1TJ7A

Structure determination and refinement at 2.44 a resolution of argininosuccinate lyase from e. coli
Total Genus 177
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
177
sequence length
455
structure length
455
Chain Sequence
LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
publication title Structure determination and refinement at 2.44 A resolution of argininosuccinate lyase from Escherichia coli.
pubmed doi rcsb
molecule keywords Argininosuccinate lyase
total genus 177
structure length 455
sequence length 455
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1tj7A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1tj7A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1tj7A02
1W27A 3R6VA 2OHYA 1GKJA 4FFXA 1J3UA 1TJWA 4V2RA 1FURA 3GZHA 1HY0A 1T6PA 3R6YA 3RD8A 5D6BA 2O7EA 4EEIA 4ADMA 2PTRA 4APAA 3GTDA 3C8TA 1VDKA 1U15A 1TJUA 4C5RA 1EB4A 1FUQA 2HVGA 5HW2A 2O6YA 2O7FA 4V2QA 3UNVA 2VD6A 2PTSA 1C3CA 2RJSA 4NSLA 4C5UA 2QVEA 2QGAB 1YFMA 1YFEA 4NLEA 3BHGA 1T6JA 2X75A 1K62A 4ADLA 1AUWA 1FUOA 1GKMA 1GK2A 1FUPA 4C5SA 1TJVA 1KQ7A 4CQ5A 3RRPA 2YIIA 2PTQA 1U16A 3KDYA 2J91A 4C6GA 1HY1A 1RE5A 1K7WA 2O7BA 1GK3A 1C3UA 2NYNA 4BAAA 1I0AA 1Y2MA 1B8FA 3OCFA 4MX2A 2E9FA 2FUSA 1Q5NA 4APBA 4EFCA 2O78A 5F91A 2RJRA 5EYTA 4BABA 1TJ7A 3NO9A 2NYFA 3CZOA 4FLCA 1XWOA 3OCEA 3TV2A 3KDZA 5EYVA 4HGVA 3NZ4A 3QBPA 2O7DA 1DOFA 1JSWA 5F92A 3R6QA 3E04A 1DCNA 2PFMA 1YISA
chains in the Genus database with same CATH superfamily
1W27A 3BWVA 3R6VA 2OHYA 1GKJA 4FFXA 1J3UA 2FENA 2RCNA 1TJWA 1MH9A 4V2RA 1FURA 3F4TA 3GZHA 2JARA 1HY0A 1T6PA 3R6YA 4A15A 2JAUA 1XLYA 4YIHA 3RD8A 5D6BA 2O7EA 4EEIA 3U13A 4ADMA 2PTRA 2I7DA 4APAA 3GTDA 3C8TA 1VDKA 1U15A 1TJUA 2VSFA 4C5RA 1EB4A 1FUQA 2HVGA 5HW2A 2O6YA 2O7FA 4V2QA 1Q91A 2D28C 3UNVA 3F4SA 2PTSA 2VD6A 1XMDA 1C3CA 2RJSA 4NSLA 4C5UA 2QVEA 2YV5A 2QGAB 1YFMA 1YFEA 4NLEA 1XL8A 1Z4JA 3BHGA 1T6JA 2X75A 1K62A 4ADLA 3CI0K 3CRVA 4WNLA 1AUWA 1FUOA 1GKMA 5H8WA 1Z4PX 1Z4MA 1GK2A 1FUPA 1XMCA 4C5SA 2FELA 1TJVA 2D27A 4NFLA 1KQ7A 4CQ5A 1Q92A 1Z4QA 3RRPA 2YIIA 2PTQA 1U16A 3KDYA 5M0JA 2J91A 4C6GA 1HY1A 1RE5A 1K7WA 2VL7A 2O7BA 1GK3A 1XL7A 1C3UA 2NYNA 1Z4IA 3F4RA 4MUMA 4BAAA 1I0AA 2JAOA 1Y2MA 4IQJM 1B8FA 3OCFA 4MX2A 1U0LA 2E9FA 2FUSA 1Q5NA 2JAWA 4APBA 4EFCA 2O78A 1Z4KA 5F91A 2RJRA 5M0IA 5EYTA 4BABA 1TJ7A 3NO9A 2NYFA 1T9HA 3CRW1 3CZOA 4FLCA 1XWOA 3OCEA 4MWOA 4L6CA 3TV2A 3KDZA 5EYVA 4HGVA 1Z4LA 3NZ4A 3QBPA 2O7DA 1DOFA 1JSWA 5F92A 4YIKA 1IW7D 3R6QA 4L57A 3E04A 3U19A 1DCNA 2PFMA 4L6AA 1YISA 4E88A
chains in the Genus database with same CATH topology
1W27A 3R6VA 2OHYA 1GKJA 4FFXA 1J3UA 1TJWA 4V2RA 1FURA 3GZHA 1HY0A 1T6PA 3R6YA 3RD8A 5D6BA 2O7EA 4EEIA 4ADMA 2PTRA 4APAA 3GTDA 3C8TA 1VDKA 1U15A 1TJUA 4C5RA 1EB4A 1FUQA 2HVGA 5HW2A 2O6YA 2O7FA 4V2QA 3UNVA 2VD6A 2PTSA 1C3CA 2RJSA 4NSLA 4C5UA 2QVEA 2QGAB 1YFMA 1YFEA 4NLEA 3BHGA 1T6JA 2X75A 1K62A 4ADLA 1AUWA 1FUOA 1GKMA 1GK2A 1FUPA 4C5SA 1TJVA 1KQ7A 4CQ5A 3RRPA 2YIIA 2PTQA 1U16A 3KDYA 2J91A 4C6GA 1HY1A 1RE5A 1K7WA 2O7BA 1GK3A 1C3UA 2NYNA 4BAAA 1I0AA 1Y2MA 1B8FA 3OCFA 4MX2A 2E9FA 2FUSA 1Q5NA 4APBA 4EFCA 2O78A 5F91A 2RJRA 5EYTA 4BABA 1TJ7A 3NO9A 2NYFA 3CZOA 4FLCA 1XWOA 3OCEA 3TV2A 3KDZA 5EYVA 4HGVA 3NZ4A 3QBPA 2O7DA 1DOFA 1JSWA 5F92A 3R6QA 3E04A 1DCNA 2PFMA 1YISA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W27 A;  3R6V A;  2OHY A;  1GKJ A;  4FFX A;  1J3U A;  1TJW A;  4V2R A;  1FUR A;  3GZH A;  1HY0 A;  1T6P A;  3R6Y A;  3RD8 A;  5D6B A;  2O7E A;  4EEI A;  4ADM A;  2PTR A;  4APA A;  3GTD A;  3C8T A;  1VDK A;  1U15 A;  1TJU A;  4C5R A;  1EB4 A;  1FUQ A;  2HVG A;  5HW2 A;  2O6Y A;  2O7F A;  4V2Q A;  3UNV A;  2VD6 A;  2PTS A;  1C3C A;  2RJS A;  4NSL A;  4C5U A;  2QVE A;  2QGA B;  1YFM A;  1YFE A;  4NLE A;  3BHG A;  1T6J A;  2X75 A;  1K62 A;  4ADL A;  1AUW A;  1FUO A;  1GKM A;  1GK2 A;  1FUP A;  4C5S A;  1TJV A;  1KQ7 A;  4CQ5 A;  3RRP A;  2YII A;  2PTQ A;  1U16 A;  3KDY A;  2J91 A;  4C6G A;  1HY1 A;  1RE5 A;  1K7W A;  2O7B A;  1GK3 A;  1C3U A;  2NYN A;  4BAA A;  1I0A A;  1Y2M A;  1B8F A;  3OCF A;  4MX2 A;  2E9F A;  2FUS A;  1Q5N A;  4APB A;  4EFC A;  2O78 A;  5F91 A;  2RJR A;  5EYT A;  4BAB A;  1TJ7 A;  3NO9 A;  2NYF A;  3CZO A;  4FLC A;  1XWO A;  3OCE A;  3TV2 A;  3KDZ A;  5EYV A;  4HGV A;  3NZ4 A;  3QBP A;  2O7D A;  1DOF A;  1JSW A;  5F92 A;  3R6Q A;  3E04 A;  1DCN A;  2PFM A;  1YIS A; 
#chains in the Genus database with same CATH topology
 1W27 A;  3BWV A;  3R6V A;  2OHY A;  1GKJ A;  4FFX A;  1J3U A;  2FEN A;  2RCN A;  1TJW A;  1MH9 A;  4V2R A;  1FUR A;  3F4T A;  3GZH A;  2JAR A;  1HY0 A;  1T6P A;  3R6Y A;  4A15 A;  2JAU A;  1XLY A;  4YIH A;  3RD8 A;  5D6B A;  2O7E A;  4EEI A;  3U13 A;  4ADM A;  2PTR A;  2I7D A;  4APA A;  3GTD A;  3C8T A;  1VDK A;  1U15 A;  1TJU A;  2VSF A;  4C5R A;  1EB4 A;  1FUQ A;  2HVG A;  5HW2 A;  2O6Y A;  2O7F A;  4V2Q A;  1Q91 A;  2D28 C;  3UNV A;  3F4S A;  2PTS A;  2VD6 A;  1XMD A;  1C3C A;  2RJS A;  4NSL A;  4C5U A;  2QVE A;  2YV5 A;  2QGA B;  1YFM A;  1YFE A;  4NLE A;  1XL8 A;  1Z4J A;  3BHG A;  1T6J A;  2X75 A;  1K62 A;  4ADL A;  3CI0 K;  3CRV A;  4WNL A;  1AUW A;  1FUO A;  1GKM A;  5H8W A;  1Z4P X;  1Z4M A;  1GK2 A;  1FUP A;  1XMC A;  4C5S A;  2FEL A;  1TJV A;  2D27 A;  4NFL A;  1KQ7 A;  4CQ5 A;  1Q92 A;  1Z4Q A;  3RRP A;  2YII A;  2PTQ A;  1U16 A;  3KDY A;  5M0J A;  2J91 A;  4C6G A;  1HY1 A;  1RE5 A;  1K7W A;  2VL7 A;  2O7B A;  1GK3 A;  1XL7 A;  1C3U A;  2NYN A;  1Z4I A;  3F4R A;  4MUM A;  4BAA A;  1I0A A;  2JAO A;  1Y2M A;  4IQJ M;  1B8F A;  3OCF A;  4MX2 A;  1U0L A;  2E9F A;  2FUS A;  1Q5N A;  2JAW A;  4APB A;  4EFC A;  2O78 A;  1Z4K A;  5F91 A;  2RJR A;  5M0I A;  5EYT A;  4BAB A;  1TJ7 A;  3NO9 A;  2NYF A;  1T9H A;  3CRW 1;  3CZO A;  4FLC A;  1XWO A;  3OCE A;  4MWO A;  4L6C A;  3TV2 A;  3KDZ A;  5EYV A;  4HGV A;  1Z4L A;  3NZ4 A;  3QBP A;  2O7D A;  1DOF A;  1JSW A;  5F92 A;  4YIK A;  1IW7 D;  3R6Q A;  4L57 A;  3E04 A;  3U19 A;  1DCN A;  2PFM A;  4L6A A;  1YIS A;  4E88 A; 
#chains in the Genus database with same CATH homology
 1W27 A;  3R6V A;  2OHY A;  1GKJ A;  4FFX A;  1J3U A;  1TJW A;  4V2R A;  1FUR A;  3GZH A;  1HY0 A;  1T6P A;  3R6Y A;  3RD8 A;  5D6B A;  2O7E A;  4EEI A;  4ADM A;  2PTR A;  4APA A;  3GTD A;  3C8T A;  1VDK A;  1U15 A;  1TJU A;  4C5R A;  1EB4 A;  1FUQ A;  2HVG A;  5HW2 A;  2O6Y A;  2O7F A;  4V2Q A;  3UNV A;  2VD6 A;  2PTS A;  1C3C A;  2RJS A;  4NSL A;  4C5U A;  2QVE A;  2QGA B;  1YFM A;  1YFE A;  4NLE A;  3BHG A;  1T6J A;  2X75 A;  1K62 A;  4ADL A;  1AUW A;  1FUO A;  1GKM A;  1GK2 A;  1FUP A;  4C5S A;  1TJV A;  1KQ7 A;  4CQ5 A;  3RRP A;  2YII A;  2PTQ A;  1U16 A;  3KDY A;  2J91 A;  4C6G A;  1HY1 A;  1RE5 A;  1K7W A;  2O7B A;  1GK3 A;  1C3U A;  2NYN A;  4BAA A;  1I0A A;  1Y2M A;  1B8F A;  3OCF A;  4MX2 A;  2E9F A;  2FUS A;  1Q5N A;  4APB A;  4EFC A;  2O78 A;  5F91 A;  2RJR A;  5EYT A;  4BAB A;  1TJ7 A;  3NO9 A;  2NYF A;  3CZO A;  4FLC A;  1XWO A;  3OCE A;  3TV2 A;  3KDZ A;  5EYV A;  4HGV A;  3NZ4 A;  3QBP A;  2O7D A;  1DOF A;  1JSW A;  5F92 A;  3R6Q A;  3E04 A;  1DCN A;  2PFM A;  1YIS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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