6PA 2RJSA 1TJWA 4CQ5A 2JAWA 1JSWA 2O7BA 3F4RA 3F4TA 5F91A 1XL7A 3NO9A 1W27A 3GTDA 1YFMA 1TJUA 2NYFA 3NZ4A 2QGAB 1XL8A 2O6YA 1GK2A 4V2QA 3RD8A 1Y2MA 2VD6A 1FUOA 4C5RA 2OHYA 2I7DA 5D6BA 1HY1A 2E9FA 1J3UA 2FUSA 1TJ7A 1Z4IA 1Q91A 4IQJM 1RE5A 2JARA 3BWVA 1Z4QA 1Z4JA 4MWOA 4BAAA 1GKJA 1C3UA 4C5UA 2NYNA 5F92A 1Z4LA 1Z4MA 4EEIA 1TJVA 1U0LA 2HVGA 4NSLA 1B8FA 4WNLA 4FFXA 2YIIA 3OCFA 2PTRA 4EFCA 3CRVA 3F4SA 4ADLA 2RJRA 2VL7A 4ADMA 3KDYA 2O7DA 1FUPA 4C5SA 5EYVA 1Q92A 3TV2A 3CZOA 2O7EA 1YFEA 4HGVA 3OCEA 4MX2A 4NFLA 2J91A 1C3CA 4NLEA 2O7FA 1I0AA 3R6QA 2FELA 4FLCA 1XWOA 1EB4A 4BABA 5H8WA 1GK3A 4L6CA
chains in the Genus database with same CATH topology
1U16A 1GKMA 4C6GA 1YISA 3RRPA 3UNVA 2O78A 3C8TA 5HW2A 3QBPA 1VDKA 2PFMA 2PTSA 1K7WA 4APAA 1T6JA 3GZHA 3KDZA 3R6YA 4V2RA 1FUQA 4APBA 2QVEA 1DCNA 1FURA 5EYTA 1KQ7A 2X75A 3BHGA 1DOFA 2PTQA 3E04A 1Q5NA 3R6VA 1HY0A 1AUWA 1K62A 1T6PA 1U15A 2RJSA 1TJWA 4CQ5A 1JSWA 2O7BA 5F91A 3NO9A 1W27A 3GTDA 1YFMA 1TJUA 2NYFA 3NZ4A 2QGAB 2O6YA 1GK2A 4V2QA 1Y2MA 2VD6A 1FUOA 4C5RA 2OHYA 5D6BA 1HY1A 2E9FA 1J3UA 2FUSA 1TJ7A 1RE5A 4C5UA 4BAAA 1GKJA 1C3UA 2NYNA 5F92A 4EEIA 1TJVA 2HVGA 4NSLA 1B8FA 4FFXA 2YIIA 3OCFA 2PTRA 4EFCA 4ADLA 2RJRA 4ADMA 3KDYA 2O7DA 1FUPA 4C5SA 5EYVA 3TV2A 3CZOA 2O7EA 1YFEA 4HGVA 3OCEA 4MX2A 2J91A 1C3CA 4NLEA 2O7FA 1I0AA 3R6QA 4FLCA 1XWOA 1EB4A 4BABA 1GK3A 3RD8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U16 A;  1GKM A;  4C6G A;  1YIS A;  3RRP A;  3UNV A;  2O78 A;  3C8T A;  5HW2 A;  3QBP A;  1VDK A;  2PFM A;  2PTS A;  1K7W A;  4APA A;  1T6J A;  3GZH A;  3KDZ A;  3R6Y A;  4V2R A;  1FUQ A;  4APB A;  2QVE A;  1DCN A;  1FUR A;  5EYT A;  1KQ7 A;  2X75 A;  3BHG A;  1DOF A;  2PTQ A;  3E04 A;  1Q5N A;  3R6V A;  1HY0 A;  1AUW A;  1K62 A;  1T6P A;  1U15 A;  2RJS A;  1TJW A;  4CQ5 A;  1JSW A;  2O7B A;  5F91 A;  3NO9 A;  1W27 A;  3GTD A;  1YFM A;  1TJU A;  2NYF A;  3NZ4 A;  2QGA B;  2O6Y A;  1GK2 A;  4V2Q A;  1Y2M A;  2VD6 A;  1FUO A;  4C5R A;  2OHY A;  5D6B A;  1HY1 A;  2E9F A;  1J3U A;  2FUS A;  1TJ7 A;  1RE5 A;  4C5U A;  4BAA A;  1GKJ A;  1C3U A;  2NYN A;  5F92 A;  4EEI A;  1TJV A;  2HVG A;  4NSL A;  1B8F A;  4FFX A;  2YII A;  3OCF A;  2PTR A;  4EFC A;  4ADL A;  2RJR A;  4ADM A;  3KDY A;  2O7D A;  1FUP A;  4C5S A;  5EYV A;  3TV2 A;  3CZO A;  2O7E A;  1YFE A;  4HGV A;  3OCE A;  4MX2 A;  2J91 A;  1C3C A;  4NLE A;  2O7F A;  1I0A A;  3R6Q A;  4FLC A;  1XWO A;  1EB4 A;  4BAB A;  1GK3 A;  3RD8 A; 
#chains in the Genus database with same CATH topology
 2RCN A;  1U16 A;  1GKM A;  4C6G A;  4L6A A;  5M0I A;  1YIS A;  4MUM A;  3U19 A;  1IW7 D;  2VSF A;  3RRP A;  3UNV A;  2JAU A;  2JAO A;  2O78 A;  3C8T A;  5HW2 A;  1MH9 A;  4A15 A;  3QBP A;  1VDK A;  2PFM A;  2PTS A;  1K7W A;  5M0J A;  4APA A;  1Z4K A;  1XLY A;  4YIH A;  1T6J A;  3GZH A;  3KDZ A;  3R6Y A;  3CRW 1;  3U13 A;  4L57 A;  4V2R A;  2D28 C;  1FUQ A;  4APB A;  2YV5 A;  2QVE A;  1DCN A;  1FUR A;  5EYT A;  1Z4P X;  1XMD A;  1KQ7 A;  1XMC A;  2X75 A;  4YIK A;  3BHG A;  1DOF A;  2PTQ A;  3E04 A;  4E88 A;  1Q5N A;  3CI0 K;  2FEN A;  3R6V A;  1HY0 A;  1AUW A;  1K62 A;  2D27 A;  1U15 A;  1T9H A;  1T6P A;  2RJS A;  1TJW A;  4CQ5 A;  2JAW A;  1JSW A;  2O7B A;  3F4R A;  3F4T A;  5F91 A;  1XL7 A;  3NO9 A;  1W27 A;  3GTD A;  1YFM A;  1TJU A;  2NYF A;  3NZ4 A;  2QGA B;  1XL8 A;  2O6Y A;  1GK2 A;  4V2Q A;  3RD8 A;  1Y2M A;  2VD6 A;  1FUO A;  4C5R A;  2OHY A;  2I7D A;  5D6B A;  1HY1 A;  2E9F A;  1J3U A;  2FUS A;  1TJ7 A;  1Z4I A;  1Q91 A;  4IQJ M;  1RE5 A;  2JAR A;  3BWV A;  1Z4Q A;  1Z4J A;  4MWO A;  4BAA A;  1GKJ A;  1C3U A;  4C5U A;  2NYN A;  5F92 A;  1Z4L A;  1Z4M A;  4EEI A;  1TJV A;  1U0L A;  2HVG A;  4NSL A;  1B8F A;  4WNL A;  4FFX A;  2YII A;  3OCF A;  2PTR A;  4EFC A;  3CRV A;  3F4S A;  4ADL A;  2RJR A;  2VL7 A;  4ADM A;  3KDY A;  2O7D A;  1FUP A;  4C5S A;  5EYV A;  1Q92 A;  3TV2 A;  3CZO A;  2O7E A;  1YFE A;  4HGV A;  3OCE A;  4MX2 A;  4NFL A;  2J91 A;  1C3C A;  4NLE A;  2O7F A;  1I0A A;  3R6Q A;  2FEL A;  4FLC A;  1XWO A;  1EB4 A;  4BAB A;  5H8W A;  1GK3 A;  4L6C A; 
#chains in the Genus database with same CATH homology
 1U16 A;  1GKM A;  4C6G A;  1YIS A;  3RRP A;  3UNV A;  2O78 A;  3C8T A;  5HW2 A;  3QBP A;  1VDK A;  2PFM A;  2PTS A;  1K7W A;  4APA A;  1T6J A;  3GZH A;  3KDZ A;  3R6Y A;  4V2R A;  1FUQ A;  4APB A;  2QVE A;  1DCN A;  1FUR A;  5EYT A;  1KQ7 A;  2X75 A;  3BHG A;  1DOF A;  2PTQ A;  3E04 A;  1Q5N A;  3R6V A;  1HY0 A;  1AUW A;  1K62 A;  1T6P A;  1U15 A;  2RJS A;  1TJW A;  4CQ5 A;  1JSW A;  2O7B A;  5F91 A;  3NO9 A;  1W27 A;  3GTD A;  1YFM A;  1TJU A;  2NYF A;  3NZ4 A;  2QGA B;  2O6Y A;  1GK2 A;  4V2Q A;  1Y2M A;  2VD6 A;  1FUO A;  4C5R A;  2OHY A;  5D6B A;  1HY1 A;  2E9F A;  1J3U A;  2FUS A;  1TJ7 A;  1RE5 A;  4C5U A;  4BAA A;  1GKJ A;  1C3U A;  2NYN A;  5F92 A;  4EEI A;  1TJV A;  2HVG A;  4NSL A;  1B8F A;  4FFX A;  2YII A;  3OCF A;  2PTR A;  4EFC A;  4ADL A;  2RJR A;  4ADM A;  3KDY A;  2O7D A;  1FUP A;  4C5S A;  5EYV A;  3TV2 A;  3CZO A;  2O7E A;  1YFE A;  4HGV A;  3OCE A;  4MX2 A;  2J91 A;  1C3C A;  4NLE A;  2O7F A;  1I0A A;  3R6Q A;  4FLC A;  1XWO A;  1EB4 A;  4BAB A;  1GK3 A;  3RD8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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