1K7WA

Crystal structure of s283a duck delta 2 crystallin mutant
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
449
structure length
449
Chain Sequence
TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKEQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords delta 2 crystallin
publication title Mutational analysis of duck delta 2 crystallin and the structure of an inactive mutant with bound substrate provide insight into the enzymatic mechanism of argininosuccinate lyase.
pubmed doi rcsb
source organism Anas platyrhynchos
total genus 186
structure length 449
sequence length 449
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1k7wA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1k7wA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1k7wA02
1YISA 3OCFA 1TJVA 2O7FA 2O7DA 3QBPA 4NSLA 5EYVA 2O7EA 2HVGA 2VD6A 4C5RA 2E9FA 1K7WA 2RJSA 1W27A 4EFCA 3RD8A 1GK2A 4FLCA 2PFMA 2PTRA 1U16A 1DCNA 2OHYA 1JSWA 1TJ7A 1TJWA 4APBA 1VDKA 1FUQA 1DOFA 2O6YA 1Q5NA 1YFEA 3GTDA 2O7BA 3NZ4A 1T6JA 1Y2MA 1AUWA 3KDZA 2PTSA 1J3UA 3C8TA 3BHGA 3CZOA 1B8FA 1HY1A 1HY0A 5D6BA 5F92A 3UNVA 1GK3A 2NYNA 3TV2A 1GKJA 2NYFA 1I0AA 1EB4A 4ADMA 4V2QA 1YFMA 1T6PA 2QVEA 2YIIA 3RRPA 4BAAA 4FFXA 1FUOA 1K62A 4C6GA 4HGVA 4V2RA 4C5SA 1TJUA 1XWOA 4EEIA 4MX2A 5HW2A 4CQ5A 5F91A 1KQ7A 3KDYA 1C3CA 4C5UA 2X75A 2FUSA 2QGAB 3NO9A 3R6YA 1FUPA 4NLEA 2J91A 2RJRA 4APAA 4ADLA 3GZHA 5EYTA 3R6VA 1GKMA 1RE5A 1FURA 2O78A 3OCEA 2PTQA 3E04A 1U15A 4BABA 1C3UA 3R6QA
chains in the Genus database with same CATH superfamily
5M0JA 1YISA 3OCFA 2D28C 1Z4LA 1Z4IA 3BWVA 1TJVA 2O7FA 2O7DA 3QBPA 4NSLA 5EYVA 4L57A 2O7EA 2HVGA 2VD6A 4C5RA 2E9FA 1K7WA 2RJSA 1W27A 1XMDA 4EFCA 1XMCA 3RD8A 1GK2A 4FLCA 2PFMA 2PTRA 1U16A 1Z4QA 3CI0K 1DCNA 2OHYA 4NFLA 1JSWA 1MH9A 1TJ7A 2JARA 1TJWA 4APBA 1VDKA 1FUQA 1DOFA 4L6AA 1T9HA 2O6YA 1Z4JA 1Q5NA 1XLYA 1Z4KA 4YIKA 1YFEA 3GTDA 2O7BA 3NZ4A 1T6JA 1Y2MA 1AUWA 3KDZA 2PTSA 4MWOA 1J3UA 2RCNA 2FELA 2VL7A 3C8TA 4L6CA 4E88A 3BHGA 1XL7A 3F4RA 2VSFA 3CZOA 1B8FA 1HY1A 2JAUA 1HY0A 1Q92A 3U13A 5D6BA 5F92A 3UNVA 4YIHA 1GK3A 2NYNA 3TV2A 1GKJA 2NYFA 1Z4PX 1I0AA 2D27A 1EB4A 4ADMA 4V2QA 1YFMA 1T6PA 2QVEA 2JAWA 2YIIA 3RRPA 4BAAA 1Q91A 1FUOA 4IQJM 4FFXA 1K62A 4C6GA 3U19A 4HGVA 1Z4MA 4V2RA 4C5SA 1TJUA 1XWOA 4EEIA 2JAOA 4MX2A 5HW2A 3CRW1 4CQ5A 5F91A 5M0IA 1KQ7A 3KDYA 5H8WA 1C3CA 4C5UA 2I7DA 2X75A 4WNLA 2FUSA 2QGAB 3NO9A 3R6YA 1FUPA 4NLEA 3F4TA 2J91A 2RJRA 4APAA 4ADLA 3GZHA 5EYTA 3R6VA 1GKMA 2FENA 1RE5A 4MUMA 3F4SA 1XL8A 1FURA 1U0LA 2O78A 3CRVA 3OCEA 1IW7D 2PTQA 3E04A 1U15A 4BABA 1C3UA 3R6QA 4A15A 2YV5A
chains in the Genus database with same CATH topology
1YISA 3OCFA 1TJVA 2O7FA 2O7DA 3QBPA 4NSLA 5EYVA 2O7EA 2HVGA 2VD6A 4C5RA 2E9FA 1K7WA 2RJSA 1W27A 4EFCA 3RD8A 1GK2A 4FLCA 2PFMA 2PTRA 1U16A 1DCNA 2OHYA 1JSWA 1TJ7A 1TJWA 4APBA 1VDKA 1FUQA 1DOFA 2O6YA 1Q5NA 1YFEA 3GTDA 2O7BA 3NZ4A 1T6JA 1Y2MA 1AUWA 3KDZA 2PTSA 1J3UA 3C8TA 3BHGA 3CZOA 1B8FA 1HY1A 1HY0A 5D6BA 5F92A 3UNVA 1GK3A 2NYNA 3TV2A 1GKJA 2NYFA 1I0AA 1EB4A 4ADMA 4V2QA 1YFMA 1T6PA 2QVEA 2YIIA 3RRPA 4BAAA 4FFXA 1FUOA 1K62A 4C6GA 4HGVA 4V2RA 4C5SA 1TJUA 1XWOA 4EEIA 4MX2A 5HW2A 4CQ5A 5F91A 1KQ7A 3KDYA 1C3CA 4C5UA 2X75A 2FUSA 2QGAB 3NO9A 3R6YA 1FUPA 4NLEA 2J91A 2RJRA 4APAA 4ADLA 3GZHA 5EYTA 3R6VA 1GKMA 1RE5A 1FURA 2O78A 3OCEA 2PTQA 3E04A 1U15A 4BABA 1C3UA 3R6QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YIS A;  3OCF A;  1TJV A;  2O7F A;  2O7D A;  3QBP A;  4NSL A;  5EYV A;  2O7E A;  2HVG A;  2VD6 A;  4C5R A;  2E9F A;  1K7W A;  2RJS A;  1W27 A;  4EFC A;  3RD8 A;  1GK2 A;  4FLC A;  2PFM A;  2PTR A;  1U16 A;  1DCN A;  2OHY A;  1JSW A;  1TJ7 A;  1TJW A;  4APB A;  1VDK A;  1FUQ A;  1DOF A;  2O6Y A;  1Q5N A;  1YFE A;  3GTD A;  2O7B A;  3NZ4 A;  1T6J A;  1Y2M A;  1AUW A;  3KDZ A;  2PTS A;  1J3U A;  3C8T A;  3BHG A;  3CZO A;  1B8F A;  1HY1 A;  1HY0 A;  5D6B A;  5F92 A;  3UNV A;  1GK3 A;  2NYN A;  3TV2 A;  1GKJ A;  2NYF A;  1I0A A;  1EB4 A;  4ADM A;  4V2Q A;  1YFM A;  1T6P A;  2QVE A;  2YII A;  3RRP A;  4BAA A;  4FFX A;  1FUO A;  1K62 A;  4C6G A;  4HGV A;  4V2R A;  4C5S A;  1TJU A;  1XWO A;  4EEI A;  4MX2 A;  5HW2 A;  4CQ5 A;  5F91 A;  1KQ7 A;  3KDY A;  1C3C A;  4C5U A;  2X75 A;  2FUS A;  2QGA B;  3NO9 A;  3R6Y A;  1FUP A;  4NLE A;  2J91 A;  2RJR A;  4APA A;  4ADL A;  3GZH A;  5EYT A;  3R6V A;  1GKM A;  1RE5 A;  1FUR A;  2O78 A;  3OCE A;  2PTQ A;  3E04 A;  1U15 A;  4BAB A;  1C3U A;  3R6Q A; 
#chains in the Genus database with same CATH topology
 5M0J A;  1YIS A;  3OCF A;  2D28 C;  1Z4L A;  1Z4I A;  3BWV A;  1TJV A;  2O7F A;  2O7D A;  3QBP A;  4NSL A;  5EYV A;  4L57 A;  2O7E A;  2HVG A;  2VD6 A;  4C5R A;  2E9F A;  1K7W A;  2RJS A;  1W27 A;  1XMD A;  4EFC A;  1XMC A;  3RD8 A;  1GK2 A;  4FLC A;  2PFM A;  2PTR A;  1U16 A;  1Z4Q A;  3CI0 K;  1DCN A;  2OHY A;  4NFL A;  1JSW A;  1MH9 A;  1TJ7 A;  2JAR A;  1TJW A;  4APB A;  1VDK A;  1FUQ A;  1DOF A;  4L6A A;  1T9H A;  2O6Y A;  1Z4J A;  1Q5N A;  1XLY A;  1Z4K A;  4YIK A;  1YFE A;  3GTD A;  2O7B A;  3NZ4 A;  1T6J A;  1Y2M A;  1AUW A;  3KDZ A;  2PTS A;  4MWO A;  1J3U A;  2RCN A;  2FEL A;  2VL7 A;  3C8T A;  4L6C A;  4E88 A;  3BHG A;  1XL7 A;  3F4R A;  2VSF A;  3CZO A;  1B8F A;  1HY1 A;  2JAU A;  1HY0 A;  1Q92 A;  3U13 A;  5D6B A;  5F92 A;  3UNV A;  4YIH A;  1GK3 A;  2NYN A;  3TV2 A;  1GKJ A;  2NYF A;  1Z4P X;  1I0A A;  2D27 A;  1EB4 A;  4ADM A;  4V2Q A;  1YFM A;  1T6P A;  2QVE A;  2JAW A;  2YII A;  3RRP A;  4BAA A;  1Q91 A;  1FUO A;  4IQJ M;  4FFX A;  1K62 A;  4C6G A;  3U19 A;  4HGV A;  1Z4M A;  4V2R A;  4C5S A;  1TJU A;  1XWO A;  4EEI A;  2JAO A;  4MX2 A;  5HW2 A;  3CRW 1;  4CQ5 A;  5F91 A;  5M0I A;  1KQ7 A;  3KDY A;  5H8W A;  1C3C A;  4C5U A;  2I7D A;  2X75 A;  4WNL A;  2FUS A;  2QGA B;  3NO9 A;  3R6Y A;  1FUP A;  4NLE A;  3F4T A;  2J91 A;  2RJR A;  4APA A;  4ADL A;  3GZH A;  5EYT A;  3R6V A;  1GKM A;  2FEN A;  1RE5 A;  4MUM A;  3F4S A;  1XL8 A;  1FUR A;  1U0L A;  2O78 A;  3CRV A;  3OCE A;  1IW7 D;  2PTQ A;  3E04 A;  1U15 A;  4BAB A;  1C3U A;  3R6Q A;  4A15 A;  2YV5 A; 
#chains in the Genus database with same CATH homology
 1YIS A;  3OCF A;  1TJV A;  2O7F A;  2O7D A;  3QBP A;  4NSL A;  5EYV A;  2O7E A;  2HVG A;  2VD6 A;  4C5R A;  2E9F A;  1K7W A;  2RJS A;  1W27 A;  4EFC A;  3RD8 A;  1GK2 A;  4FLC A;  2PFM A;  2PTR A;  1U16 A;  1DCN A;  2OHY A;  1JSW A;  1TJ7 A;  1TJW A;  4APB A;  1VDK A;  1FUQ A;  1DOF A;  2O6Y A;  1Q5N A;  1YFE A;  3GTD A;  2O7B A;  3NZ4 A;  1T6J A;  1Y2M A;  1AUW A;  3KDZ A;  2PTS A;  1J3U A;  3C8T A;  3BHG A;  3CZO A;  1B8F A;  1HY1 A;  1HY0 A;  5D6B A;  5F92 A;  3UNV A;  1GK3 A;  2NYN A;  3TV2 A;  1GKJ A;  2NYF A;  1I0A A;  1EB4 A;  4ADM A;  4V2Q A;  1YFM A;  1T6P A;  2QVE A;  2YII A;  3RRP A;  4BAA A;  4FFX A;  1FUO A;  1K62 A;  4C6G A;  4HGV A;  4V2R A;  4C5S A;  1TJU A;  1XWO A;  4EEI A;  4MX2 A;  5HW2 A;  4CQ5 A;  5F91 A;  1KQ7 A;  3KDY A;  1C3C A;  4C5U A;  2X75 A;  2FUS A;  2QGA B;  3NO9 A;  3R6Y A;  1FUP A;  4NLE A;  2J91 A;  2RJR A;  4APA A;  4ADL A;  3GZH A;  5EYT A;  3R6V A;  1GKM A;  1RE5 A;  1FUR A;  2O78 A;  3OCE A;  2PTQ A;  3E04 A;  1U15 A;  4BAB A;  1C3U A;  3R6Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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