1TJ7A

Structure determination and refinement at 2.44 a resolution of argininosuccinate lyase from e. coli
Total Genus 177
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
177
sequence length
455
structure length
455
Chain Sequence
LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARLG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Argininosuccinate lyase
publication title Structure determination and refinement at 2.44 A resolution of argininosuccinate lyase from Escherichia coli.
pubmed doi rcsb
molecule tags Lyase
total genus 177
structure length 455
sequence length 455
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2004-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1tj7A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1tj7A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1tj7A02
1VDKA 1C3UA 3GZHA 4HGVA 2HVGA 1GKJA 2QGAB 2NYFA 3KDYA 5F92A 4APBA 2O7DA 3OCEA 2X75A 2PTRA 5HW2A 1T6PA 2NYNA 1FUPA 1DOFA 4FLCA 2RJSA 2PTQA 2VD6A 1C3CA 5F91A 4CQ5A 2O7EA 4APAA 3R6QA 5EYTA 4NSLA 2QVEA 5D6BA 1TJWA 3C8TA 1KQ7A 1W27A 3CZOA 1I0AA 1GK2A 1B8FA 4BABA 4C6GA 2O6YA 1HY1A 1HY0A 2YIIA 2O7FA 3TV2A 3QBPA 3E04A 1J3UA 1TJ7A 1FURA 4BAAA 4C5RA 3RRPA 2FUSA 4EEIA 1EB4A 4ADLA 4V2RA 3R6VA 2PTSA 1FUOA 2E9FA 4EFCA 4V2QA 2RJRA 1GK3A 1TJVA 3NZ4A 1Q5NA 2J91A 1YFMA 2O7BA 4FFXA 1DCNA 1TJUA 3KDZA 1AUWA 2PFMA 4MX2A 3NO9A 4ADMA 1XWOA 3RD8A 4NLEA 2OHYA 1U16A 1JSWA 1YISA 4C5UA 1RE5A 1U15A 1YFEA 1K62A 3OCFA 3GTDA 3UNVA 2O78A 5EYVA 1T6JA 4C5SA 3R6YA 1K7WA 3BHGA 1Y2MA 1FUQA 1GKMA
chains in the Genus database with same CATH superfamily
1U0LA 1VDKA 4E88A 1C3UA 3GZHA 4HGVA 4L6CA 2HVGA 4WNLA 1GKJA 2QGAB 2NYFA 3KDYA 3F4TA 5F92A 4APBA 2O7DA 2VSFA 3OCEA 2X75A 2PTRA 4NFLA 5HW2A 1IW7D 1T6PA 2NYNA 1FUPA 1DOFA 4FLCA 2D27A 2RJSA 2PTQA 4MUMA 2VD6A 3U19A 4YIKA 1C3CA 1MH9A 5F91A 4CQ5A 2O7EA 2VL7A 2JAUA 3CRVA 5M0IA 4APAA 3R6QA 5EYTA 2D28C 4NSLA 2QVEA 5D6BA 1TJWA 3C8TA 1KQ7A 5M0JA 1W27A 3CZOA 1I0AA 1GK2A 3CRW1 2RCNA 1B8FA 4BABA 4C6GA 2O6YA 1HY1A 1Z4QA 1HY0A 3F4RA 1XL8A 3BWVA 1T9HA 2O7FA 2YIIA 1Z4PX 2JAWA 3QBPA 1J3UA 3E04A 1TJ7A 1FURA 3TV2A 4BAAA 4C5RA 3RRPA 2FUSA 4EEIA 1EB4A 2JAOA 4ADLA 1XL7A 4V2RA 1Z4LA 3R6VA 2PTSA 1XMCA 1FUOA 2E9FA 4EFCA 4V2QA 2RJRA 2FENA 3F4SA 1GK3A 1TJVA 4IQJM 3U13A 3NZ4A 1Z4JA 1XMDA 1Q5NA 2J91A 1Q91A 1YFMA 2O7BA 4FFXA 1DCNA 3CI0K 2FELA 4L57A 1TJUA 2I7DA 4YIHA 2JARA 3KDZA 1AUWA 4A15A 2PFMA 4MX2A 2YV5A 3NO9A 4ADMA 5H8WA 1XWOA 3RD8A 4NLEA 2OHYA 1U16A 1JSWA 1YISA 4C5UA 1RE5A 1U15A 4L6AA 1Z4KA 1YFEA 1K62A 3OCFA 3GTDA 3UNVA 1XLYA 2O78A 5EYVA 4MWOA 1T6JA 4C5SA 1Z4MA 1K7WA 3R6YA 3BHGA 1Z4IA 1Y2MA 1FUQA 1Q92A 1GKMA
chains in the Genus database with same CATH topology
1VDKA 1C3UA 3GZHA 4HGVA 2HVGA 1GKJA 2QGAB 2NYFA 3KDYA 5F92A 4APBA 2O7DA 3OCEA 2X75A 2PTRA 5HW2A 1T6PA 2NYNA 1FUPA 1DOFA 4FLCA 2RJSA 2PTQA 2VD6A 1C3CA 5F91A 4CQ5A 2O7EA 4APAA 3R6QA 5EYTA 4NSLA 2QVEA 5D6BA 1TJWA 3C8TA 1KQ7A 1W27A 3CZOA 1I0AA 1GK2A 1B8FA 4BABA 4C6GA 2O6YA 1HY1A 1HY0A 2YIIA 2O7FA 3TV2A 3QBPA 3E04A 1J3UA 1TJ7A 1FURA 4BAAA 4C5RA 3RRPA 2FUSA 4EEIA 1EB4A 4ADLA 4V2RA 3R6VA 2PTSA 1FUOA 2E9FA 4EFCA 4V2QA 2RJRA 1GK3A 1TJVA 3NZ4A 1Q5NA 2J91A 1YFMA 2O7BA 4FFXA 1DCNA 1TJUA 3KDZA 1AUWA 2PFMA 4MX2A 3NO9A 4ADMA 1XWOA 3RD8A 4NLEA 2OHYA 1U16A 1JSWA 1YISA 4C5UA 1RE5A 1U15A 1YFEA 1K62A 3OCFA 3GTDA 3UNVA 2O78A 5EYVA 1T6JA 4C5SA 3R6YA 1K7WA 3BHGA 1Y2MA 1FUQA 1GKMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VDK A;  1C3U A;  3GZH A;  4HGV A;  2HVG A;  1GKJ A;  2QGA B;  2NYF A;  3KDY A;  5F92 A;  4APB A;  2O7D A;  3OCE A;  2X75 A;  2PTR A;  5HW2 A;  1T6P A;  2NYN A;  1FUP A;  1DOF A;  4FLC A;  2RJS A;  2PTQ A;  2VD6 A;  1C3C A;  5F91 A;  4CQ5 A;  2O7E A;  4APA A;  3R6Q A;  5EYT A;  4NSL A;  2QVE A;  5D6B A;  1TJW A;  3C8T A;  1KQ7 A;  1W27 A;  3CZO A;  1I0A A;  1GK2 A;  1B8F A;  4BAB A;  4C6G A;  2O6Y A;  1HY1 A;  1HY0 A;  2YII A;  2O7F A;  3TV2 A;  3QBP A;  3E04 A;  1J3U A;  1TJ7 A;  1FUR A;  4BAA A;  4C5R A;  3RRP A;  2FUS A;  4EEI A;  1EB4 A;  4ADL A;  4V2R A;  3R6V A;  2PTS A;  1FUO A;  2E9F A;  4EFC A;  4V2Q A;  2RJR A;  1GK3 A;  1TJV A;  3NZ4 A;  1Q5N A;  2J91 A;  1YFM A;  2O7B A;  4FFX A;  1DCN A;  1TJU A;  3KDZ A;  1AUW A;  2PFM A;  4MX2 A;  3NO9 A;  4ADM A;  1XWO A;  3RD8 A;  4NLE A;  2OHY A;  1U16 A;  1JSW A;  1YIS A;  4C5U A;  1RE5 A;  1U15 A;  1YFE A;  1K62 A;  3OCF A;  3GTD A;  3UNV A;  2O78 A;  5EYV A;  1T6J A;  4C5S A;  3R6Y A;  1K7W A;  3BHG A;  1Y2M A;  1FUQ A;  1GKM A; 
#chains in the Genus database with same CATH topology
 1U0L A;  1VDK A;  4E88 A;  1C3U A;  3GZH A;  4HGV A;  4L6C A;  2HVG A;  4WNL A;  1GKJ A;  2QGA B;  2NYF A;  3KDY A;  3F4T A;  5F92 A;  4APB A;  2O7D A;  2VSF A;  3OCE A;  2X75 A;  2PTR A;  4NFL A;  5HW2 A;  1IW7 D;  1T6P A;  2NYN A;  1FUP A;  1DOF A;  4FLC A;  2D27 A;  2RJS A;  2PTQ A;  4MUM A;  2VD6 A;  3U19 A;  4YIK A;  1C3C A;  1MH9 A;  5F91 A;  4CQ5 A;  2O7E A;  2VL7 A;  2JAU A;  3CRV A;  5M0I A;  4APA A;  3R6Q A;  5EYT A;  2D28 C;  4NSL A;  2QVE A;  5D6B A;  1TJW A;  3C8T A;  1KQ7 A;  5M0J A;  1W27 A;  3CZO A;  1I0A A;  1GK2 A;  3CRW 1;  2RCN A;  1B8F A;  4BAB A;  4C6G A;  2O6Y A;  1HY1 A;  1Z4Q A;  1HY0 A;  3F4R A;  1XL8 A;  3BWV A;  1T9H A;  2O7F A;  2YII A;  1Z4P X;  2JAW A;  3QBP A;  1J3U A;  3E04 A;  1TJ7 A;  1FUR A;  3TV2 A;  4BAA A;  4C5R A;  3RRP A;  2FUS A;  4EEI A;  1EB4 A;  2JAO A;  4ADL A;  1XL7 A;  4V2R A;  1Z4L A;  3R6V A;  2PTS A;  1XMC A;  1FUO A;  2E9F A;  4EFC A;  4V2Q A;  2RJR A;  2FEN A;  3F4S A;  1GK3 A;  1TJV A;  4IQJ M;  3U13 A;  3NZ4 A;  1Z4J A;  1XMD A;  1Q5N A;  2J91 A;  1Q91 A;  1YFM A;  2O7B A;  4FFX A;  1DCN A;  3CI0 K;  2FEL A;  4L57 A;  1TJU A;  2I7D A;  4YIH A;  2JAR A;  3KDZ A;  1AUW A;  4A15 A;  2PFM A;  4MX2 A;  2YV5 A;  3NO9 A;  4ADM A;  5H8W A;  1XWO A;  3RD8 A;  4NLE A;  2OHY A;  1U16 A;  1JSW A;  1YIS A;  4C5U A;  1RE5 A;  1U15 A;  4L6A A;  1Z4K A;  1YFE A;  1K62 A;  3OCF A;  3GTD A;  3UNV A;  1XLY A;  2O78 A;  5EYV A;  4MWO A;  1T6J A;  4C5S A;  1Z4M A;  1K7W A;  3R6Y A;  3BHG A;  1Z4I A;  1Y2M A;  1FUQ A;  1Q92 A;  1GKM A; 
#chains in the Genus database with same CATH homology
 1VDK A;  1C3U A;  3GZH A;  4HGV A;  2HVG A;  1GKJ A;  2QGA B;  2NYF A;  3KDY A;  5F92 A;  4APB A;  2O7D A;  3OCE A;  2X75 A;  2PTR A;  5HW2 A;  1T6P A;  2NYN A;  1FUP A;  1DOF A;  4FLC A;  2RJS A;  2PTQ A;  2VD6 A;  1C3C A;  5F91 A;  4CQ5 A;  2O7E A;  4APA A;  3R6Q A;  5EYT A;  4NSL A;  2QVE A;  5D6B A;  1TJW A;  3C8T A;  1KQ7 A;  1W27 A;  3CZO A;  1I0A A;  1GK2 A;  1B8F A;  4BAB A;  4C6G A;  2O6Y A;  1HY1 A;  1HY0 A;  2YII A;  2O7F A;  3TV2 A;  3QBP A;  3E04 A;  1J3U A;  1TJ7 A;  1FUR A;  4BAA A;  4C5R A;  3RRP A;  2FUS A;  4EEI A;  1EB4 A;  4ADL A;  4V2R A;  3R6V A;  2PTS A;  1FUO A;  2E9F A;  4EFC A;  4V2Q A;  2RJR A;  1GK3 A;  1TJV A;  3NZ4 A;  1Q5N A;  2J91 A;  1YFM A;  2O7B A;  4FFX A;  1DCN A;  1TJU A;  3KDZ A;  1AUW A;  2PFM A;  4MX2 A;  3NO9 A;  4ADM A;  1XWO A;  3RD8 A;  4NLE A;  2OHY A;  1U16 A;  1JSW A;  1YIS A;  4C5U A;  1RE5 A;  1U15 A;  1YFE A;  1K62 A;  3OCF A;  3GTD A;  3UNV A;  2O78 A;  5EYV A;  1T6J A;  4C5S A;  3R6Y A;  1K7W A;  3BHG A;  1Y2M A;  1FUQ A;  1GKM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...